+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Selaginella moellendorffii
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E SELMODRAFT_424575 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E SELMODRAFT_84950 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E SELMODRAFT_96176 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E SELMODRAFT_158424 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E SELMODRAFT_100916 hypothetical protein K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E SELMODRAFT_122588 CDKD-2; hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E SELMODRAFT_100958 CDKD-1; hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E SELMODRAFT_115849 ABH1-1; hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E SELMODRAFT_187457 ABH1-2; hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E SELMODRAFT_125790 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
E SELMODRAFT_129288 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
E SELMODRAFT_120828 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E SELMODRAFT_177107 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
D Cleavage and polyadenylation specificity factor (CPSF) complex
E SELMODRAFT_82277 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E SELMODRAFT_184138 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E SELMODRAFT_441578 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SELMODRAFT_429848 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SELMODRAFT_234972 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SELMODRAFT_234671 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SELMODRAFT_236963 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SELMODRAFT_51909 FY-2; hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E SELMODRAFT_61964 FY-1; hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E SELMODRAFT_106429 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SELMODRAFT_186562 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SELMODRAFT_106210 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SELMODRAFT_83551 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SELMODRAFT_106264 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SELMODRAFT_184770 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_230666 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_228509 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_144185 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_186330 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_235294 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_117581 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_185661 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E SELMODRAFT_179725 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E SELMODRAFT_141637 hypothetical protein K14406 CSTF1; cleavage stimulation factor subunit 1
E SELMODRAFT_270418 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E SELMODRAFT_270661 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E SELMODRAFT_442688 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E SELMODRAFT_8958 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E SELMODRAFT_8957 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E SELMODRAFT_183167 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E SELMODRAFT_112116 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E SELMODRAFT_176675 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E SELMODRAFT_230895 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E SELMODRAFT_228413 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E SELMODRAFT_228181 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E SELMODRAFT_227744 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E SELMODRAFT_441578 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SELMODRAFT_429848 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SELMODRAFT_234972 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SELMODRAFT_234671 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SELMODRAFT_236963 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SELMODRAFT_442688 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E SELMODRAFT_80011 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E SELMODRAFT_235476 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E SELMODRAFT_96727 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
E SELMODRAFT_449156 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E SELMODRAFT_130187 hypothetical protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E SELMODRAFT_123364 hypothetical protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E SELMODRAFT_110877 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E SELMODRAFT_443646 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E SELMODRAFT_425209 hypothetical protein K22824 WTAP; pre-mRNA-splicing regulator WTAP
E SELMODRAFT_424143 hypothetical protein K22824 WTAP; pre-mRNA-splicing regulator WTAP
E SELMODRAFT_446134 hypothetical protein K22824 WTAP; pre-mRNA-splicing regulator WTAP
D Poly(A) addition factors
E SELMODRAFT_169728 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E SELMODRAFT_180849 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E SELMODRAFT_171521 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E SELMODRAFT_231918 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E SELMODRAFT_414577 hypothetical protein K10683 BARD1; BRCA1-associated RING domain protein 1
E SELMODRAFT_437689 hypothetical protein K13192 RBM26; RNA-binding protein 26
E SELMODRAFT_445508 hypothetical protein K13192 RBM26; RNA-binding protein 26
E SELMODRAFT_94921 hypothetical protein K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E SELMODRAFT_64626 hypothetical protein K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D SELMODRAFT_79872 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D SELMODRAFT_439492 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D SELMODRAFT_232413 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D SELMODRAFT_271534 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D SELMODRAFT_407627 hypothetical protein K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D SELMODRAFT_130620 hypothetical protein K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E SELMODRAFT_118264 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E SELMODRAFT_100512 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E SELMODRAFT_74080 hypothetical protein K12881 THOC4; THO complex subunit 4
E SELMODRAFT_87004 hypothetical protein K12881 THOC4; THO complex subunit 4
E SELMODRAFT_146823 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E SELMODRAFT_446187 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E SELMODRAFT_164382 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SELMODRAFT_91413 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SELMODRAFT_442170 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SELMODRAFT_158899 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E SELMODRAFT_180027 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E SELMODRAFT_420821 hypothetical protein K13114 PNN; pinin
E SELMODRAFT_410528 hypothetical protein K13114 PNN; pinin
