+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sinorhizobium meliloti 2011

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SM2011_b20708 Putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SM2011_c03195 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SM2011_b20709 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SM2011_c00452 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SM2011_c02843 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SM2011_c02448 mutT; Putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SM2011_c00461 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SM2011_b20708 Putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SM2011_c01728 ada; Methylated-DNA--protein-cysteine methyltransferase (regulatory protein of adaptative response) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SM2011_c02841 Putative methylated-DNA--protein-cysteine methyltransferase transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SM2011_c02566 alkB; putative DNA repair system specific for alkylated DNA protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E SM2011_c03195 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SM2011_c02375 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SM2011_b21448 Putative DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SM2011_c00736 Putative DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SM2011_b20709 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SM2011_c00452 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SM2011_c00923 tag; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SM2011_c01154 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SM2011_c02843 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SM2011_c00956 xthA1; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SM2011_b20689 xthA4; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SM2011_c03818 xthA3; Putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SM2011_c02077 xthA2; Putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SM2011_c00292 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SM2011_c02850 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SM2011_c01235 uvrA; putative excinuclease ABC subunit A (DNA repair ATP-binding) protein K03701 uvrA; excinuclease ABC subunit A E SM2011_c04231 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SM2011_c00602 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SM2011_c01461 uvrD1; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM2011_a2321 uvrD2; UvrD2 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM2011_c02850 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SM2011_c01317 rpoB; putative DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SM2011_c01316 rpoC; putative DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SM2011_c01285 rpoA; DNA-directed RNA polymerase,alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SM2011_c02408 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SM2011_c04450 mfd; putative transcription-repair coupling factor (TRCF) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SM2011_c01125 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SM2011_c00932 mutL; putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SM2011_c00378 xseA; Putative exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SM2011_c00970 xseB; Putative exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SM2011_c01375 dnaE1; putative DNA polymerase III,alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SM2011_c00415 dnaN; putative DNA polymerase III,beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SM2011_c00586 Putative DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SM2011_c02802 Putative DNA polymerase III,delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SM2011_c01190 Putative DNA polymerase III,delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SM2011_c02789 dnaQ; putative DNA polymerase III,epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SM2011_a0255 Putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SM2011_c02905 dnaX; Putative DNA polymerase III subunit TAU protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SM2011_c01461 uvrD1; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM2011_a2321 uvrD2; UvrD2 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM2011_c01233 ssb; putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein E SM2011_c03764 vsr; putative DNA mismatch endonuclease,patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SM2011_c00760 recA; DNA strand exchange and recombination protein K03553 recA; recombination protein RecA E SM2011_c03966 ruvA; putative holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SM2011_c03965 ruvB; putative holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SM2011_c03967 ruvC; putative holliday junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SM2011_c02496 priA; putative primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SM2011_c00760 recA; DNA strand exchange and recombination protein K03553 recA; recombination protein RecA E SM2011_c00556 radA; Putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms E SM2011_c02863 recF; DNA repair protein K03629 recF; DNA replication and repair protein RecF E SM2011_c00228 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SM2011_c00292 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SM2011_c02635 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E SM2011_c02908 recR; putative recombination protein K06187 recR; recombination protein RecR E SM2011_c01877 recN; putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SM2011_c03966 ruvA; putative holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SM2011_c03965 ruvB; putative holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SM2011_c03967 ruvC; putative holliday junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E SM2011_c02760 ATP-dependent nuclease / helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SM2011_c02759 Hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SM2011_c00100 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SM2011_b21406 hypothetical protein K10979 ku; DNA end-binding protein Ku E SM2011_b21407 hypothetical protein K10979 ku; DNA end-binding protein Ku E SM2011_b20686 Putative DNA ligase K10979 ku; DNA end-binding protein Ku E SM2011_a0426 hypothetical protein K10979 ku; DNA end-binding protein Ku E SM2011_a0424 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM2011_b20912 Putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM2011_c03959 putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM2011_b21044 Putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM2011_a0414 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SM2011_c01231 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SM2011_c02782 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SM2011_b21445 Putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SM2011_c01364 topA; Putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SM2011_c01906 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SM2011_c00292 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SM2011_c02635 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F SM2011_c02908 recR; putative recombination protein K06187 recR; recombination protein RecR F SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SM2011_c01786 ihfA; putative integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SM2011_c01134 ihfB; putative integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F SM2011_c01566 recQ; putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SM2011_c01235 uvrA; putative excinuclease ABC subunit A (DNA repair ATP-binding) protein K03701 uvrA; excinuclease ABC subunit A F SM2011_c04231 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SM2011_c01373 dinB1; Putative DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SM2011_a2355 dinB2; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SM2011_c00760 recA; DNA strand exchange and recombination protein K03553 recA; recombination protein RecA D SM2011_c01183 lexA; Putative LexA repressor transcription regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D SM2011_c01877 recN; putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SM2011_a0888 hypothetical protein K14160 imuA; protein ImuA D SM2011_c03790 hypothetical protein K14160 imuA; protein ImuA D SM2011_a0890 hypothetical protein K14161 imuB; protein ImuB D SM2011_c03789 imuB; Putative DNA polymerase K14161 imuB; protein ImuB D SM2011_a0892 dnaE3; Error-prone DNA polymerase 3 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SM2011_c03788 dnaE2; Putative error-prone DNA polymerase 3 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SM2011_c01233 ssb; putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SM2011_c02237 Putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SM2011_c02448 mutT; Putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SM2011_c00461 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SM2011_c01237 nrdJ; Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024