+F Repair protein KO
#
DNA Repair and Recombination Proteins - Selaginella moellendorffii
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SELMODRAFT_178863 hypothetical protein K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D SELMODRAFT_410613 hypothetical protein K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D SELMODRAFT_138825 hypothetical protein K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D SELMODRAFT_96351 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SELMODRAFT_97206 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SELMODRAFT_78447 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_66695 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_46637 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_46714 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_137389 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SELMODRAFT_232080 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SELMODRAFT_1746 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SELMODRAFT_6975 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E SELMODRAFT_4607 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E SELMODRAFT_75917 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E SELMODRAFT_119537 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E SELMODRAFT_85281 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E SELMODRAFT_116252 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SELMODRAFT_134604 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
E SELMODRAFT_81439 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
E SELMODRAFT_405855 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
E SELMODRAFT_430260 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
E SELMODRAFT_405812 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F SELMODRAFT_180322 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F SELMODRAFT_155333 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F SELMODRAFT_429905 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F SELMODRAFT_441552 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F SELMODRAFT_129338 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F SELMODRAFT_125908 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F SELMODRAFT_420136 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E DNA polymerase epsilon complex
F SELMODRAFT_442263 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F SELMODRAFT_445541 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F SELMODRAFT_236823 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F SELMODRAFT_236997 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F SELMODRAFT_111965 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F SELMODRAFT_115079 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F SELMODRAFT_88436 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E SELMODRAFT_105735 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E SELMODRAFT_233576 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E SELMODRAFT_111465 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E SELMODRAFT_128023 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E SELMODRAFT_97073 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E SELMODRAFT_170833 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E SELMODRAFT_11047 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E SELMODRAFT_416931 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E SELMODRAFT_89021 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E SELMODRAFT_104482 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E SELMODRAFT_97307 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E SELMODRAFT_96946 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E SELMODRAFT_83116 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_106459 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_155063 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_86291 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_100128 hypothetical protein K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E SELMODRAFT_422701 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E SELMODRAFT_73333 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E SELMODRAFT_131309 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E SELMODRAFT_403303 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E SELMODRAFT_90144 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E SELMODRAFT_83360 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E SELMODRAFT_124300 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F SELMODRAFT_449148 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F SELMODRAFT_442877 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F SELMODRAFT_77427 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
F SELMODRAFT_82644 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F SELMODRAFT_269937 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F SELMODRAFT_269625 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F SELMODRAFT_180735 CUL4-2; ubiquitin-protein ligase, cullin 4 K10609 CUL4; cullin 4
F SELMODRAFT_172620 CUL4-1; ubiquitin-protein ligase, Cullin 4 K10609 CUL4; cullin 4
F SELMODRAFT_145521 DDB1-1; hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F SELMODRAFT_151061 DDB1-2; hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F SELMODRAFT_21554 hypothetical protein K10140 DDB2; DNA damage-binding protein 2
F SELMODRAFT_31884 hypothetical protein K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F SELMODRAFT_128555 CHR37-2; hypothetical protein K15083 RAD16; DNA repair protein RAD16
F SELMODRAFT_123971 CHR37-1; hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F SELMODRAFT_110201 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F SELMODRAFT_128226 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F SELMODRAFT_148107 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F SELMODRAFT_172903 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F SELMODRAFT_180179 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F SELMODRAFT_75337 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F SELMODRAFT_115080 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F SELMODRAFT_144908 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F SELMODRAFT_181697 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F SELMODRAFT_228648 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F SELMODRAFT_236641 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F SELMODRAFT_111873 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F SELMODRAFT_75793 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F SELMODRAFT_87027 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F SELMODRAFT_105350 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F SELMODRAFT_98932 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F SELMODRAFT_125701 