+F Repair protein KO
#
DNA Repair and Recombination Proteins - Spinacia oleracea (spinach)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 110800316 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 110789885 DExH-box ATP-dependent RNA helicase DExH14 isoform X1 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 110784401 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 110802953 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 110796595 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 110782864 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 110782125 uncharacterized protein LOC110782125 isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 110795030 N-glycosylase/DNA lyase OGG1 isoform X1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 110788081 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 110789100 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 110803627 DNA-(apurinic or apyrimidinic site) endonuclease 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 110801005 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 110793333 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 110803974 DNA polymerase delta small subunit-like K02328 POLD2; DNA polymerase delta subunit 2
F 110786246 uncharacterized protein LOC110786246 K03504 POLD3; DNA polymerase delta subunit 3
F 110783365 uncharacterized protein LOC110783365 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 110791677 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 110786096 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 110796074 DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 110792686 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 110798551 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110805675 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110791391 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 110775314 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 110787784 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 110776166 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 110791642 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 110796091 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 110782885 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 110784207 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 110779033 poly [ADP-ribose] polymerase 2 isoform X1 K28005 PARP2; poly [ADP-ribose] polymerase 2 [EC:2.4.2.30]
E 110785342 protein ADP-ribosyltransferase PARP3 K10798 PARP3_4; protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 110794105 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 110783466 ubiquitin receptor RAD23c-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 110786884 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
F 110793831 probable ubiquitin receptor RAD23a K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 110798000 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110804025 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110792205 cullin-4 K10609 CUL4; cullin 4
F 110799010 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 110803053 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 110778137 uncharacterized protein LOC110778137 K15082 RAD7; DNA repair protein RAD7
F 110795680 DNA repair protein RAD16 isoform X1 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 110793208 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 110788080 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 110791126 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 110785145 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 110787530 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 110777633 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110777702 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110784946 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110798912 DNA-directed RNA polymerase V subunit 5C-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110799567 DNA-directed RNA polymerases II, IV and V subunit 6A-like isoform X1 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 110784380 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 110803608 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 110790464 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 110799489 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 110774736 DNA-directed RNA polymerases II, IV and V subunit 9B isoform X1 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110774738 DNA-directed RNA polymerases II, IV and V subunit 9A-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110776620 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 110794527 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 110803410 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 110795392 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 110799009 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 110798000 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110804025 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110792205 cullin-4 K10609 CUL4; cullin 4
F 110799010 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 110786183 WD repeat-containing protein ATCSA-1 isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 110794317 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 110786386 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 110790354 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 110799498 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 110797022 general transcription and DNA repair factor IIH helicase subunit XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 110797073 general transcription and DNA repair factor IIH helicase subunit XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 110805197 general transcription and DNA repair factor IIH helicase subunit XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 110796438 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 110778107 general transcription and DNA repair factor IIH subunit TFB1-1-like K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 110785167 general transcription and DNA repair factor IIH subunit TFB1-3-like isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 110791949 general transcription factor IIH subunit 2 isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 110798364 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 110796840 general transcription and DNA repair factor IIH subunit TFB2 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 110783489 general transcription and DNA repair factor IIH subunit TFB5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 110806160 general transcription and DNA repair factor IIH subunit TFB5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 110797173 cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 110798154 cyclin-H1-1 isoform X5 K06634 CCNH; cyclin H
E 110790669 uncharacterized protein LOC110790669 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 110791143 replication protein A 70 kDa DNA-binding subunit E K07466 RFA1; replication factor A1
E 110793013 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110795633 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 110789030 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 110799857 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 110776059 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 110786211 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 110781770 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 110796681 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 110775314 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 110775861 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 110785247 protein CIA1 K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 110788660 protein AE7-like 1 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 110791484 protein AE7 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 110806212 cullin-3A K03869 CUL3; cullin 3
E 110803616 uncharacterized protein LOC110803616 K03872 ELOC; elongin-C
E 110782350 uncharacterized protein LOC110782350 K03873 ELOB; elongin-B
E 110782700 uncharacterized protein LOC110782700 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 110789489 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 110782495 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 110777148 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 110777243 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 110785518 DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 110788606 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 110775240 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 110801005 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 110793333 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 110803974 DNA polymerase delta small subunit-like K02328 POLD2; DNA polymerase delta subunit 2
E 110786246 uncharacterized protein LOC110786246 K03504 POLD3; DNA polymerase delta subunit 3
E 110783365 uncharacterized protein LOC110783365 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 110791143 replication protein A 70 kDa DNA-binding subunit E K07466 RFA1; replication factor A1
