+D GENES KO #

  KEGG Orthology (KO) - Shewanella oncorhynchi

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:sog00010] D RA178_15375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RA178_16745 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RA178_18770 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RA178_17840 fba; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RA178_05380 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RA178_11725 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RA178_11735 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RA178_17845 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RA178_00260 gpmM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RA178_06055 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RA178_11860 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RA178_10085 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RA178_19810 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RA178_19805 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RA178_15815 yiaY; L-threonine dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RA178_01365 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D RA178_13640 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RA178_03115 aldose epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_13830 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D RA178_00770 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D RA178_10690 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RA178_15175 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:sog00020] D RA178_09930 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RA178_19770 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D RA178_10150 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RA178_15595 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D RA178_09955 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D RA178_09960 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_09970 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RA178_09965 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RA178_09945 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RA178_09950 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RA178_09935 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RA178_09940 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RA178_03020 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_19935 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_03015 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_19930 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_03025 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19940 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19945 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_17680 fccA; fumarate reductase flavoprotein subunit FccA K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D RA178_12605 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D RA178_02805 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RA178_18595 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RA178_00770 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D RA178_19810 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RA178_19805 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:sog00030] D RA178_16745 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RA178_11850 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RA178_11845 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D RA178_07805 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RA178_20735 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D RA178_17855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RA178_16740 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D RA178_05040 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D RA178_16730 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D RA178_05655 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D RA178_18390 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D RA178_05665 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_08920 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RA178_18250 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RA178_11840 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D RA178_11835 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RA178_12965 GMC family oxidoreductase K19813 gdh; glucose dehydrogenase [EC:1.1.5.9] D RA178_20625 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D RA178_17840 fba; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RA178_18770 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:sog00040] D RA178_07570 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RA178_14980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RA178_20735 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:sog00051] D RA178_00365 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_15020 mak; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_16440 mak; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_14615 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RA178_18770 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RA178_17840 fba; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RA178_05380 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RA178_19775 hxpB; hexitol phosphatase HxpB K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:sog00052] D RA178_03115 aldose epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RA178_03120 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RA178_14985 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RA178_14980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_15375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RA178_10930 glycoside hydrolase family 97 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RA178_12110 alpha-glucosidase family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:sog00053] D RA178_07570 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RA178_07565 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D RA178_07575 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] C 00500 Starch and sucrose metabolism [PATH:sog00500] D RA178_10930 glycoside hydrolase family 97 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RA178_12110 alpha-glucosidase family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RA178_00350 gtfA; sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7] D RA178_14980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RA178_15750 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RA178_15745 glycogen/starch synthase K00703 glgA; starch synthase [EC:2.4.1.21] D RA178_15770 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RA178_15760 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D RA178_10900 glycoside hydrolase family 15 protein K01178 SGA1; glucoamylase [EC:3.2.1.3] D RA178_15775 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D RA178_10690 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RA178_15765 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_15375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RA178_16745 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RA178_00365 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_15020 mak; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_16440 mak; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:sog00520] D RA178_06510 glycosyl hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D RA178_10800 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RA178_15380 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RA178_16580 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RA178_10690 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RA178_16565 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D RA178_16575 BadF/BadG/BcrA/BcrD ATPase family protein K18676 gspK; glucosamine kinase [EC:2.7.1.8] D RA178_00365 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_15020 mak; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_16440 mak; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RA178_16570 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RA178_21995 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RA178_05375 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D RA178_22015 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RA178_16310 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D RA178_11105 HAD-IA family hydrolase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D RA178_17075 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D RA178_17070 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D RA178_03420 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RA178_00990 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RA178_07525 acyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] D RA178_07110 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D RA178_15175 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D RA178_15375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_14980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RA178_07570 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RA178_03120 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RA178_14985 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RA178_07565 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D RA178_07575 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D RA178_16745 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RA178_14615 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RA178_15750 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:sog00620] D RA178_13640 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RA178_19810 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RA178_19805 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_08585 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RA178_15815 yiaY; L-threonine dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_08570 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RA178_08565 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RA178_11860 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RA178_19420 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RA178_10465 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RA178_01365 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D RA178_17685 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D RA178_15670 FAD-binding and (Fe-S)-binding domain-containing protein K18930 dld; D-lactate dehydrogenase D RA178_12020 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D RA178_08330 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RA178_12465 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RA178_18330 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RA178_02600 malic enzyme-like NAD(P)-binding protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D RA178_16835 oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D RA178_16830 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RA178_16840 OadG family transporter subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D