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F SELMODRAFT_104121 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F SELMODRAFT_105067 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F SELMODRAFT_125489 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SELMODRAFT_77443 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SELMODRAFT_95006 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SELMODRAFT_19054 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SELMODRAFT_128647 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SELMODRAFT_232741 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SELMODRAFT_79899 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F SELMODRAFT_127452 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F SELMODRAFT_173532 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F SELMODRAFT_150734 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F SELMODRAFT_173570 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F SELMODRAFT_103560 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F SELMODRAFT_269937 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F SELMODRAFT_269625 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F SELMODRAFT_180735 CUL4-2; ubiquitin-protein ligase, cullin 4 K10609 CUL4; cullin 4
F SELMODRAFT_172620 CUL4-1; ubiquitin-protein ligase, Cullin 4 K10609 CUL4; cullin 4
F SELMODRAFT_145521 DDB1-1; hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F SELMODRAFT_151061 DDB1-2; hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F SELMODRAFT_159611 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
F SELMODRAFT_233294 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
F SELMODRAFT_266832 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F SELMODRAFT_236903 CHR8-2; hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
F SELMODRAFT_450679 CHR8-1; hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
F SELMODRAFT_269635 hypothetical protein K23720 UVSSA; UV-stimulated scaffold protein A
F SELMODRAFT_186743 hypothetical protein K23720 UVSSA; UV-stimulated scaffold protein A
F SELMODRAFT_84637 hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E SELMODRAFT_109026 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E SELMODRAFT_230853 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E SELMODRAFT_418040 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E SELMODRAFT_147068 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E SELMODRAFT_91042 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E SELMODRAFT_269587 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E SELMODRAFT_422967 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E SELMODRAFT_448050 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E SELMODRAFT_232956 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E SELMODRAFT_232450 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E SELMODRAFT_121159 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E SELMODRAFT_123271 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E SELMODRAFT_122588 CDKD-2; hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E SELMODRAFT_100958 CDKD-1; hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E SELMODRAFT_163567 CYCH-1; hypothetical protein K06634 CCNH; cyclin H
E SELMODRAFT_445744 CYCH-2; hypothetical protein K06634 CCNH; cyclin H
E SELMODRAFT_230282 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E SELMODRAFT_440128 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E SELMODRAFT_428018 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E SELMODRAFT_441216 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_89304 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_114787 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_421246 hypothetical protein K10739 RFA2; replication factor A2
E SELMODRAFT_440021 hypothetical protein K10739 RFA2; replication factor A2
D Other NER factors
E SELMODRAFT_98787 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E SELMODRAFT_137345 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E SELMODRAFT_90549 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E SELMODRAFT_232247 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E SELMODRAFT_73710 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E SELMODRAFT_86726 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E SELMODRAFT_97073 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E SELMODRAFT_412197 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E SELMODRAFT_136955 CUL3-2; hypothetical protein K03869 CUL3; cullin 3
E SELMODRAFT_98222 hypothetical protein K03869 CUL3; cullin 3
E SELMODRAFT_98006 CUL3-1; hypothetical protein K03869 CUL3; cullin 3
E SELMODRAFT_449109 hypothetical protein K03869 CUL3; cullin 3
E SELMODRAFT_106838 hypothetical protein K03872 ELOC; elongin-C
E SELMODRAFT_96367 hypothetical protein K03872 ELOC; elongin-C
E SELMODRAFT_448831 hypothetical protein K15077 ELA1; elongin-A
E SELMODRAFT_440234 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SELMODRAFT_85179 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E SELMODRAFT_407609 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E SELMODRAFT_268576 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E SELMODRAFT_30474 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_20623 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_420792 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_420794 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_114371 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_420798 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_136810 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SELMODRAFT_410679 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
E SELMODRAFT_114224 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
E SELMODRAFT_129323 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
E SELMODRAFT_125776 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E SELMODRAFT_421150 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E SELMODRAFT_408722 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E SELMODRAFT_171139 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E SELMODRAFT_121896 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E SELMODRAFT_180322 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E SELMODRAFT_155333 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E SELMODRAFT_429905 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E SELMODRAFT_441552 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E SELMODRAFT_129338 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E SELMODRAFT_125908 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E SELMODRAFT_420136 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
D RPA (replication factor A)
