+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sulfurospirillum multivorans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SMUL_3220 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SMUL_1368 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SMUL_0008 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SMUL_0010 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SMUL_1922 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SMUL_1878 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SMUL_3220 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SMUL_1021 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SMUL_0269 putative transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SMUL_1368 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SMUL_0008 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SMUL_1205 putative uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SMUL_0010 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SMUL_2636 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SMUL_1922 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SMUL_2162 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SMUL_0191 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E SMUL_0100 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SMUL_1953 ligA1; DNA ligase [NAD(+)] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E SMUL_0729 UvrABC system protein A, excinuclease K03701 uvrA; excinuclease ABC subunit A E SMUL_2239 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E SMUL_0769 UvrABC system protein excinuclease C K03703 uvrC; excinuclease ABC subunit C E SMUL_2021 ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial type 1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMUL_2272 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMUL_1953 ligA1; DNA ligase [NAD(+)] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SMUL_0485 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SMUL_0486 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SMUL_2678 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SMUL_1354 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta F SMUL_0851 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SMUL_2251 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SMUL_0811 mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS E SMUL_0664 recombination inhibitory protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E SMUL_0358 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SMUL_0658 exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E SMUL_1190 exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E SMUL_0833 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SMUL_0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SMUL_1100 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SMUL_1957 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SMUL_1040 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SMUL_2243 DNA polymerase III subunit epsilon family exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SMUL_0598 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SMUL_1953 ligA1; DNA ligase [NAD(+)] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SMUL_2021 ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial type 1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMUL_2272 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMUL_1832 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SMUL_1098 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SMUL_1787 site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SMUL_3135 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SMUL_2647 UvrD/REP helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SMUL_3201 recA; RecA protein K03553 recA; recombination protein RecA E SMUL_1477 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SMUL_0556 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SMUL_3301 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SMUL_2234 primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SMUL_1511 putative nuclease, SbcC-like K03546 sbcC; DNA repair protein SbcC/Rad50 E SMUL_0431 putative endo/exonuclease ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E SMUL_0430 putative endo/exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 E SMUL_1510 putative nuclease, SbcD-like K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SMUL_3201 recA; RecA protein K03553 recA; recombination protein RecA E SMUL_1120 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SMUL_1088 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SMUL_0100 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SMUL_0745 recR; recombination protein RecR K06187 recR; recombination protein RecR E SMUL_0862 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SMUL_1477 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SMUL_0556 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SMUL_3301 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SMUL_1147 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E SMUL_1511 putative nuclease, SbcC-like K03546 sbcC; DNA repair protein SbcC/Rad50 E SMUL_0431 putative endo/exonuclease ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E SMUL_0430 putative endo/exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 E SMUL_1510 putative nuclease, SbcD-like K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SMUL_0397 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SMUL_0003 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SMUL_1736 putative topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SMUL_3195 top1; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SMUL_1597 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F SMUL_1778 DNA-binding protein HU, epsilon-proteobacterial type K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SMUL_0100 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SMUL_0745 recR; recombination protein RecR K06187 recR; recombination protein RecR F SMUL_1953 ligA1; DNA ligase [NAD(+)] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SMUL_2182 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SMUL_0729 UvrABC system protein A, excinuclease K03701 uvrA; excinuclease ABC subunit A F SMUL_2239 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SMUL_1740 putative DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SMUL_2849 polA; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SMUL_3201 recA; RecA protein K03553 recA; recombination protein RecA D SMUL_0862 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SMUL_1832 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SMUL_1098 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SMUL_1244 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D SMUL_0174 hypothetical protein K14623 dinD; DNA-damage-inducible protein D B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D SMUL_1878 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMUL_0109 nrdA; ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SMUL_0103 nrdB; ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SMUL_0320 putative bifunctional oligoribonuclease and PAP phosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024