RA178_18595 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RA178_12605 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D RA178_02805 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RA178_03020 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_19935 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_03015 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_19930 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_03025 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19940 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19945 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_17680 fccA; fumarate reductase flavoprotein subunit FccA K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D RA178_20825 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RA178_00770 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D RA178_10085 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RA178_15840 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_02095 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:sog00630] D RA178_15835 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D RA178_13640 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RA178_15840 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D RA178_18595 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RA178_09930 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RA178_19770 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_07150 SDR family oxidoreductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D RA178_01375 catalase K03781 katE; catalase [EC:1.11.1.6] D RA178_14500 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6] D RA178_17490 katB; catalase KatB K03781 katE; catalase [EC:1.11.1.6] D RA178_17055 D-2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D RA178_13895 HAD-IA family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RA178_20730 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RA178_20190 alanine--glyoxylate aminotransferase family protein K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D RA178_01715 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_11810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16490 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_05920 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RA178_18540 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D RA178_18550 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_18545 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D RA178_13835 NAD(P)-dependent oxidoreductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D RA178_14510 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RA178_04780 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D RA178_11835 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RA178_17620 fdhF; formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D RA178_20890 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D RA178_20910 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D RA178_00540 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D RA178_20895 fdh3B; formate dehydrogenase FDH3 subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D RA178_20915 fdh3B; formate dehydrogenase FDH3 subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D RA178_00545 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D RA178_20900 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D RA178_20920 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D RA178_15170 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:sog00640] D RA178_13640 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RA178_07795 propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D RA178_08570 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RA178_08565 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RA178_11755 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RA178_11750 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RA178_11745 dihydrolipoyllysine-residue acetyltransferase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_08585 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D RA178_01385 MDR family oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_19420 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_16535 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D RA178_09965 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RA178_09970 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RA178_14915 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_16540 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_20435 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D RA178_20440 acnD; Fe/S-dependent 2-methylisocitrate dehydratase AcnD K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D RA178_20445 prpF; 2-methylaconitate cis-trans isomerase PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D RA178_19770 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D RA178_20430 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D RA178_01440 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] D RA178_04750 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] C 00650 Butanoate metabolism [PATH:sog00650] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_14345 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RA178_07150 SDR family oxidoreductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D RA178_16830 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RA178_04780 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D RA178_09945 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RA178_09950 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RA178_09935 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RA178_09940 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RA178_03020 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_19935 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_03015 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_19930 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_03025 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19940 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19945 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_17680 fccA; fumarate reductase flavoprotein subunit FccA K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D RA178_12400 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_04745 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_16460 gabD; NADP-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_08585 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D RA178_07765 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D RA178_07760 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RA178_07755 3-oxoacid CoA-transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D RA178_07155 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10580 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_20210 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10575 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RA178_20205 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:sog00660] D RA178_07155 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10580 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_20210 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10575 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RA178_20205 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D RA178_09965 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RA178_09970 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RA178_02105 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RA178_02110 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RA178_02100 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:sog00562] D RA178_10500 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RA178_14915 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_16540 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_05380 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:sog00190] D RA178_16625 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D RA178_09945 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RA178_09950 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RA178_09935 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RA178_09940 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RA178_03020 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_19935 fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D RA178_03015 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_19930 fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D RA178_03025 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19940 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_19945 fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C D RA178_18985 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RA178_18980 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RA178_18975 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D RA178_21335 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21495 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21490 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D RA178_21310 cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D RA178_21300 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D RA178_21295 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D RA178_21305 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D RA178_21330 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RA178_11635 ccoN; cytochrome-c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D RA178_11640 ccoO; cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D RA178_11645 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D RA178_11650 ccoP; cytochrome-c oxidase, cbb3-type subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D RA178_21485 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D RA178_21480 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D RA178_21475 cyoA; ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D RA178_07050 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RA178_17390 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RA178_07055 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RA178_17395 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RA178_07060 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D RA178_22040 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RA178_22030 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RA178_22035 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RA178_22045 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RA178_22025 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RA178_22060 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RA178_22050 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RA178_22055 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RA178_02350 manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D RA178_13255 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:sog00680] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_10785 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D