E SELMODRAFT_441216 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_89304 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_114787 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_421246 hypothetical protein K10739 RFA2; replication factor A2
E SELMODRAFT_440021 hypothetical protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E SELMODRAFT_80248 hypothetical protein K10754 RFC1; replication factor C subunit 1
E SELMODRAFT_101808 hypothetical protein K10754 RFC1; replication factor C subunit 1
E SELMODRAFT_123078 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E SELMODRAFT_90486 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E SELMODRAFT_235493 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E SELMODRAFT_121188 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E SELMODRAFT_234901 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E SELMODRAFT_236274 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E SELMODRAFT_119010 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E SELMODRAFT_131813 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E SELMODRAFT_105735 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E SELMODRAFT_233576 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E SELMODRAFT_138122 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E SELMODRAFT_175620 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E SELMODRAFT_97073 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E SELMODRAFT_451578 MRE11-2; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SELMODRAFT_451577 MRE11-1; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SELMODRAFT_419113 hypothetical protein K10867 NBN; nibrin
E SELMODRAFT_443665 hypothetical protein K10867 NBN; nibrin
D BRCA1-core complex
E SELMODRAFT_414577 hypothetical protein K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E SELMODRAFT_71450 hypothetical protein K20776 BABAM; BRISC and BRCA1-A complex member 1
E SELMODRAFT_67761 hypothetical protein K20776 BABAM; BRISC and BRCA1-A complex member 1
E SELMODRAFT_178578 hypothetical protein K12173 BRE; BRCA1-A complex subunit BRE
E SELMODRAFT_445185 hypothetical protein K12173 BRE; BRCA1-A complex subunit BRE
E SELMODRAFT_116616 hypothetical protein K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
E SELMODRAFT_420655 hypothetical protein K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E SELMODRAFT_408754 hypothetical protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E SELMODRAFT_437359 hypothetical protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E SELMODRAFT_446235 MEI1-2; hypothetical protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E SELMODRAFT_451419 MEI1-1; hypothetical protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E SELMODRAFT_408510 hypothetical protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E SELMODRAFT_451578 MRE11-2; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SELMODRAFT_451577 MRE11-1; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SELMODRAFT_419113 hypothetical protein K10867 NBN; nibrin
E SELMODRAFT_443665 hypothetical protein K10867 NBN; nibrin
D BRCA complex
E SELMODRAFT_408953 hypothetical protein K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E SELMODRAFT_408953 hypothetical protein K04482 RAD51; DNA repair protein RAD51
E SELMODRAFT_80718 hypothetical protein K10871 RAD51L3; RAD51-like protein 3
E SELMODRAFT_101803 hypothetical protein K10871 RAD51L3; RAD51-like protein 3
E SELMODRAFT_73323 hypothetical protein K10879 XRCC2; DNA-repair protein XRCC2
E SELMODRAFT_234215 hypothetical protein K10879 XRCC2; DNA-repair protein XRCC2
D Rad52 family proteins
E SELMODRAFT_447248 hypothetical protein K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E SELMODRAFT_137237 CHR25-2; hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E SELMODRAFT_109142 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E SELMODRAFT_441121 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E SELMODRAFT_412612 CHR25-1; hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E SELMODRAFT_421707 hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
E SELMODRAFT_407530 hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E SELMODRAFT_125799 hypothetical protein K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E SELMODRAFT_105080 hypothetical protein K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E SELMODRAFT_98462 hypothetical protein K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E SELMODRAFT_41328 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_41332 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_10140 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_90579 hypothetical protein K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
E SELMODRAFT_100480 hypothetical protein K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E SELMODRAFT_41328 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_41332 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_10140 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_121488 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_233065 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_168492 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_94303 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_416659 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_442045 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_413635 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_416641 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_416646 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_416654 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E SELMODRAFT_441216 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_89304 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_114787 hypothetical protein K07466 RFA1; replication factor A1
E SELMODRAFT_421246 hypothetical protein K10739 RFA2; replication factor A2
E SELMODRAFT_440021 hypothetical protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E SELMODRAFT_118556 PPX-2; hypothetical protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_100159 PPX-1; hypothetical protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_442684 hypothetical protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E SELMODRAFT_417373 hypothetical protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E SELMODRAFT_125510 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E SELMODRAFT_416323 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E SELMODRAFT_428420 hypothetical protein K15426 PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4
E SELMODRAFT_449561 hypothetical protein K15426 PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4
D AP-5 complex
E SELMODRAFT_75757 hypothetical protein K19022 AP5B1; AP-5 complex subunit beta-1
E SELMODRAFT_119137 hypothetical protein K19022 AP5B1; AP-5 complex subunit beta-1
E SELMODRAFT_176924 hypothetical protein K19023 AP5M1; AP-5 complex subunit mu-1