E SELMODRAFT_444007 hypothetical protein K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E SELMODRAFT_442865 hypothetical protein K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E SELMODRAFT_403662 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E SELMODRAFT_446044 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E SELMODRAFT_424875 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E SELMODRAFT_118260 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
E SELMODRAFT_100233 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E SELMODRAFT_135550 hypothetical protein K12878 THOC1; THO complex subunit 1
E SELMODRAFT_96989 hypothetical protein K12878 THOC1; THO complex subunit 1
E SELMODRAFT_173562 hypothetical protein K12879 THOC2; THO complex subunit 2
E SELMODRAFT_175123 hypothetical protein K12879 THOC2; THO complex subunit 2
E SELMODRAFT_185709 hypothetical protein K12880 THOC3; THO complex subunit 3
E SELMODRAFT_179772 hypothetical protein K12880 THOC3; THO complex subunit 3
E SELMODRAFT_74080 hypothetical protein K12881 THOC4; THO complex subunit 4
E SELMODRAFT_87004 hypothetical protein K12881 THOC4; THO complex subunit 4
E SELMODRAFT_82087 hypothetical protein K13174 THOC5; THO complex subunit 5
E SELMODRAFT_169328 hypothetical protein K13174 THOC5; THO complex subunit 5
E SELMODRAFT_438744 hypothetical protein K13176 THOC7; THO complex subunit 7
E SELMODRAFT_88896 hypothetical protein K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E SELMODRAFT_91805 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E SELMODRAFT_442197 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SELMODRAFT_415832 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SELMODRAFT_164290 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E SELMODRAFT_408005 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E SELMODRAFT_439060 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
E SELMODRAFT_438035 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
E SELMODRAFT_405782 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E SELMODRAFT_444132 hypothetical protein K09291 TPR; nucleoprotein TPR
E SELMODRAFT_427239 hypothetical protein K09291 TPR; nucleoprotein TPR
E SELMODRAFT_235429 hypothetical protein K14298 RAE1; mRNA export factor
E SELMODRAFT_173029 hypothetical protein K14298 RAE1; mRNA export factor
E SELMODRAFT_128111 hypothetical protein K14004 SEC13; protein transport protein SEC13
E SELMODRAFT_76631 hypothetical protein K14004 SEC13; protein transport protein SEC13
E SELMODRAFT_109958 hypothetical protein K14004 SEC13; protein transport protein SEC13
E SELMODRAFT_94917 hypothetical protein K14004 SEC13; protein transport protein SEC13
E SELMODRAFT_74209 hypothetical protein K14305 NUP43; nuclear pore complex protein Nup43
E SELMODRAFT_119189 hypothetical protein K14305 NUP43; nuclear pore complex protein Nup43
E SELMODRAFT_177656 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E SELMODRAFT_185249 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E SELMODRAFT_139717 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E SELMODRAFT_144528 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E SELMODRAFT_447413 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E SELMODRAFT_182361 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E SELMODRAFT_439467 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E SELMODRAFT_96126 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E SELMODRAFT_407341 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E SELMODRAFT_414465 hypothetical protein K14313 NUP35; nuclear pore complex protein Nup53
E SELMODRAFT_443756 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E SELMODRAFT_439663 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E SELMODRAFT_99561 hypothetical protein K14314 NUP210; nuclear pore complex protein Nup210
E SELMODRAFT_103787 hypothetical protein K14314 NUP210; nuclear pore complex protein Nup210
E SELMODRAFT_443776 hypothetical protein K14317 NUP214; nuclear pore complex protein Nup214
E SELMODRAFT_442497 hypothetical protein K14315 NDC1; nucleoporin NDC1
E SELMODRAFT_438409 hypothetical protein K14315 NDC1; nucleoporin NDC1
E SELMODRAFT_234532 hypothetical protein K14299 SEH1; nucleoporin SEH1
E SELMODRAFT_98475 hypothetical protein K14299 SEH1; nucleoporin SEH1
E SELMODRAFT_146571 hypothetical protein K14320 AAAS; aladin
E SELMODRAFT_136731 hypothetical protein K14320 AAAS; aladin
E SELMODRAFT_136772 hypothetical protein K14320 AAAS; aladin
E SELMODRAFT_138356 hypothetical protein K14320 AAAS; aladin
E SELMODRAFT_402470 hypothetical protein K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E SELMODRAFT_271700 RAN-2; RAN, ras family GTPase K07936 RAN; GTP-binding nuclear protein Ran
E SELMODRAFT_270966 RAN-1; RAN, ras family GTPase K07936 RAN; GTP-binding nuclear protein Ran
E SELMODRAFT_63727 hypothetical protein K18726 FAF2; FAS-associated factor 2
E SELMODRAFT_164130 hypothetical protein K18726 FAF2; FAS-associated factor 2
E SELMODRAFT_145748 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E SELMODRAFT_269585 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E SELMODRAFT_131998 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SELMODRAFT_114010 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SELMODRAFT_114854 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SELMODRAFT_116775 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SELMODRAFT_79829 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SELMODRAFT_233936 hypothetical protein K14290 XPO1; exportin-1
E SELMODRAFT_163064 hypothetical protein K14290 XPO1; exportin-1
E SELMODRAFT_87550 hypothetical protein K18460 XPO7; exportin-7
E SELMODRAFT_75763 hypothetical protein K18460 XPO7; exportin-7
E SELMODRAFT_31007 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
E SELMODRAFT_114118 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
E SELMODRAFT_116808 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
E SELMODRAFT_31008 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E SELMODRAFT_119068 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_419389 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_446282 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_125743 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_236066 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_129372 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_428347 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_403534 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_403535 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_116103 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_143895 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_85554 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_228839 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_441388 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_411827 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_411829 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_428596 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_424620 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_437322 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SELMODRAFT_30927 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SELMODRAFT_160351 hypothetical protein K05749 CYFIP; cytoplasmic FMR1 interacting protein
E SELMODRAFT_161939 hypothetical protein K05749 CYFIP; cytoplasmic FMR1 interacting protein
