+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Sinorhizobium meliloti SM11

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SM11_chr0735 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SM11_chr0736 era; GTP-binding protein Era K03595 era; GTPase C SM11_chr3284 cgtA; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SM11_chr1594 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C SM11_chr3711 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C SM11_chr2448 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C SM11_chr1451 nusG1; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG C SM11_chr1896 nusG2; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG C SM11_chr2229 nusG3; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SM11_chr2515 ksgA; putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SM11_chr3448 sun; putative sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SM11_chr3800 sun2; probabable Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SM11_chr3719 rsmC; probabable ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SM11_chr0457 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SM11_chr0425 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SM11_chr3460 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SM11_chr1133 mraW; probabable SAM-dependent methytransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SM11_chr3813 uroporphyrin-III C/tetrapyrrole methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SM11_chr0534 probabable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D SM11_chr2237 putative tRNA/rRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SM11_chr0410 ftsJ; cell division protein ftsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D SM11_chr3289 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SM11_chr0022 probabable SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SM11_chr2486 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D SM11_chr3342 Ribosomal RNA large subunit methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SM11_chr0534 probabable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D SM11_chr0533 putative RNA methyltransferase protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SM11_chr0456 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SM11_pD0023 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SM11_chr2183 rluC; ribosomal large subunit pseudouridine synthase C protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D SM11_chr2888 rluD; putative ribosomal large subunit pseudouridine synthase protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C SM11_chr0037 rimI; peptide N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SM11_chr0575 rimJ; ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C SM11_chr3371 rimM; 16S rRNA-processing protein K02860 rimM; 16S rRNA processing protein RimM C SM11_pC0120 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SM11_chr1163 prmA; putative ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C SM11_chr0735 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C SM11_chr2248 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C SM11_chr2265 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SM11_chr0063 deaD; putative ATP-dependent RNA helicase protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C SM11_chr0736 era; GTP-binding protein Era K03595 era; GTPase C SM11_pD0478 engA; putative GTP-binding protein K03977 engA; GTPase C SM11_chr3284 cgtA; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C SM11_chr2103 hflX; putative GTP-binding protein K03665 hflX; GTPase B Other maturation factors C SM11_chr0523 Hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SM11_chr0728 relA; putative GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SM11_chr3714 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C SM11_chr3710 hypothetical protein K09748 rimP; ribosome maturation factor RimP C SM11_chr3288 iojap-like protein K09710 ybeB; ribosome-associated protein C SM11_chr0041 hypothetical protein K07042 ybeY; probable rRNA maturation factor C SM11_chr0013 yfiA; SIGMA54 modulation protein K05808 hpf; ribosome hibernation promoting factor C SM11_chr0823 engD; putative GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024