+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sneathia vaginalis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E VC03_04965 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VC03_02010 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VC03_03560 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D VC03_06235 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VC03_02810 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D VC03_04350 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E VC03_04965 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VC03_02010 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VC03_05280 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E VC03_03560 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E VC03_04945 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E VC03_00245 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E VC03_03930 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E VC03_02445 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E VC03_01750 hypothetical protein K03703 uvrC; excinuclease ABC subunit C E VC03_02045 ATPase AAA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F VC03_05745 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F VC03_05740 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F VC03_02485 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F VC03_05010 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta E TRCF (transcription-repair coupling factor) F VC03_00025 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E VC03_06055 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E VC03_03535 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E VC03_05000 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E VC03_02450 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E VC03_03185 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E VC03_04655 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E VC03_03460 hypothetical protein K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E VC03_02555 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E VC03_03825 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VC03_03310 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E VC03_02045 ATPase AAA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E VC03_02770 hypothetical protein K03111 ssb; single-strand DNA-binding protein E VC03_04210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E VC03_04590 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E VC03_05955 recombinase RecA K03553 recA; recombination protein RecA E VC03_03505 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E VC03_05835 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E VC03_04280 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E VC03_06295 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E VC03_05955 recombinase RecA K03553 recA; recombination protein RecA E VC03_03880 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E VC03_00015 hypothetical protein K03629 recF; DNA replication and repair protein RecF E VC03_05760 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E VC03_05940 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E VC03_05320 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E VC03_00245 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E VC03_01815 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E VC03_04770 recombinase RecR K06187 recR; recombination protein RecR E VC03_05570 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) E VC03_03505 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E VC03_05835 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E VC03_04280 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E VC03_02980 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F VC03_01570 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F VC03_01565 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F VC03_05300 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F VC03_02585 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F VC03_06145 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F VC03_02765 recombinase RecT K07455 recT; recombination protein RecT F VC03_00245 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F VC03_01815 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F VC03_04770 recombinase RecR K06187 recR; recombination protein RecR F VC03_04975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F VC03_03930 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F VC03_02445 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D VC03_01070 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D VC03_05955 recombinase RecA K03553 recA; recombination protein RecA D VC03_05570 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) D VC03_02770 hypothetical protein K03111 ssb; single-strand DNA-binding protein D VC03_04210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D VC03_05950 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D VC03_03935 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D VC03_06235 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VC03_02810 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D VC03_04350 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D VC03_05165 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D VC03_05175 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D VC03_05230 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024