RA178_17620 fdhF; formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D RA178_20890 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D RA178_20910 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D RA178_00540 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D RA178_20895 fdh3B; formate dehydrogenase FDH3 subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D RA178_20915 fdh3B; formate dehydrogenase FDH3 subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D RA178_00545 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D RA178_20900 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D RA178_20920 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D RA178_05920 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RA178_20190 alanine--glyoxylate aminotransferase family protein K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D RA178_17055 D-2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D RA178_06055 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RA178_20825 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RA178_18595 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RA178_17840 fba; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RA178_18770 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RA178_08570 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RA178_08565 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RA178_13640 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RA178_10085 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RA178_00260 gpmM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RA178_04090 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RA178_11120 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RA178_05680 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D RA178_13195 RimK family alpha-L-glutamate ligase K14940 cofF; gamma-F420-2:alpha-L-glutamate ligase [EC:6.3.2.32] C 00910 Nitrogen metabolism [PATH:sog00910] D RA178_04045 napA; nitrate reductase catalytic subunit NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D RA178_12645 napA; nitrate reductase catalytic subunit NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D RA178_04040 napB; nitrate reductase cytochrome c-type subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D RA178_12640 nitrate reductase cytochrome c-type subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D RA178_05080 ammonia-forming cytochrome c nitrite reductase subunit c552 K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D RA178_18720 nrfA; ammonia-forming nitrite reductase cytochrome c552 subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D RA178_16070 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D RA178_19560 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D RA178_10325 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RA178_01715 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_11810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16490 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16260 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RA178_16265 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RA178_10655 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:sog00920] D RA178_16995 cysP; thiosulfate ABC transporter substrate-binding protein CysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D RA178_17000 cysT; sulfate/thiosulfate ABC transporter permease CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D RA178_17005 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D RA178_17010 TOBE-like domain-containing protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D RA178_04505 cysN; sulfate adenylyltransferase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RA178_04500 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RA178_04515 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RA178_00905 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RA178_15025 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RA178_04470 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D RA178_04460 assimilatory sulfite reductase (NADPH) flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D RA178_04465 cysI; assimilatory sulfite reductase (NADPH) hemoprotein subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D RA178_18850 tetrathionate reductase subunit A K08357 ttrA; tetrathionate reductase subunit A D RA178_18840 4Fe-4S dicluster domain-containing protein K08358 ttrB; tetrathionate reductase subunit B D RA178_18845 nrfD; NrfD/PsrC family molybdoenzyme membrane anchor subunit K08359 ttrC; tetrathionate reductase subunit C D RA178_02865 phsA; thiosulfate reductase PhsA K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D RA178_16515 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RA178_21890 glpE; thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D RA178_10510 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RA178_08615 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D RA178_11925 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D RA178_14925 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D RA178_02890 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RA178_11190 acyl-CoA dehydrogenase family protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D RA178_13825 acyl-CoA dehydrogenase C-terminal domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:sog00061] D RA178_19420 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RA178_01890 acyl carrier protein K02078 acpP; acyl carrier protein D RA178_01895 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RA178_13855 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D RA178_13865 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RA178_08700 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RA178_13870 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RA178_01835 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D RA178_08265 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D RA178_01820 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RA178_13850 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RA178_01825 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_13860 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_14890 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_21520 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_09125 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D RA178_15090 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RA178_14345 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D RA178_00410 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_12910 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_17195 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_01945 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:sog00071] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_00100 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_08190 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_11865 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D RA178_12175 fadE; acyl-CoA dehydrogenase FadE K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D RA178_00410 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_12910 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_17195 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_01945 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RA178_15815 yiaY; L-threonine dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:sog00561] D RA178_14510 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RA178_04750 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D RA178_02120 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D RA178_21280 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D RA178_13875 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D RA178_16400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D RA178_19170 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RA178_13180 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:sog00564] D RA178_00275 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D RA178_17640 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D RA178_21280 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D RA178_16400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D RA178_19170 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RA178_13180 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RA178_04490 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D RA178_21950 alpha/beta fold hydrolase K01048 pldB; lysophospholipase [EC:3.1.1.5] D RA178_00480 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RA178_18410 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RA178_19085 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RA178_15120 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D RA178_11210 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RA178_16860 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RA178_19070 asd; archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D RA178_09165 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D RA178_05960 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D RA178_20150 phosphatase PAP2 family protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] C 00565 Ether lipid metabolism [PATH:sog00565] D RA178_04490 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:sog00600] D RA178_15380 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RA178_16580 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism [PATH:sog00590] D RA178_04490 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D RA178_08985 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D RA178_15525 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] C 00591 Linoleic acid metabolism D RA178_04490 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:sog00592] D RA178_04490 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D RA178_00100 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_08190 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:sog01040] D RA178_00940 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D RA178_08515 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D RA178_07850 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:sog00230] D RA178_03830 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D RA178_00900 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D RA178_05665 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_08920 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RA178_18250 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RA178_08305 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RA178_19710 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D RA178_13785 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RA178_17035 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D RA178_07045 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D RA178_13780 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D RA178_16785 purK; 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D RA178_16780 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D RA178_02845 