E SELMODRAFT_267388 hypothetical protein K19023 AP5M1; AP-5 complex subunit mu-1
E SELMODRAFT_108875 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
E SELMODRAFT_171350 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
E SELMODRAFT_407648 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
E SELMODRAFT_423327 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
E SELMODRAFT_423008 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
E SELMODRAFT_431515 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
E SELMODRAFT_431737 hypothetical protein K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E SELMODRAFT_174036 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E SELMODRAFT_157483 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E SELMODRAFT_60327 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E SELMODRAFT_60332 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E SELMODRAFT_123465 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E SELMODRAFT_115273 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E SELMODRAFT_424698 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E SELMODRAFT_414614 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E SELMODRAFT_438111 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E SELMODRAFT_438207 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E SELMODRAFT_410044 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E SELMODRAFT_442309 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E SELMODRAFT_428406 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E SELMODRAFT_447091 hypothetical protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E SELMODRAFT_442197 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SELMODRAFT_415832 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SELMODRAFT_66109 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E SELMODRAFT_85061 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SELMODRAFT_89678 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SELMODRAFT_410274 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SELMODRAFT_425660 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SELMODRAFT_92664 hypothetical protein K19026 SPG11; spatacsin
E SELMODRAFT_157234 hypothetical protein K19026 SPG11; spatacsin
E SELMODRAFT_420151 hypothetical protein K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E SELMODRAFT_443317 hypothetical protein K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E SELMODRAFT_270711 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E SELMODRAFT_230378 hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E SELMODRAFT_106890 hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E SELMODRAFT_128840 hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E SELMODRAFT_102606 hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E SELMODRAFT_35516 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E SELMODRAFT_119603 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E SELMODRAFT_236550 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E SELMODRAFT_97809 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E SELMODRAFT_165588 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E SELMODRAFT_135953 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E SELMODRAFT_165509 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E SELMODRAFT_78255 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E SELMODRAFT_74928 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E SELMODRAFT_86463 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E SELMODRAFT_451578 MRE11-2; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SELMODRAFT_451577 MRE11-1; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E SELMODRAFT_422836 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E SELMODRAFT_414166 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E SELMODRAFT_83116 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_106459 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_155063 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E SELMODRAFT_86291 hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E SELMODRAFT_89021 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E SELMODRAFT_104482 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E SELMODRAFT_112184 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E SELMODRAFT_78670 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E SELMODRAFT_432188 hypothetical protein K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
E SELMODRAFT_432347 hypothetical protein K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E SELMODRAFT_110491 hypothetical protein K15360 STRA13; centromere protein X
E SELMODRAFT_6339 UBC37-like protein, E2 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
E SELMODRAFT_5749 UBC37 like protein K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E SELMODRAFT_41328 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_41332 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_10140 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E SELMODRAFT_121488 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_233065 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_168492 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_94303 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SELMODRAFT_416659 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_442045 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_413635 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_416641 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_416646 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
E SELMODRAFT_416654 hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
E SELMODRAFT_408754 hypothetical protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E SELMODRAFT_236265 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_418853 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_432065 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_432067 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_138197 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_432061 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_429676 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_426715 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_127073 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_426728 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_426730 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_427181 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_128137 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_427183 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SELMODRAFT_408953 hypothetical protein K04482 RAD51; DNA repair protein RAD51
E SELMODRAFT_437220 hypothetical protein K11137 TELO2; telomere length regulation protein