E SELMODRAFT_151274 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_52088 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_267628 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_42150 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_52119 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_105510 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_101161 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_122762 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_269256 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_269487 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_21095 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_74731 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_168822 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_10868 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_403447 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SELMODRAFT_441420 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SELMODRAFT_417664 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E SELMODRAFT_175548 hypothetical protein K24272 DENR; density-regulated protein
E SELMODRAFT_141796 hypothetical protein K24272 DENR; density-regulated protein
E SELMODRAFT_271103 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E SELMODRAFT_151090 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_169811 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_163608 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_45421 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_70937 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_164019 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_4662 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_4658 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_144531 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_122630 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_68338 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_172861 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_172407 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_101375 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_48637 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_27842 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SELMODRAFT_230720 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E SELMODRAFT_95620 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E SELMODRAFT_81932 hypothetical protein K06965 PELO; protein pelota
E SELMODRAFT_103116 hypothetical protein K06965 PELO; protein pelota
E SELMODRAFT_74095 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E SELMODRAFT_117870 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E SELMODRAFT_159820 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E SELMODRAFT_102545 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E SELMODRAFT_160867 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E SELMODRAFT_43856 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E SELMODRAFT_43861 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E SELMODRAFT_447130 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E SELMODRAFT_79566 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E SELMODRAFT_232369 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E SELMODRAFT_447133 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E SELMODRAFT_448028 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E SELMODRAFT_110005 hypothetical protein K21772 PURA; transcriptional activator protein Pur-alpha
E SELMODRAFT_138032 hypothetical protein K21772 PURA; transcriptional activator protein Pur-alpha
E SELMODRAFT_53650 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
E SELMODRAFT_415346 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
E SELMODRAFT_53649 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E SELMODRAFT_440399 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E SELMODRAFT_442186 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E SELMODRAFT_442941 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E SELMODRAFT_416122 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E SELMODRAFT_123370 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E SELMODRAFT_115313 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E SELMODRAFT_440923 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SELMODRAFT_154507 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
D Protein phosphatase 2A
E SELMODRAFT_270568 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_178363 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_228841 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_175936 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_166330 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E SELMODRAFT_268734 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E SELMODRAFT_232183 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E SELMODRAFT_447252 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E SELMODRAFT_130483 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E SELMODRAFT_131026 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E SELMODRAFT_152267 hypothetical protein K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E SELMODRAFT_90971 hypothetical protein K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E SELMODRAFT_85336 hypothetical protein K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E SELMODRAFT_184916 hypothetical protein K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E SELMODRAFT_63731 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E SELMODRAFT_167051 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E SELMODRAFT_267276 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E SELMODRAFT_171686 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E SELMODRAFT_232803 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E SELMODRAFT_149261 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E SELMODRAFT_99313 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E SELMODRAFT_88215 hypothetical protein K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E SELMODRAFT_114908 hypothetical protein K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E SELMODRAFT_417225 hypothetical protein K14409 SMG7; protein SMG7
E SELMODRAFT_410159 hypothetical protein K14409 SMG7; protein SMG7
E SELMODRAFT_88024 hypothetical protein K18735 SMG9; protein SMG9
E SELMODRAFT_114916 hypothetical protein K18735 SMG9; protein SMG9
C Factors involved in mRNA localization
D Cargo complex
E SELMODRAFT_74812 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E SELMODRAFT_86524 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E SELMODRAFT_230820 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_98074 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_174533 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_233981 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_109322 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_184226 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_137032 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_103418 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_138110 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
E SELMODRAFT_104837 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E SELMODRAFT_437890 hypothetical protein K13210 FUBP; far upstream element-binding protein
E SELMODRAFT_171892 hypothetical protein K13210 FUBP; far upstream element-binding protein
