+F Repair protein KO
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DNA Repair and Recombination Proteins - Sinorhizobium meliloti 2011
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SM2011_b20708 Putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E SM2011_c03195 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SM2011_b20709 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SM2011_c00452 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SM2011_c02843 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SM2011_c02448 mutT; Putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SM2011_c00461 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SM2011_b20708 Putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SM2011_c01728 ada; Methylated-DNA--protein-cysteine methyltransferase (regulatory protein of adaptative response) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D SM2011_c02841 Putative methylated-DNA--protein-cysteine methyltransferase transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D SM2011_c02566 alkB; putative DNA repair system specific for alkylated DNA protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E SM2011_c03195 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SM2011_c02375 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E SM2011_b21448 Putative DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E SM2011_c00736 Putative DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E SM2011_b20709 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SM2011_c00452 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SM2011_c00923 tag; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SM2011_c01154 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SM2011_c02843 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SM2011_c00956 xthA1; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SM2011_b20689 xthA4; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SM2011_c03818 xthA3; Putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SM2011_c02077 xthA2; Putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E SM2011_c00292 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E SM2011_c02850 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SM2011_c01235 uvrA; putative excinuclease ABC subunit A (DNA repair ATP-binding) protein K03701 uvrA; excinuclease ABC subunit A
E SM2011_c04231 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E SM2011_c00602 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E SM2011_c01461 uvrD1; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SM2011_a2321 uvrD2; UvrD2 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SM2011_c02850 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SM2011_c01317 rpoB; putative DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SM2011_c01316 rpoC; putative DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SM2011_c01285 rpoA; DNA-directed RNA polymerase,alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SM2011_c02408 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F SM2011_c04450 mfd; putative transcription-repair coupling factor (TRCF) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SM2011_c01125 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E SM2011_c00932 mutL; putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E SM2011_c00378 xseA; Putative exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E SM2011_c00970 xseB; Putative exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E SM2011_c01375 dnaE1; putative DNA polymerase III,alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SM2011_c00415 dnaN; putative DNA polymerase III,beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SM2011_c00586 Putative DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E SM2011_c02802 Putative DNA polymerase III,delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E SM2011_c01190 Putative DNA polymerase III,delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SM2011_c02789 dnaQ; putative DNA polymerase III,epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SM2011_a0255 Putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SM2011_c02905 dnaX; Putative DNA polymerase III subunit TAU protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SM2011_c01461 uvrD1; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SM2011_a2321 uvrD2; UvrD2 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SM2011_c01233 ssb; putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E SM2011_c03764 vsr; putative DNA mismatch endonuclease,patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SM2011_c00760 recA; DNA strand exchange and recombination protein K03553 recA; recombination protein RecA
E SM2011_c03966 ruvA; putative holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E SM2011_c03965 ruvB; putative holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SM2011_c03967 ruvC; putative holliday junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SM2011_c02496 priA; putative primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E SM2011_c00760 recA; DNA strand exchange and recombination protein K03553 recA; recombination protein RecA
E SM2011_c00556 radA; Putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E SM2011_c02863 recF; DNA repair protein K03629 recF; DNA replication and repair protein RecF
E SM2011_c00228 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SM2011_c00292 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E SM2011_c02635 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E SM2011_c02908 recR; putative recombination protein K06187 recR; recombination protein RecR
E SM2011_c01877 recN; putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E SM2011_c03966 ruvA; putative holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E SM2011_c03965 ruvB; putative holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SM2011_c03967 ruvC; putative holliday junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E SM2011_c02760 ATP-dependent nuclease / helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E SM2011_c02759 Hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E SM2011_c00100 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E SM2011_b21406 hypothetical protein K10979 ku; DNA end-binding protein Ku
E SM2011_b21407 hypothetical protein K10979 ku; DNA end-binding protein Ku
E SM2011_b20686 Putative DNA ligase K10979 ku; DNA end-binding protein Ku
E SM2011_a0426 hypothetical protein K10979 ku; DNA end-binding protein Ku
E SM2011_a0424 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E SM2011_b20912 Putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E SM2011_c03959 putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E SM2011_b21044 Putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E SM2011_a0414 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SM2011_c01231 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SM2011_c02782 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SM2011_b21445 Putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F SM2011_c01364 topA; Putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F SM2011_c01906 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SM2011_c00292 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F SM2011_c02635 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F SM2011_c02908 recR; putative recombination protein K06187 recR; recombination protein RecR
F SM2011_c01878 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F SM2011_c01786 ihfA; putative integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F SM2011_c01134 ihfB; putative integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F SM2011_c01566 recQ; putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SM2011_c01235 uvrA; putative excinuclease ABC subunit A (DNA repair ATP-binding) protein K03701 uvrA; excinuclease ABC subunit A
F SM2011_c04231 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SM2011_c01373 dinB1; Putative DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SM2011_a2355 dinB2; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D SM2011_c00760 recA; DNA strand exchange and recombination protein K03553 recA; recombination protein RecA
D SM2011_c01183 lexA; Putative LexA repressor transcription regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D SM2011_c01877 recN; putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D SM2011_a0888 hypothetical protein K14160 imuA; protein ImuA
D SM2011_c03790 hypothetical protein K14160 imuA; protein ImuA
D SM2011_a0890 hypothetical protein K14161 imuB; protein ImuB
D SM2011_c03789 imuB; Putative DNA polymerase K14161 imuB; protein ImuB
D SM2011_a0892 dnaE3; Error-prone DNA polymerase 3 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D SM2011_c03788 dnaE2; Putative error-prone DNA polymerase 3 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D SM2011_c01233 ssb; putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D SM2011_c02237 Putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D SM2011_c02448 mutT; Putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SM2011_c00461 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SM2011_c01237 nrdJ; Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024