+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sinorhizobium meliloti SM11

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SM11_pD0205 putative methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SM11_pC1562 Hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SM11_chr3098 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SM11_pD0204 putative 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SM11_chr0584 mutY; A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SM11_chr3639 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SM11_chr2783 mutT; putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SM11_chr3822 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SM11_pD0205 putative methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SM11_chr0070 ada1; putative methylated-DNA--protein-cysteine methyltransferase transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SM11_chr3637 ada2; putative methylated-DNA--protein-cysteine methyltransferase transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SM11_chr3512 alkB; Alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E SM11_pC1562 Hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SM11_chr3098 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SM11_chr0695 putative DNA polymerase bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SM11_pD0342 putative DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SM11_chr2797 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SM11_pD0204 putative 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SM11_chr0584 mutY; A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SM11_chr0436 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SM11_chr3845 mutM; probabable formamidopyrimidine-dna glycosylase protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SM11_chr3639 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SM11_chr1759 xthA1; probabable exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SM11_chr2048 xthA2; putative exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SM11_pD0223 xthA4; probabable exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SM11_chr3328 xthA3; putative exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SM11_chr1678 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SM11_chr1153 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SM11_chr3647 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SM11_chr2008 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SM11_chr1496 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SM11_chr2492 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SM11_chr1174 uvrD1; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM11_chr0892 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM11_pC0046 uvrD2; UvrD2 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM11_chr3647 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SM11_chr1153 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SM11_chr2224 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SM11_chr2223 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SM11_chr2192 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SM11_chr0727 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SM11_chr1757 mfd; transcription-repair coupling factor (TRCF) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SM11_chr0029 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SM11_chr0469 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SM11_chr3774 xseA; putative exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SM11_chr0537 xseB; putative exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SM11_chr2285 dnaE1; putative DNA polymerase III alpha chain protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SM11_chr3812 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SM11_chr2508 putative DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SM11_chr3457 putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SM11_chr1957 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SM11_pC1603 conserved hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SM11_chr3470 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SM11_chr3704 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SM11_chr1153 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SM11_chr1174 uvrD1; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM11_chr0892 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM11_pC0046 uvrD2; UvrD2 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SM11_chr2007 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SM11_chr1599 recA; recombinase A K03553 recA; recombination protein RecA E SM11_chr2914 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E SM11_chr2913 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SM11_chr2915 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SM11_chr3218 priA; probabable primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SM11_chr1599 recA; recombinase A K03553 recA; recombination protein RecA E SM11_chr2538 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E SM11_chr3660 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E SM11_chr1755 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SM11_chr1678 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SM11_chr0753 recO; probabable RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SM11_chr3707 recR; Recombination protein recR K06187 recR; recombination protein RecR E SM11_chr1152 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SM11_chr2914 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E SM11_chr2913 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SM11_chr2915 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E SM11_chr3498 ATP-dependent nuclease / helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SM11_chr3499 addB; Double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SM11_chr0623 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SM11_pC1480 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E SM11_pD0372 hypothetical protein K10979 ku; DNA end-binding protein Ku E SM11_pD0373 hypothetical protein K10979 ku; DNA end-binding protein Ku E SM11_pD0226 putative DNA ligase K10979 ku; DNA end-binding protein Ku E SM11_chr2371 ligD; DNA polymerase LigD ligase region K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM11_pC1481 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM11_pD0393 Hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM11_chr2907 probabable ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM11_pC1486 conserved hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SM11_pD0933 putative ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SM11_chr2005 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SM11_chr3477 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SM11_pD0345 putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SM11_chr2274 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SM11_chr2339 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SM11_chr1678 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SM11_chr0753 recO; probabable RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SM11_chr3707 recR; Recombination protein recR K06187 recR; recombination protein RecR F SM11_chr1153 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SM11_chr2440 himA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SM11_chr0019 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SM11_chr0862 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SM11_chr2008 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SM11_chr1496 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SM11_pC1065 putative DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SM11_pC0028 Nucleotidyltransferase/DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SM11_chr2283 dinB1; putative DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SM11_chr1599 recA; recombinase A K03553 recA; recombination protein RecA D SM11_chr1947 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SM11_chr1152 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SM11_pC1064 conserved hypothetical protein K14160 imuA; protein ImuA D SM11_chr3298 hypothetical protein K14160 imuA; protein ImuA D SM11_pC1063 conserved hypothetical protein K14161 imuB; protein ImuB D SM11_chr3297 imuB; putative DNA polymerase K14161 imuB; protein ImuB D SM11_pC1061 dnaE3-2; DnaE3 putative DNA polymerase III alpha chain K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SM11_chr3296 dnaE2; putative DNA polymerase III alpha chain protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SM11_chr2007 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SM11_chr0167 lhr; putative ATP-dependent helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SM11_chr2783 mutT; putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SM11_chr3822 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SM11_chr2010 nrdJ; Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024