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D RA178_10125 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RA178_19705 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RA178_09045 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RA178_06970 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D RA178_09000 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RA178_06080 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RA178_13790 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D RA178_09265 inosine/guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D RA178_06555 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_00495 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_05670 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_13405 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_01450 pyrimidine/purine nucleoside phosphorylase K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D RA178_16875 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RA178_18110 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D RA178_07025 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RA178_10565 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RA178_17940 yjjX; inosine/xanthosine triphosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D RA178_06795 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D RA178_07030 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RA178_17580 type 1 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RA178_01965 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RA178_11100 nrdA; class 1a ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RA178_11095 nrdB; class Ia ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RA178_14095 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RA178_11830 anti-phage deoxyguanosine triphosphatase K01129 dgt; dGTPase [EC:3.1.5.1] D RA178_11825 yfbR; 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D RA178_01955 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RA178_13260 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RA178_19880 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RA178_06000 relA; GTP diphosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D RA178_16240 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D RA178_20020 class I adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D RA178_04265 cyaB; class IV adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D RA178_03455 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RA178_05790 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RA178_21940 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D RA178_15575 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D RA178_08745 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D RA178_09255 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RA178_06045 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D RA178_03840 cpdA; 3',5'-cyclic-AMP phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D RA178_17105 symmetrical bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D RA178_04515 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RA178_04505 cysN; sulfate adenylyltransferase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RA178_04500 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:sog00240] D RA178_05000 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RA178_04995 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RA178_16345 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RA178_04815 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D RA178_10330 pyrD; quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D RA178_02020 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D RA178_11175 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D RA178_15135 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RA178_10565 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RA178_06045 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D RA178_02715 Maf family protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D RA178_14130 M48 family metallopeptidase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D RA178_06050 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RA178_11150 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RA178_10210 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D RA178_06970 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D RA178_09000 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RA178_06080 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RA178_13790 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D RA178_02005 yjjG; pyrimidine 5'-nucleotidase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D RA178_02545 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D RA178_01450 pyrimidine/purine nucleoside phosphorylase K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D RA178_13775 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D RA178_08745 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D RA178_18385 rihA; pyrimidine-specific ribonucleoside hydrolase RihA K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-] D RA178_15575 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D RA178_13955 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D RA178_06545 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RA178_14095 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RA178_10215 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D RA178_11100 nrdA; class 1a ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RA178_11095 nrdB; class Ia ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RA178_11825 yfbR; 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D RA178_10230 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RA178_02040 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RA178_05660 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D RA178_07720 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D RA178_16210 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:sog00250] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_16180 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D RA178_03040 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D RA178_11075 ansA; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D RA178_12725 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D RA178_13810 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RA178_11820 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RA178_20190 alanine--glyoxylate aminotransferase family protein K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D RA178_11525 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D RA178_03035 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D RA178_20805 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RA178_20800 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RA178_03455 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RA178_05790 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RA178_10125 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RA178_16345 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RA178_12400 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_04745 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_16460 gabD; NADP-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_16260 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RA178_16265 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RA178_10325 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RA178_04295 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D RA178_01715 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_11810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16490 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_05000 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RA178_04995 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RA178_06770 glsB; glutaminase B K01425 glsA; glutaminase [EC:3.5.1.2] D RA178_16570 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RA178_21995 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RA178_08305 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:sog00260] D RA178_06120 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_18750 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_16015 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D RA178_02895 bifunctional aspartate kinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D RA178_08275 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RA178_16010 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D RA178_16005 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RA178_06890 ltaE; low-specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D RA178_05920 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RA178_20190 alanine--glyoxylate aminotransferase family protein K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D RA178_17055 D-2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D RA178_14510 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RA178_00260 gpmM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RA178_04090 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RA178_11120 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RA178_05680 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D RA178_21880 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D RA178_21885 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D RA178_18540 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D RA178_18550 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_18545 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D RA178_11210 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RA178_16860 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RA178_15800 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D RA178_15805 betB; betaine-aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RA178_10795 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RA178_20195 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RA178_08435 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RA178_08440 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:sog00270] D RA178_10510 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RA178_08615 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D RA178_11925 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D RA178_13240 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RA178_04690 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RA178_06030 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RA178_18360 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RA178_17860 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RA178_13565 adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D RA178_04345 polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D RA178_16270 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D RA178_16875 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RA178_00470 mtnC; acireductone synthase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D RA178_11705 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D