+E Transcription factors KO
#
Transcription Factors - Serratia marcescens WW4
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D SMWW4_v1c05890 AraC family transcriptional regulator K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D SMWW4_v1c08210 chbR; rRepressor, chb operon for N,N'-diacetylchitobiose utilization K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D SMWW4_v1c18910 AraC family transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SMWW4_v1c05390 AraC family transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SMWW4_v1c06710 rob; right oriC-binding transcriptional activator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SMWW4_v1c15050 AraC family transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SMWW4_v1c41240 AraC family transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SMWW4_v1c09220 AraC family transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D SMWW4_v1c09400 feaR; DNA-binding transcriptional activator for tynA and feaB K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D SMWW4_v1c09210 AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D SMWW4_v1c39830 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D SMWW4_v1c23540 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D SMWW4_v1c09430 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D SMWW4_v1c36570 alkA; 3-methyl-adenine DNA glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D SMWW4_v1c13160 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c13480 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c24270 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c32330 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c30720 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c24800 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c39260 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c00800 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SMWW4_v1c46860 ilvY; DNA-binding transcriptional dual regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D SMWW4_v1c02430 metR; DNA-binding transcriptional activator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D SMWW4_v1c06870 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D SMWW4_v1c47050 oxyR; DNA-binding transcriptional dual regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D SMWW4_v1c40370 argP; DNA-binding transcriptional activator, replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SMWW4_v1c07320 leuO; DNA-binding transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D SMWW4_v1c11080 allS; DNA-binding transcriptional activator of the allD operon K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D SMWW4_v1c15180 cynR; transcriptional activator of cyn operon, autorepressor K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D SMWW4_v1c26530 cysB; O-acetyl-L-serine-binding transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D SMWW4_v1c29130 transcriptional regulator CysB-like protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D SMWW4_v1c35060 dsdC; DNA-binding transcriptional dual regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D SMWW4_v1c41640 abgR; putative DNA-binding transcriptional regulator of abgABT operon K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D SMWW4_v1c32990 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D SMWW4_v1c40500 dmlR; DNA-binding transcriptional activator for dmlA K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D SMWW4_v1c05290 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D SMWW4_v1c22830 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D SMWW4_v1c31790 nac; DNA-binding transcriptional dual regulator of nitrogen assimilation K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D SMWW4_v1c43600 aaeR; p-hydroxybenzoic acid efflux system transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D SMWW4_v1c22350 LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D SMWW4_v1c05560 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D SMWW4_v1c03350 transcriptional regulator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D SMWW4_v1c46980 hdfR; DNA-binding transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D SMWW4_v1c32650 ycjZ; putative DNA-binding transcriptional regulator K24082 pgrR; LysR family transcriptional regulator, regulator of peptidoglycan recycling
C DeoR family
D SMWW4_v1c16280 deoR; DNA-binding transcriptional repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D SMWW4_v1c45920 glpR; DNA-binding transcriptional repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D SMWW4_v1c23810 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D SMWW4_v1c39680 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D SMWW4_v1c25580 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D SMWW4_v1c40170 DeoR family transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D SMWW4_v1c36860 srlR; DNA-bindng transcriptional repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
C LacI family
D SMWW4_v1c24420 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c20730 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c15460 galS; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c45190 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c39530 galR; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c32910 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c48140 rbsR; DNA-binding transcriptional repressor of ribose metabolism K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c26980 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c44340 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMWW4_v1c00520 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D SMWW4_v1c47210 cytR; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D SMWW4_v1c07360 cra; DNA-binding transcriptional repressor-activator for carbon metabolism K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D SMWW4_v1c41720 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D SMWW4_v1c04760 treR; DNA-binding transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D SMWW4_v1c05120 LacI family transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D SMWW4_v1c22240 purR; hypoxanthine-binding transcriptional repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D SMWW4_v1c46030 gntR; DNA-binding transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D SMWW4_v1c39910 idnR; 5-gluconate-binding transcriptional repressor K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D SMWW4_v1c19840 ebgR; DNA-binding transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D SMWW4_v1c22820 malI; transcriptional repressor of Mal regulon K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D SMWW4_v1c04650 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D SMWW4_v1c20970 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SMWW4_v1c41840 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D SMWW4_v1c38170 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D SMWW4_v1c27610 fadR; DNA-binding transcriptional dual regulator of fatty acid metabolism K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D SMWW4_v1c41170 pdhR; DNA-binding transcriptional dual regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SMWW4_v1c42850 exuR; DNA-binding transcriptional repressor K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D SMWW4_v1c20470 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SMWW4_v1c38430 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SMWW4_v1c46320 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SMWW4_v1c42710 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SMWW4_v1c34690 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SMWW4_v1c36790 ydfH; putative DNA-binding transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D SMWW4_v1c24900 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D SMWW4_v1c14940 betI; DNA-binding transcriptional repressor K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D SMWW4_v1c39810 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D SMWW4_v1c10670 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D