E 110793013 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110795633 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 110789030 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 110799857 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 110776059 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 110788022 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 110780022 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 110794930 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 110797761 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 110804756 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 110792686 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 110798551 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110805675 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110797180 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 110805180 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 110775314 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 110777427 uncharacterized protein LOC110777427 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 110775693 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 110798991 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 110798134 nibrin homolog isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 110787069 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 110791021 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 110789256 uncharacterized protein LOC110789256 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 110786350 uncharacterized protein LOC110786350 K12173 BRE; BRCA1-A complex subunit BRE
E 110798294 uncharacterized protein LOC110798294 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 110795306 uncharacterized protein LOC110795306 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 110777239 BRCT domain-containing protein At4g02110 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 110781998 uncharacterized protein LOC110781998 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 110775693 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 110798991 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 110798134 nibrin homolog isoform X1 K10867 NBN; nibrin
D BRCA complex
E 110804778 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 110796785 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 110796785 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 110793268 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 110803150 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 110775389 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 110802591 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 110776859 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
E 110781069 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
E 110784552 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
E 110786917 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
E 110797411 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
E 110800223 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 110796132 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 110785780 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 110778859 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110781211 SNF2 domain-containing protein CLASSY 4-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110781501 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110781752 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110786470 protein CHROMATIN REMODELING 35-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110792583 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110795146 SNF2 domain-containing protein CLASSY 2-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 110799990 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 110801345 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 110794680 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 110784283 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110797995 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110793976 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 110784283 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110797995 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110792950 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110794365 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110804633 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 110783703 uncharacterized protein LOC110783703 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 110791143 replication protein A 70 kDa DNA-binding subunit E K07466 RFA1; replication factor A1
E 110793013 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110795633 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 110789030 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 110799857 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 110776059 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 110791286 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 110805765 uncharacterized protein LOC110805765 isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 110774742 uncharacterized protein LOC110774742 isoform X2 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 110787929 uncharacterized protein LOC110787929 K19022 AP5B1; AP-5 complex subunit beta-1
E 110785006 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 110776846 uncharacterized protein LOC110776846 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 110803878 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 110782358 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 110794582 uncharacterized protein LOC110794582 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 110775601 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 110785102 non-structural maintenance of chromosomes element 4 homolog A isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 110796606 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 110800894 non-structural maintenance of chromosomes element 4 homolog A-like isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 110786273 crossover junction endonuclease EME1B isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 110777698 crossover junction endonuclease MUS81-like isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 110791979 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 110790138 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 110779233 uncharacterized protein LOC110779233 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 110805553 uncharacterized protein LOC110805553 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 110782493 single-strand DNA endonuclease 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 110799559 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 110796306 uncharacterized protein LOC110796306 K19026 SPG11; spatacsin
E 110801661 uncharacterized protein LOC110801661 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 110791879 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 110782940 uncharacterized protein LOC110782940 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 110805311 uncharacterized protein LOC110805311 isoform X2 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 110783515 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 110794430 uncharacterized protein LOC110794430 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 110775564 uncharacterized protein LOC110775564 K27803 HROB; homologous recombination OB-fold protein
E 110803912 probable DNA helicase MCM8 isoform X1 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 110802504 probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 130472303 probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 110805563 uncharacterized protein LOC110805563 K15047 HNRNPUL1; heterogeneous nuclear ribonucleoprotein U-like protein 1
E 110794210 3'-5' exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 110782724 uncharacterized protein LOC110782724 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 110785584 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 110784475 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 110796134 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 110806053 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 110798109 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 110775693 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 110798991 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 110783295 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 110782328 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 110782885 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 110791642 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 110792541 uncharacterized protein LOC110792541 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 110783057 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
E 110783062 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 110787618 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 110784584 protein MHF1 homolog K11511 APITD1; centromere protein S
E 110794574 protein MHF2 homolog K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 110784283 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110797995 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110792950 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110794365 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110804633 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 110783703 uncharacterized protein LOC110783703 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 110804778 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 110795306 uncharacterized protein LOC110795306 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 110784141 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 110796785 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 110803150 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 110794533 uncharacterized protein LOC110794533 K11137 TELO2; telomere length regulation protein