E SELMODRAFT_270693 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E SELMODRAFT_169717 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E SELMODRAFT_171512 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E SELMODRAFT_270852 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E SELMODRAFT_156635 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E SELMODRAFT_98733 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E SELMODRAFT_160351 hypothetical protein K05749 CYFIP; cytoplasmic FMR1 interacting protein
E SELMODRAFT_161939 hypothetical protein K05749 CYFIP; cytoplasmic FMR1 interacting protein
E SELMODRAFT_445677 hypothetical protein K21444 PCBP3_4; poly(rC)-binding protein 3/4
E SELMODRAFT_10869 hypothetical protein K21444 PCBP3_4; poly(rC)-binding protein 3/4
E SELMODRAFT_87147 hypothetical protein K21444 PCBP3_4; poly(rC)-binding protein 3/4
E SELMODRAFT_73985 hypothetical protein K21444 PCBP3_4; poly(rC)-binding protein 3/4
E SELMODRAFT_409630 FLK1-2; hypothetical protein K21444 PCBP3_4; poly(rC)-binding protein 3/4
E SELMODRAFT_428421 FLK1-1; hypothetical protein K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E SELMODRAFT_109987 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_110151 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_181346 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_232189 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_234268 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_235430 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_446086 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_98227 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_99227 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_105721 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_230312 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_50586 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SELMODRAFT_119068 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_419389 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_446282 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_125743 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_236066 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_129372 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SELMODRAFT_151274 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_52088 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_267628 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_42150 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_52119 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_105510 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SELMODRAFT_158648 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SELMODRAFT_235717 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SELMODRAFT_443169 hypothetical protein K18749 LSM14; protein LSM14
E SELMODRAFT_446398 hypothetical protein K18749 LSM14; protein LSM14
E SELMODRAFT_431760 hypothetical protein K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E SELMODRAFT_430895 hypothetical protein K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E SELMODRAFT_236589 hypothetical protein K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E SELMODRAFT_137449 hypothetical protein K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E SELMODRAFT_175519 hypothetical protein K18752 TNPO1; transportin-1
E SELMODRAFT_182961 hypothetical protein K18752 TNPO1; transportin-1
E SELMODRAFT_88215 hypothetical protein K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E SELMODRAFT_114908 hypothetical protein K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E SELMODRAFT_417225 hypothetical protein K14409 SMG7; protein SMG7
E SELMODRAFT_410159 hypothetical protein K14409 SMG7; protein SMG7
E SELMODRAFT_187582 hypothetical protein K18754 LIN28; protein lin-28
E SELMODRAFT_151090 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_169811 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_163608 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_45421 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_70937 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E SELMODRAFT_137987 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E SELMODRAFT_110120 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E SELMODRAFT_66152 hypothetical protein K18757 LARP1; la-related protein 1
E SELMODRAFT_104328 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E SELMODRAFT_438877 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SELMODRAFT_427515 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SELMODRAFT_28398 hypothetical protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E SELMODRAFT_146440 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SELMODRAFT_94071 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SELMODRAFT_175720 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SELMODRAFT_232056 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SELMODRAFT_107803 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SELMODRAFT_125039 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SELMODRAFT_81834 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SELMODRAFT_128761 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SELMODRAFT_90525 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SELMODRAFT_130618 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SELMODRAFT_235757 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SELMODRAFT_268399 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SELMODRAFT_417493 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SELMODRAFT_415303 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SELMODRAFT_417143 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E SELMODRAFT_83281 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E SELMODRAFT_230820 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_98074 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_174533 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_233981 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_109322 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_184226 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_137032 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_103418 hypothetical protein K10357 MYO5; myosin V
E SELMODRAFT_231415 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_230496 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_405729 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_230143 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_230058 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_78469 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_404672 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_231979 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_100162 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_150151 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_232506 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_233518 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_178975 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_233509 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_419896 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_112368 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_420969 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_105136 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_234301 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_269452 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_235703 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_235448 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_235864 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_130285 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_125554 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_236391 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_236787 hypothetical protein K07374 TUBA; tubulin alpha