SMWW4_v1c47770 slmA; DNA-binding anti-FtsZ division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D SMWW4_v1c22320 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SMWW4_v1c14580 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D SMWW4_v1c13740 ycfQ; repressor for bhsA(ycfR) K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D SMWW4_v1c47030 fabR; DNA-binding transcriptional repressor K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D SMWW4_v1c12990 ybiH; putative DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D SMWW4_v1c48240 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D SMWW4_v1c16770 lrp; leucine-binding transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SMWW4_v1c14410 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SMWW4_v1c10490 ybaO; putative DNA-binding transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D SMWW4_v1c32340 LuxR family transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D SMWW4_v1c46840 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D SMWW4_v1c04970 transcriptional activator protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D SMWW4_v1c30750 rcsA; DNA-binding transcriptional activator, co-regulator with RcsB K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D SMWW4_v1c36100 hypothetical protein K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D SMWW4_v1c14980 LuxR family transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D SMWW4_v1c45890 malT; DNA-binding transcriptional activator for the mal regulon and maltotriose-ATP-binding protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D SMWW4_v1c22430 slyA; DNA-binding transcriptional activator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D SMWW4_v1c24370 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D SMWW4_v1c38630 mprA; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D SMWW4_v1c23270 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D SMWW4_v1c05410 MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D SMWW4_v1c01380 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D SMWW4_v1c11050 cueR; MerR family transcriptional regulator, copper efflux regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SMWW4_v1c24200 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SMWW4_v1c44800 zntR; DNA-binding transcriptional activator in response to Zn(II) K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D SMWW4_v1c17580 soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D SMWW4_v1c12010 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SMWW4_v1c44250 zur; Zn(II)-binding transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D SMWW4_v1c44590 iclR; DNA-binding transcriptional repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D SMWW4_v1c24770 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D SMWW4_v1c30490 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D SMWW4_v1c11100 allR; DNA-binding transcriptional repressor K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D SMWW4_v1c21410 kdgR; DNA-binding transcriptional regulator f kdgK, kdgT, eda K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D SMWW4_v1c45350 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SMWW4_v1c25630 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SMWW4_v1c46420 transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D SMWW4_v1c37320 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D SMWW4_v1c03790 nsrR; nitric oxide-sensitive repressor for NO regulon K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D SMWW4_v1c18880 transcriptional regulator, BadM/Rrf2 family K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D SMWW4_v1c30630 arsR; DNA-binding transcriptional repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D SMWW4_v1c22610 ydcN; putative DNA-binding transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D SMWW4_v1c18750 mntR; DNA-binding transcriptional regulator of mntH K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D SMWW4_v1c27820 yebK; putative DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D SMWW4_v1c02700 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DNA-binding transcriptional repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SMWW4_v1c43890 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SMWW4_v1c06680 trpR; tryptophan-binding transcriptional repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D SMWW4_v1c14430 prpR; propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D SMWW4_v1c04120 sfsB; DNA-binding transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D SMWW4_v1c07240 sgrR; transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D SMWW4_v1c06590 nadR; bifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D SMWW4_v1c20850 puuR; DNA-binding transcriptional repressor for the puu divergon K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D SMWW4_v1c33130 cupin K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D SMWW4_v1c43360 higA; antitoxinof the HigB-HigA toxin-antitoxin system K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D SMWW4_v1c23980 putative transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D SMWW4_v1c10790 cdaR; transcriptional regulator CdaR K02647 cdaR; carbohydrate diacid regulator
D SMWW4_v1c12620 modE; DNA-binding transcriptional repressor for the molybdenum transport operon modABC K02019 modE; molybdate transport system regulatory protein
D SMWW4_v1c24660 hypothetical protein K21829 dauR; D-arginine utilization repressor
D SMWW4_v1c29790 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D SMWW4_v1c47180 metJ; S-adenosylmethionine-binding transcriptional repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D SMWW4_v1c29300 putA; proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D SMWW4_v1c09940 bglG; transcriptional antiterminator of the bgl operon K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D SMWW4_v1c10360 bolA; stationary-phase morphogene K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D SMWW4_v1c02580 rfaH; DNA-binding transcriptional antiterminator K05785 rfaH; transcriptional antiterminator RfaH
D SMWW4_v1c04100 argR; L-arginine-binding transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D SMWW4_v1c11930 nagC; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine K02565 nagC; N-acetylglucosamine repressor
D SMWW4_v1c23000 dgsA; DNA-binding transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D SMWW4_v1c00620 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D SMWW4_v1c31720 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D SMWW4_v1c26020 tyrR; tyrosine-binding transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D SMWW4_v1c38900 cadC4; transcriptional regulator CadC K03765 cadC; transcriptional activator of cad operon
D SMWW4_v1c36210 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D SMWW4_v1c31050 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D SMWW4_v1c26090 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D SMWW4_v1c26060 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D SMWW4_v1c42020 dhaR; DNA-binding transcription activator of the dhaKLM operon K05880 dhaR; transcriptional activator for dhaKLM operon
D SMWW4_v1c43470 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D SMWW4_v1c00950 alpA; phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D SMWW4_v1c06100 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D SMWW4_v1c09000 hypothetical protein K07733 alpA; prophage regulatory protein
D SMWW4_v1c14500 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D SMWW4_v1c41300 hypothetical protein K07735 algH; putative transcriptional regulator
D SMWW4_v1c19010 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D SMWW4_v1c40940 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D SMWW4_v1c10140 hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D SMWW4_v1c08910 crl; sigma factor-binding protein K11926 crl; sigma factor-binding protein Crl
D SMWW4_v1c07380 mraZ; RsmH methytransferase inhibitor K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0