RA178_12715 PLP-dependent aspartate aminotransferase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D RA178_14285 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D RA178_10280 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D RA178_13140 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RA178_17350 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D RA178_06120 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_18750 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_16015 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D RA178_02895 bifunctional aspartate kinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D RA178_08275 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RA178_14925 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D RA178_02890 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RA178_17380 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D RA178_01615 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RA178_16805 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D RA178_03965 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_16515 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RA178_18595 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RA178_10795 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RA178_16990 cysM; cysteine synthase CysM K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D RA178_04090 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RA178_11120 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:sog00280] D RA178_01615 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RA178_10110 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D RA178_11755 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RA178_11750 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RA178_11745 dihydrolipoyllysine-residue acetyltransferase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_07785 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_00100 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_08190 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_14895 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D RA178_14915 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_16540 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_16535 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_07770 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D RA178_07780 carboxyl transferase domain-containing protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D RA178_07775 enoyl-CoA hydratase-related protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D RA178_07765 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D RA178_07760 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RA178_07755 3-oxoacid CoA-transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:sog00290] D RA178_20195 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RA178_02105 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RA178_02110 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RA178_02100 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D RA178_07155 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10580 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_20210 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10575 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RA178_20205 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D RA178_20215 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RA178_20200 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RA178_01615 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RA178_10110 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D RA178_11820 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RA178_02095 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:sog00300] D RA178_06120 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_18750 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_16015 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D RA178_02895 bifunctional aspartate kinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D RA178_08275 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RA178_09225 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RA178_04990 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RA178_15160 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D RA178_18940 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RA178_10680 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RA178_20000 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RA178_20005 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RA178_02150 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RA178_02155 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:sog00310] D RA178_09960 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_04745 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_16460 gabD; NADP-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:sog00220] D RA178_20810 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D RA178_20805 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RA178_20800 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RA178_06770 glsB; glutaminase B K01425 glsA; glutaminase [EC:3.5.1.2] D RA178_01715 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_11810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16490 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_05000 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RA178_04995 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RA178_10325 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_11820 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RA178_02065 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D RA178_20815 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D RA178_20820 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D RA178_18940 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:sog00330] D RA178_06545 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RA178_13570 speA; biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D RA178_06040 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D RA178_02535 type III PLP-dependent enzyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D RA178_20610 speF; ornithine decarboxylase SpeF K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D RA178_04345 polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D RA178_13565 adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D RA178_09695 GNAT family N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D RA178_06035 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RA178_18935 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D RA178_10045 astB; N-succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D RA178_18930 astD; succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D RA178_11760 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D RA178_10770 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D RA178_16465 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D RA178_16505 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D RA178_16530 aldehyde dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D RA178_06815 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D RA178_04295 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D RA178_04920 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RA178_21650 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RA178_04925 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D RA178_21655 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D RA178_01755 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:sog00340] D RA178_10415 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D RA178_10380 hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D RA178_10390 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D RA178_10395 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D RA178_10385 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D RA178_10400 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D RA178_10405 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RA178_10410 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D RA178_00530 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D RA178_01865 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D RA178_00525 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D RA178_00515 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D RA178_02310 formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] C 00350 Tyrosine metabolism [PATH:sog00350] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_10405 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RA178_11705 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D RA178_08845 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D RA178_08850 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D RA178_14955 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D RA178_14960 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RA178_15815 yiaY; L-threonine dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RA178_04745 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_16460 gabD; NADP-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:sog00360] D RA178_14975 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_10405 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RA178_11705 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D RA178_09065 GNAT family N-acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D RA178_08845 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D RA178_17595 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D RA178_06035 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:sog00380] D RA178_01690 aminotransferase class V-fold PLP-dependent enzyme K01556 KYNU; kynureninase [EC:3.7.1.3] D RA178_09960 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_06035 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RA178_01375 catalase K03781 katE; catalase [EC:1.11.1.6] D RA178_14500 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6] D RA178_17490 katB; catalase KatB K03781 katE; catalase [EC:1.11.1.6] D RA178_17595 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sog00400] D RA178_10075 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RA178_16080 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RA178_18690 aroG; 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RA178_20760 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D RA178_19415 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D RA178_00200 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D RA178_20765 aroK; shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71] D RA178_11145 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RA178_08235 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D RA178_08460 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RA178_08455 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D RA178_08450 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D RA178_08445 trpCF; bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D RA178_08435 