E SELMODRAFT_440060 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SELMODRAFT_444949 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SELMODRAFT_10839 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SELMODRAFT_430429 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SELMODRAFT_109010 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E SELMODRAFT_93109 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E SELMODRAFT_270348 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_178984 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_418021 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_108336 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_86257 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_84624 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_117491 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_179583 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_444748 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_158922 hypothetical protein K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E SELMODRAFT_445437 hypothetical protein K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E SELMODRAFT_112306 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E SELMODRAFT_165728 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E SELMODRAFT_440923 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SELMODRAFT_154507 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SELMODRAFT_75793 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E SELMODRAFT_87027 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E SELMODRAFT_105350 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E SELMODRAFT_98932 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E SELMODRAFT_6427 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
E SELMODRAFT_6429 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E SELMODRAFT_64568 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E SELMODRAFT_44478 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E SELMODRAFT_101161 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_122762 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_269256 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_269487 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_21095 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_74731 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_168822 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_10868 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SELMODRAFT_149237 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E SELMODRAFT_104015 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E SELMODRAFT_182220 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E SELMODRAFT_446105 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E SELMODRAFT_428347 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_403534 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_403535 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_116103 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_143895 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_85554 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_228839 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_441388 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_411827 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_411829 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_428596 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_424620 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SELMODRAFT_164382 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SELMODRAFT_91413 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SELMODRAFT_442170 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SELMODRAFT_437322 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SELMODRAFT_30927 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SELMODRAFT_266532 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E SELMODRAFT_144795 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E SELMODRAFT_28398 hypothetical protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E SELMODRAFT_438877 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SELMODRAFT_427515 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SELMODRAFT_158648 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SELMODRAFT_235717 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SELMODRAFT_112306 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E SELMODRAFT_165728 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E SELMODRAFT_146440 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SELMODRAFT_94071 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SELMODRAFT_175720 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SELMODRAFT_232056 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SELMODRAFT_107803 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SELMODRAFT_125039 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SELMODRAFT_81834 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SELMODRAFT_128761 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SELMODRAFT_90525 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SELMODRAFT_130618 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SELMODRAFT_235757 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SELMODRAFT_268399 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SELMODRAFT_417493 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SELMODRAFT_415303 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SELMODRAFT_417143 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E SELMODRAFT_83281 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E SELMODRAFT_175887 hypothetical protein K07573 CSL4; exosome complex component CSL4
E SELMODRAFT_178307 hypothetical protein K07573 CSL4; exosome complex component CSL4
E SELMODRAFT_84338 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SELMODRAFT_147871 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SELMODRAFT_141745 hypothetical protein K03681 RRP40; exosome complex component RRP40
E SELMODRAFT_102189 hypothetical protein K03681 RRP40; exosome complex component RRP40
E SELMODRAFT_233636 hypothetical protein K11600 RRP41; exosome complex component RRP41
E SELMODRAFT_155148 hypothetical protein K11600 RRP41; exosome complex component RRP41
E SELMODRAFT_441621 hypothetical protein K12587 MTR3; exosome complex component MTR3
E SELMODRAFT_80529 hypothetical protein K12587 MTR3; exosome complex component MTR3
E SELMODRAFT_102800 hypothetical protein K12589 RRP42; exosome complex component RRP42
E SELMODRAFT_106958 hypothetical protein K12589 RRP42; exosome complex component RRP42
E SELMODRAFT_233365 hypothetical protein K12586 RRP43; exosome complex component RRP43
E SELMODRAFT_176463 hypothetical protein K12586 RRP43; exosome complex component RRP43
E SELMODRAFT_77552 hypothetical protein K03678 RRP45; exosome complex component RRP45