E SELMODRAFT_139346 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
E SELMODRAFT_180574 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E SELMODRAFT_270060 FYPP-2; hypothetical protein K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_232099 FYPP3-1; hypothetical protein K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E SELMODRAFT_111896 hypothetical protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E SELMODRAFT_448856 hypothetical protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E SELMODRAFT_419685 hypothetical protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E SELMODRAFT_269871 hypothetical protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E SELMODRAFT_172852 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E SELMODRAFT_33764 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E SELMODRAFT_96537 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E SELMODRAFT_410333 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SELMODRAFT_136073 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D SELMODRAFT_90560 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D SELMODRAFT_87859 hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D SELMODRAFT_403334 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D SELMODRAFT_441472 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D SELMODRAFT_407478 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
D SELMODRAFT_445125 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D SELMODRAFT_413713 hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
D SELMODRAFT_443228 hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D SELMODRAFT_228869 UBC1-2; ubiquitin-conjugating enzyme 1, E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SELMODRAFT_228475 UBC1-3; ubiquitin-conjugating enzyme 1, E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SELMODRAFT_271478 UBC1-1; ubiquitin-conjugating enzyme 1, E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SELMODRAFT_228312 UBC1-4; ubiquitin-conjugating enzyme 1, E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SELMODRAFT_450631 ubiquitin-conjugating enzyme 1, E2-like protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SELMODRAFT_185331 ubiquitin-conjugating enzyme 1, E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SELMODRAFT_408 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D SELMODRAFT_110695 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D SELMODRAFT_427193 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D SELMODRAFT_40849 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D SELMODRAFT_450668 MMZ3-3; MMS ZWEI-like protein 3, E2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D SELMODRAFT_450666 MMZ4-1; MMS ZWEI-like protein 4, E2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D SELMODRAFT_138489 MMZ3-2; ubiquitin-conjugating enzyme K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D SELMODRAFT_450667 MMZ4-2; MMS ZWEI-like protein 4, E2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D SELMODRAFT_450669 MMZ3-4; MMS ZWEI-like protein 3, E2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D SELMODRAFT_116003 UBC35-1; ubiquitin-conjugating enzyme 35, E2 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D SELMODRAFT_134879 UBC35-2; ubiquitin-conjugating enzyme 35, E2 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D SELMODRAFT_105735 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
D SELMODRAFT_233576 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D SELMODRAFT_119863 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D SELMODRAFT_97475 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D SELMODRAFT_108915 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D SELMODRAFT_231534 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D SELMODRAFT_404961 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D SELMODRAFT_102024 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D SELMODRAFT_427013 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D SELMODRAFT_123078 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D SELMODRAFT_90486 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D SELMODRAFT_235493 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D SELMODRAFT_121188 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D SELMODRAFT_234901 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D SELMODRAFT_236274 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D SELMODRAFT_119010 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D SELMODRAFT_131813 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D SELMODRAFT_404961 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D SELMODRAFT_102024 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D SELMODRAFT_406588 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D SELMODRAFT_426137 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D SELMODRAFT_427792 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D SELMODRAFT_437220 hypothetical protein K11137 TELO2; telomere length regulation protein
D SELMODRAFT_413376 hypothetical protein K23115 TTI2; TELO2-interacting protein 2
D SELMODRAFT_423529 hypothetical protein K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D SELMODRAFT_403529 hypothetical protein K23390 BAG6; large proline-rich protein BAG6
D SELMODRAFT_441391 hypothetical protein K23390 BAG6; large proline-rich protein BAG6
D SELMODRAFT_420863 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
D SELMODRAFT_92949 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D SELMODRAFT_110199 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D SELMODRAFT_128358 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D SELMODRAFT_125024 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D SELMODRAFT_130952 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D SELMODRAFT_184464 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_4601 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_439395 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_234423 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_229825 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_230088 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_4598 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SELMODRAFT_451533 WEE1-1; hypothetical protein K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D SELMODRAFT_451532 WEE1-2; hypothetical protein K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D SELMODRAFT_230913 hypothetical protein K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D SELMODRAFT_85451 hypothetical protein K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D SELMODRAFT_108317 hypothetical protein K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D SELMODRAFT_439222 hypothetical protein K22422 DONSON; protein downstream neighbor of Son