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RA178_08440 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RA178_16075 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D RA178_16050 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_10405 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RA178_11705 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D RA178_14975 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:sog00410] D RA178_12400 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_04120 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D RA178_16535 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_14915 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RA178_16540 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:sog00430] D RA178_12400 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RA178_08790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_18620 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_11525 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D RA178_10325 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RA178_08565 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RA178_08570 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:sog00450] D RA178_02890 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RA178_13240 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RA178_04690 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RA178_06030 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RA178_18360 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RA178_12715 PLP-dependent aspartate aminotransferase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D RA178_14285 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D RA178_18040 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D RA178_11520 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RA178_04505 cysN; sulfate adenylyltransferase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RA178_04500 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RA178_00935 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D RA178_00555 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D RA178_10200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:sog00460] D RA178_08790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_18620 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_03040 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D RA178_11075 ansA; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D RA178_12725 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D RA178_05920 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:sog00470] D RA178_03515 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RA178_12090 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RA178_06770 glsB; glutaminase B K01425 glsA; glutaminase [EC:3.5.1.2] D RA178_00955 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RA178_04800 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RA178_02165 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RA178_20000 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RA178_20005 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:sog00480] D RA178_08790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_18620 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_00055 biotin-dependent carboxyltransferase family protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D RA178_16805 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D RA178_03965 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D RA178_06390 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RA178_17260 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RA178_17730 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RA178_04155 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D RA178_10295 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RA178_17545 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RA178_17265 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D RA178_00030 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_01430 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_18305 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_18645 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_21595 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_10615 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_21620 gorA; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D RA178_10150 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RA178_07805 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RA178_11850 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RA178_06835 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D RA178_15520 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D RA178_21430 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D RA178_02535 type III PLP-dependent enzyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D RA178_20610 speF; ornithine decarboxylase SpeF K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D RA178_04345 polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:sog00511] D RA178_15380 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RA178_16580 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis [PATH:sog00540] D RA178_15085 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D RA178_02200 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D RA178_15095 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D RA178_14415 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D RA178_15080 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D RA178_14005 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D RA178_03380 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D RA178_18200 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D RA178_03375 kdsC; 3-deoxy-manno-octulosonate-8-phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D RA178_10640 kdsB; 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase KdsB K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D RA178_21870 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D RA178_04420 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D RA178_12855 lpxM; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D RA178_11280 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D RA178_21865 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D RA178_04425 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D RA178_08710 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:sog00541] D RA178_14980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RA178_14985 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RA178_07570 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RA178_07565 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D RA178_07575 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D RA178_07515 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RA178_07510 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RA178_07615 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RA178_02390 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RA178_15030 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RA178_14615 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RA178_22015 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RA178_07110 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D RA178_07525 acyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201] C 00550 Peptidoglycan biosynthesis [PATH:sog00550] D RA178_03420 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RA178_00990 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RA178_02180 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RA178_02165 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RA178_02150 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RA178_12090 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RA178_02155 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RA178_15125 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RA178_16385 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RA178_02325 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D RA178_02160 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RA178_02175 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RA178_04475 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D RA178_20795 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RA178_18880 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D RA178_05190 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RA178_02145 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RA178_05170 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RA178_11195 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:sog00552] D RA178_16385 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RA178_02325 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:sog00543] D RA178_10510 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:sog00730] D RA178_10960 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D RA178_10965 thiE; thiamine phosphate synthase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D RA178_10970 HesA/MoeB/ThiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D RA178_10520 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RA178_15625 thiI; tRNA uracil 4-sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RA178_10985 thiH; 2-iminoacetate synthase ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D RA178_15650 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RA178_10980 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D RA178_05955 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D RA178_19065 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RA178_03960 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D RA178_09255 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:sog00740] D RA178_14080 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D RA178_05940 ribBA; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D RA178_05930 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D RA178_19985 HAD-IA family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D RA178_00705 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D RA178_05945 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D RA178_05935 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D RA178_11485 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D RA178_16695 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D RA178_19445 fre; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D RA178_03830 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D RA178_10140 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D RA178_18115 flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:sog00750] D RA178_13560 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D RA178_17850 epd; erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D RA178_08270 4-phosphoerythronate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D RA178_11120 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RA178_17090 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D RA178_16130 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D