E 110801074 uncharacterized protein LOC110801074 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 110782132 phytochrome-associated serine/threonine-protein phosphatase 1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 110804805 uncharacterized protein LOC110804805 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 110776583 uncharacterized protein LOC110776583 K23314 WRAP53; telomerase Cajal body protein 1
E 110787579 uncharacterized protein LOC110787579 K24752 WDR70; WD repeat-containing protein 70
E 110777427 uncharacterized protein LOC110777427 K24755 WDR76; WD repeat-containing protein 76
E 110797312 uncharacterized protein LOC110797312 K28434 HMCES; abasic site processing protein HMCES
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 110796288 DNA polymerase eta isoform X2 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 110804934 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 110778619 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 110790690 DNA polymerase zeta catalytic subunit isoform X1 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 110784470 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110790503 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110791616 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110783695 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 110785004 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 110798807 ubiquitin-conjugating enzyme E2 variant 1D isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110805731 ubiquitin-conjugating enzyme E2 variant 1D-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110782658 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 110787034 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 110792686 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 110798551 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 110805675 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 110794670 uncharacterized protein LOC110794670 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 110802593 uncharacterized protein LOC110802593 K10903 HUS1; HUS1 checkpoint protein
D 110790801 uncharacterized protein LOC110790801 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 110804563 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 110780022 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 110794930 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 110797761 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 110804756 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 110790801 uncharacterized protein LOC110790801 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 110779756 uncharacterized protein LOC110779756 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 110784852 uncharacterized protein LOC110784852 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 110794533 uncharacterized protein LOC110794533 K11137 TELO2; telomere length regulation protein
D 110789018 uncharacterized protein LOC110789018 K20403 TTI1; TELO2-interacting protein 1
D 110805674 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 110799250 ubiquitin-like domain-containing protein CIP73 isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 110778292 protein GET4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 110789320 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 110789457 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 110780340 14-3-3 protein 4-like K06630 YWHAE; 14-3-3 protein epsilon
D 110782659 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 110785804 14-3-3-like protein isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 110786877 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110789589 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110790539 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110791861 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110792636 14-3-3-like protein GF14 omicron K06630 YWHAE; 14-3-3 protein epsilon
D 110795294 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 110795440 14-3-3-like protein GF14 omicron K06630 YWHAE; 14-3-3 protein epsilon
D 110796341 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 110800877 14-3-3 protein 1-like K06630 YWHAE; 14-3-3 protein epsilon
D 110802748 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110805272 LOW QUALITY PROTEIN: 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110805645 14-3-3 protein 4-like K06630 YWHAE; 14-3-3 protein epsilon
D 110795463 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 110805764 uncharacterized protein LOC110805764 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 110775266 serine/threonine-protein kinase Nek5 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110783420 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110796512 serine/threonine-protein kinase Nek3-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110801829 serine/threonine-protein kinase Nek6 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110804746 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110783932 uncharacterized protein LOC110783932 K22422 DONSON; protein downstream neighbor of Son
D 110798195 uncharacterized protein LOC110798195 isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 110785346 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 110786261 uncharacterized protein LOC110786261 K25059 SDE2; replication stress response regulator SDE2
D 110788634 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X2 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 110774923 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 110787995 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 110784096 uncharacterized protein LOC110784096 isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 110785424 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 110796410 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 110797933 uncharacterized protein LOC110797933 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 110796531 uncharacterized protein LOC110796531 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 110783931 uncharacterized protein LOC110783931 isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 110799919 uncharacterized protein LOC110799919 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 110777621 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 110799123 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 110799124 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 110790727 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 110788907 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 110787235 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 110797176 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 110805835 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 110791177 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 110801338 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 110792679 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 110794252 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 110783576 ribonucleoside-diphosphate reductase small chain C K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 110784989 ribonucleoside-diphosphate reductase small chain C-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 130469574 LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase small chain A-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 110784401 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 110802953 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 110804801 uncharacterized protein LOC110804801 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 110796595 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 110782864 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 110788587 uncharacterized protein LOC110788587 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110803265 uncharacterized protein LOC110803265 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110805021 uncharacterized protein LOC110805021 isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110784264 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 110788081 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 110789100 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
E 110782370 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 110782370 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 130466287 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 2715632 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 2715633 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 2715634 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 130467840 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F 2715631 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 110777281 uncharacterized protein LOC110777281 isoform X2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 110789480 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 110779539 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 110805423 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 110779539 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 110805423 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 110781855 uncharacterized protein LOC110781855 K04485 radA; DNA repair protein RadA/Sms
E 110788480 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 110798078 DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 110800216 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 110786248 uncharacterized protein LOC110786248 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 110779539 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 110805423 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
D 110789480 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 110791177 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 110801338 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: October 9, 2025