+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus mutans UA159 (serotype c)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SMU_1652 ogt; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SMU_1215 ung; putative uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SMU_2120c putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SMU_1865 mutY; putative A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SMU_1650 end3; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SMU_814 mutT; putative MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMU_1455 mutX; mutator protein, pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMU_561c putative hydrolase (MutT family) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMU_325 putative dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SMU_1652 ogt; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SMU_1215 ung; putative uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SMU_2120c putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SMU_1865 mutY; putative A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SMU_2087 tagI; putative 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SMU_1614 fpg; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SMU_1650 end3; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SMU_1649 exoA; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SMU_1472 recJ; putative single-strand DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SMU_1543 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SMU_297 polI; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SMU_1851 uvrA; putative excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A E SMU_809 uvrB; excinuclease ABC (subunit B); helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B E SMU_1241 uvrC; putative excinuclease ABC (subunit C) K03703 uvrC; excinuclease ABC subunit C E SMU_1174 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMU_297 polI; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E SMU_1543 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SMU_1990 rpoB; DNA-dependent RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SMU_1989 rpoC; DNA-dependent RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SMU_2001 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SMU_96 rpoE; putative DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F SMU_479 rpoZ; RNA polymerase-associated protein RpoZ, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SMU_08 trcF; putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SMU_2091c DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E SMU_1870 mutS2; putative DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SMU_2089 hexB; putative mismatch repair protein HexB K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SMU_580 putative exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SMU_581 putative exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SMU_1192 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SMU_123 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SMU_02 dnaN; putative DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SMU_628 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SMU_1662 holB; putative DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SMU_1581 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SMU_1543 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SMU_1174 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMU_1859 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SMU_1967 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SMU_504 dam; putative site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SMU_1875 putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SMU_2085 recA; recombination protein RecA K03553 recA; recombination protein RecA E SMU_2088 ruvA; putative Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SMU_64 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SMU_480 priA; primosomal replication factor Y (primosomal protein N') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SMU_2085 recA; recombination protein RecA K03553 recA; recombination protein RecA E SMU_327 putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms E SMU_2156 recF; putative RecF protein, ATPase involved in DNA repair K03629 recF; DNA replication and repair protein RecF E SMU_1833 recG; putative ATP-dependent DNA helicase, RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SMU_1472 recJ; putative single-strand DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SMU_25 recO; putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SMU_598 recM; putative recombination protein RecM K06187 recR; recombination protein RecR E SMU_585 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SMU_469 recU; putative recombination protein U K03700 recU; recombination protein U E SMU_2088 ruvA; putative Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SMU_64 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SMU_1499 rexA; putative exonuclease RexA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SMU_1500 rexB; putative exonuclease RexB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SMU_1114 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SMU_1277 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SMU_1002 topA; putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SMU_589 putative DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SMU_1472 recJ; putative single-strand DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SMU_25 recO; putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SMU_598 recM; putative recombination protein RecM K06187 recR; recombination protein RecR F SMU_1543 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SMU_1851 uvrA; putative excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A F SMU_809 uvrB; excinuclease ABC (subunit B); helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SMU_403 putative DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SMU_2085 recA; recombination protein RecA K03553 recA; recombination protein RecA D SMU_585 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SMU_1859 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SMU_1967 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SMU_1780 conserved hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SMU_1313c putative ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit (3'-5' exonuclease) K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SMU_814 mutT; putative MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMU_1455 mutX; mutator protein, pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMU_561c putative hydrolase (MutT family) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMU_325 putative dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SMU_668c ribonucleotide reductase, large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SMU_667 nrdG; putative ribonucleotide reductase, small subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SMU_1297 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024