RA178_16005 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:sog00760] D RA178_16180 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D RA178_11740 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D RA178_19830 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D RA178_06555 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_00495 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_05670 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_13405 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RA178_06970 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D RA178_09000 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RA178_06080 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RA178_13790 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D RA178_05205 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D RA178_06045 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D RA178_09270 nadE; ammonia-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D RA178_20835 CinA family nicotinamide mononucleotide deamidase-related protein K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D RA178_08925 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12] D RA178_09990 cobB; NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D RA178_15660 nadK; NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D RA178_04455 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D RA178_04450 pntB; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D RA178_04745 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RA178_16460 gabD; NADP-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:sog00770] D RA178_07155 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10580 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_20210 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RA178_10575 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RA178_20205 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D RA178_20215 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RA178_20200 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RA178_04125 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D RA178_07650 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D RA178_18175 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RA178_04120 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D RA178_01000 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D RA178_02045 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D RA178_06045 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D RA178_21835 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D RA178_19855 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D RA178_16125 acpS; holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D RA178_15265 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D RA178_08040 acyl carrier protein phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D RA178_01615 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RA178_14515 panP; putative pyridoxal-dependent aspartate 1-decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:sog00780] D RA178_13610 methyltransferase domain-containing protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D RA178_01835 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D RA178_08265 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D RA178_01820 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RA178_13850 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RA178_01825 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_13860 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_14890 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_21520 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_15090 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RA178_21370 bioH; pimeloyl-ACP methyl ester esterase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D RA178_13615 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D RA178_13625 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D RA178_13605 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D RA178_13620 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D RA178_00995 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:sog00785] D RA178_05160 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D RA178_05155 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_19810 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RA178_19805 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RA178_09955 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D RA178_09960 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RA178_11755 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RA178_11750 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RA178_11745 dihydrolipoyllysine-residue acetyltransferase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RA178_18540 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D RA178_18550 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RA178_18545 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:sog00790] D RA178_02025 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D RA178_03960 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D RA178_18420 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RA178_16395 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D RA178_04130 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D RA178_16390 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D RA178_05370 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D RA178_17120 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RA178_08290 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D RA178_14080 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D RA178_05940 ribBA; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D RA178_18960 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D RA178_12610 pabB; aminodeoxychorismate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D RA178_10220 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D RA178_08545 folX; dihydroneopterin triphosphate 2'-epimerase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7] D RA178_18585 folM; dihydromonapterin reductase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D RA178_14970 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D RA178_14975 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D RA178_11930 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RA178_11935 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RA178_15245 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D RA178_01505 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RA178_21815 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RA178_01510 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RA178_01520 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RA178_00370 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D RA178_00690 molybdopterin-binding protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RA178_21810 bifunctional molybdopterin-guanine dinucleotide biosynthesis adaptor protein MobB/molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RA178_08345 nucleotidyltransferase family protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D RA178_21805 mobA; molybdenum cofactor guanylyltransferase MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:sog00670] D RA178_17120 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RA178_18585 folM; dihydromonapterin reductase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D RA178_19210 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D RA178_14400 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RA178_05920 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RA178_13785 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RA178_19705 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RA178_00155 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RA178_18550 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RA178_04690 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RA178_16210 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D RA178_15170 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D RA178_02900 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D RA178_18580 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:sog00860] D RA178_07935 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RA178_18235 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D RA178_16350 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RA178_02260 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RA178_12940 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RA178_20025 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RA178_20030 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D RA178_19735 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D RA178_00190 hemF; oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D RA178_21935 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D RA178_00125 hemG; menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D RA178_00135 hemG; menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D RA178_04530 hemG; menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D RA178_06840 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D RA178_09260 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D RA178_20035 uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D RA178_04495 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D RA178_08085 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D RA178_21335 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21495 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21330 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RA178_04730 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D RA178_04725 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D RA178_16275 cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D RA178_04720 cobU; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D RA178_04715 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D RA178_04710 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D RA178_04695 histidine phosphatase family protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D RA178_17205 hutZ; heme utilization protein HutZ K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D RA178_17295 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D RA178_17300 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:sog00130] D RA178_00660 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D RA178_19575 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RA178_19440 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D RA178_18115 flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RA178_18555 FAD-dependent oxidoreductase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D RA178_11110 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D RA178_18560 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D RA178_02305 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D RA178_05265 FAD-dependent monooxygenase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D