+F Repair protein KO
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DNA Repair and Recombination Proteins - Sneathia vaginalis
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E VC03_04965 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E VC03_02010 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E VC03_03560 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D VC03_06235 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VC03_02810 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D VC03_04350 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E VC03_04965 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E VC03_02010 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E VC03_05280 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E VC03_03560 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E VC03_04945 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E VC03_00245 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E VC03_03930 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E VC03_02445 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E VC03_01750 hypothetical protein K03703 uvrC; excinuclease ABC subunit C
E VC03_02045 ATPase AAA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F VC03_05745 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F VC03_05740 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F VC03_02485 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F VC03_05010 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
E TRCF (transcription-repair coupling factor)
F VC03_00025 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E VC03_06055 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E VC03_03535 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E VC03_05000 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E VC03_02450 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E VC03_03185 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E VC03_04655 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E VC03_03460 hypothetical protein K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E VC03_02555 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E VC03_03825 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E VC03_03310 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E VC03_02045 ATPase AAA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VC03_02770 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E VC03_04210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E VC03_04590 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E VC03_05955 recombinase RecA K03553 recA; recombination protein RecA
E VC03_03505 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA
E VC03_05835 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E VC03_04280 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E VC03_06295 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E VC03_05955 recombinase RecA K03553 recA; recombination protein RecA
E VC03_03880 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E VC03_00015 hypothetical protein K03629 recF; DNA replication and repair protein RecF
E VC03_05760 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E VC03_05940 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E VC03_05320 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E VC03_00245 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E VC03_01815 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
E VC03_04770 recombinase RecR K06187 recR; recombination protein RecR
E VC03_05570 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E VC03_03505 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA
E VC03_05835 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E VC03_04280 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E VC03_02980 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F VC03_01570 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F VC03_01565 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F VC03_05300 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F VC03_02585 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F VC03_06145 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F VC03_02765 recombinase RecT K07455 recT; recombination protein RecT
F VC03_00245 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F VC03_01815 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
F VC03_04770 recombinase RecR K06187 recR; recombination protein RecR
F VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F VC03_03930 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F VC03_02445 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D VC03_01070 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D VC03_05955 recombinase RecA K03553 recA; recombination protein RecA
D VC03_05570 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D VC03_02770 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D VC03_04210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VC03_05950 hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D VC03_03935 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D VC03_06235 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VC03_02810 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D VC03_04350 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D VC03_05165 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VC03_05175 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D VC03_05230 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024