D SELMODRAFT_442995 hypothetical protein K22422 DONSON; protein downstream neighbor of Son
D SELMODRAFT_426754 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D SELMODRAFT_267596 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D SELMODRAFT_234670 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
D SELMODRAFT_98524 hypothetical protein K24770 DSE1; protein decreased size exclusion limit 1
D SELMODRAFT_127123 hypothetical protein K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D SELMODRAFT_426902 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D SELMODRAFT_438609 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D SELMODRAFT_236910 hypothetical protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D SELMODRAFT_415475 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D SELMODRAFT_449005 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D SELMODRAFT_96540 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D SELMODRAFT_409901 hypothetical protein K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D SELMODRAFT_100130 hypothetical protein K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D SELMODRAFT_234862 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D SELMODRAFT_174095 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D SELMODRAFT_84652 hypothetical protein K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D SELMODRAFT_117709 hypothetical protein K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D SELMODRAFT_98354 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D SELMODRAFT_95358 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D SELMODRAFT_40953 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
D SELMODRAFT_413336 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D SELMODRAFT_437541 PUB59-1; ubiquitin-protein ligase, PUB59 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D SELMODRAFT_168695 PUB59-2; ubiquitin-protein ligase, PUB59 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D SELMODRAFT_179572 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D SELMODRAFT_113921 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D SELMODRAFT_233652 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D SELMODRAFT_420607 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D SELMODRAFT_116436 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D SELMODRAFT_183070 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D SELMODRAFT_129290 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D SELMODRAFT_115108 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
D SELMODRAFT_408653 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D SELMODRAFT_5768 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELMODRAFT_232059 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELMODRAFT_232799 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELMODRAFT_109545 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D SELMODRAFT_156827 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D SELMODRAFT_173451 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D SELMODRAFT_175019 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SELMODRAFT_96351 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SELMODRAFT_97206 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SELMODRAFT_78447 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_66695 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_46637 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_46714 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELMODRAFT_137389 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SELMODRAFT_232080 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SELMODRAFT_1746 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SELMODRAFT_46169 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SELMODRAFT_56390 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SELMODRAFT_90743 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SELMODRAFT_56855 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SELMODRAFT_130680 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SELMODRAFT_98461 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SELMODRAFT_75016 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SELMODRAFT_170576 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SELMODRAFT_85281 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E SELMODRAFT_116252 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
E SELMODRAFT_82310 hypothetical protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SELMODRAFT_82310 hypothetical protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SemoP_p005 rpoB; RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SemoP_p006 rpoC1; RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SemoP_p007 rpoC2; RNA polymerase beta'' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SemoP_p046 rpoA; RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SELMODRAFT_236869 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
E SELMODRAFT_141299 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E SELMODRAFT_440287 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E SELMODRAFT_411277 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E SELMODRAFT_115961 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E SELMODRAFT_448693 hypothetical protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
E SELMODRAFT_105715 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
E SELMODRAFT_98813 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
E SELMODRAFT_416649 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
E SELMODRAFT_416656 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
E SELMODRAFT_416615 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
E SELMODRAFT_416617 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
E SELMODRAFT_444354 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SELMODRAFT_446963 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SELMODRAFT_126010 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SELMODRAFT_111960 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SELMODRAFT_405784 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SELMODRAFT_162108 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F SELMODRAFT_408296 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SELMODRAFT_402571 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D SELMODRAFT_440287 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SELMODRAFT_411277 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SELMODRAFT_115961 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SELMODRAFT_448693 hypothetical protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D SELMODRAFT_5768 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELMODRAFT_232059 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELMODRAFT_232799 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024