E SELMODRAFT_94605 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E SELMODRAFT_180518 hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E SELMODRAFT_129119 hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E SELMODRAFT_445658 hypothetical protein K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E SELMODRAFT_447538 hypothetical protein K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E SELMODRAFT_84661 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E SELMODRAFT_95804 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E SELMODRAFT_405733 hypothetical protein K12592 C1D; exosome complex protein LRP1
E SELMODRAFT_442808 hypothetical protein K12592 C1D; exosome complex protein LRP1
D TRAMP complex
E SELMODRAFT_11961 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E SELMODRAFT_22150 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E SELMODRAFT_268485 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E SELMODRAFT_79650 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E SELMODRAFT_174598 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E SELMODRAFT_107227 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E SELMODRAFT_403447 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SELMODRAFT_441420 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SELMODRAFT_115934 hypothetical protein K12600 SKI3; superkiller protein 3
E SELMODRAFT_229638 hypothetical protein K12602 WDR61; WD repeat-containing protein 61
E SELMODRAFT_269750 hypothetical protein K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E SELMODRAFT_270348 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_178984 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_418021 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_108336 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_86257 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SELMODRAFT_440060 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SELMODRAFT_444949 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SELMODRAFT_10839 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SELMODRAFT_430429 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SELMODRAFT_109010 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E SELMODRAFT_93109 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E SELMODRAFT_84624 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_117491 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_179583 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_444748 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SELMODRAFT_236668 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E SELMODRAFT_174818 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E SELMODRAFT_61158 hypothetical protein K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E SELMODRAFT_41131 hypothetical protein K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E SELMODRAFT_73877 SmABCI2; ATP-binding cassette transporter, subfamily I, member 2, SmABCI2 K12608 CAF16; CCR4-NOT complex subunit CAF16
E SELMODRAFT_90072 SmABCI1; ATP-binding cassette transporter, subfamily I, member 1, SmABCI1 K12608 CAF16; CCR4-NOT complex subunit CAF16
E SELMODRAFT_100336 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
E SELMODRAFT_119272 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E SELMODRAFT_446815 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E SELMODRAFT_410403 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E SELMODRAFT_424560 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E SELMODRAFT_451150 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E SELMODRAFT_446247 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_426836 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_154147 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_437743 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_419303 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_98495 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_40134 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_50132 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SELMODRAFT_87763 hypothetical protein K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E SELMODRAFT_73963 hypothetical protein K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E SELMODRAFT_179031 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E SELMODRAFT_88336 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E SELMODRAFT_444477 hypothetical protein K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E SELMODRAFT_141141 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
E SELMODRAFT_229455 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E SELMODRAFT_408296 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E SELMODRAFT_402571 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E SELMODRAFT_165356 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SELMODRAFT_167539 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SELMODRAFT_120189 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SELMODRAFT_96269 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SELMODRAFT_231966 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SELMODRAFT_78644 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SELMODRAFT_77425 hypothetical protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E SELMODRAFT_84724 hypothetical protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E SELMODRAFT_113341 hypothetical protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E SELMODRAFT_104548 hypothetical protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E SELMODRAFT_146031 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_178124 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_100675 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_187341 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_150344 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_176350 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_438337 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E SELMODRAFT_138352 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E SELMODRAFT_168287 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E SELMODRAFT_176842 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E SELMODRAFT_165043 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_405358 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_85251 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_108429 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_271545 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_74977 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_87823 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_142800 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_168153 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E SELMODRAFT_159265 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E SELMODRAFT_84338 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SELMODRAFT_147871 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SELMODRAFT_175887 hypothetical protein K07573 CSL4; exosome complex component CSL4
E SELMODRAFT_178307 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E SELMODRAFT_233636 hypothetical protein K11600 RRP41; exosome complex component RRP41
E SELMODRAFT_155148 hypothetical protein K11600 RRP41; exosome complex component RRP41
E SELMODRAFT_102800 hypothetical protein K12589 RRP42; exosome complex component RRP42
E SELMODRAFT_106958 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024