RA178_21760 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D RA178_21135 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D RA178_21140 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D RA178_21145 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D RA178_21150 menE; o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D RA178_21985 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D RA178_17500 PaaI family thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D RA178_07840 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D RA178_00445 NAD(P)H-dependent oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D RA178_08845 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:sog00900] D RA178_15650 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RA178_15115 ispC; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D RA178_06065 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D RA178_18245 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D RA178_06070 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D RA178_06995 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D RA178_16675 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_18115 flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RA178_15645 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D RA178_17150 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RA178_15125 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:sog00903] D RA178_18945 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:sog00907] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_07765 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D RA178_00100 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_08190 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D RA178_17855 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:sog00523] D RA178_07515 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RA178_07510 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RA178_07615 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RA178_02390 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RA178_15030 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D RA178_21760 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D RA178_07510 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:sog00332] D RA178_04920 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RA178_21650 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RA178_04925 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D RA178_21655 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:sog00261] D RA178_04505 cysN; sulfate adenylyltransferase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RA178_04500 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RA178_06120 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_18750 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D RA178_16015 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D RA178_02895 bifunctional aspartate kinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D RA178_08275 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RA178_09225 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RA178_04990 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:sog00521] D RA178_15375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RA178_11770 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RA178_10500 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RA178_07515 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RA178_07510 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RA178_07615 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RA178_02390 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RA178_15030 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D RA178_15375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:sog00525] D RA178_07515 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RA178_07510 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:sog00401] D RA178_16075 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_10405 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RA178_11705 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D RA178_15360 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D RA178_16605 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] C 00405 Phenazine biosynthesis D RA178_08460 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RA178_08455 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D RA178_13865 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RA178_01825 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_13860 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_14890 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_21520 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D RA178_01890 acyl carrier protein K02078 acpP; acyl carrier protein D RA178_01895 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RA178_13855 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:sog00999] D RA178_17860 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RA178_00200 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:sog00362] D RA178_00100 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_08190 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_00460 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D RA178_03205 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_16830 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:sog00627] D RA178_06035 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RA178_10465 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RA178_18115 flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:sog00364] D RA178_04650 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D RA178_17690 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:sog00625] D RA178_15815 yiaY; L-threonine dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:sog00361] D RA178_04650 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D RA178_17690 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:sog00623] D RA178_04650 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D RA178_17690 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:sog00633] D RA178_04550 nfsB; oxygen-insensitive NAD(P)H nitroreductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34] D RA178_02485 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D RA178_15910 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D RA178_00100 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RA178_08190 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:sog00643] D RA178_08850 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D RA178_14955 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D RA178_14960 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D RA178_06035 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:sog00930] D RA178_20660 DJ-1/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D RA178_18945 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D RA178_00105 fadB; fatty acid oxidation complex subunit alpha FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D RA178_08195 fadJ; fatty acid oxidation complex subunit alpha FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:sog00626] D RA178_15815 yiaY; L-threonine dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D RA178_10780 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RA178_12585 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:sog03020] D RA178_01060 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RA178_01065 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RA178_01220 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RA178_01960 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:sog03010] D RA178_11155 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RA178_15145 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RA178_01125 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RA178_01215 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RA178_01180 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RA178_03485 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RA178_01075 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RA178_01165 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RA178_03445 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RA178_01090 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RA178_01210 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RA178_01070 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RA178_01205 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RA178_01160 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RA178_05425 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RA178_16100 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RA178_01140 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RA178_03495 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RA178_01115 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RA178_16705 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RA178_16410 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RA178_01045 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RA178_01110 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RA178_01095 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RA178_01100 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RA178_01155 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RA178_01170 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RA178_01055 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RA178_03500 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RA178_01050 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RA178_01040 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RA178_03440 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RA178_01145 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RA178_01190 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RA178_01130 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RA178_01225 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RA178_01175 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RA178_16085 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RA178_11515 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RA178_17145 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RA178_01120 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RA178_01105 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RA178_01150 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RA178_12740 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D RA178_17140 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RA178_02055 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RA178_01135 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RA178_01185 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RA178_02595 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RA178_13880 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RA178_02060 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RA178_22120 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RA178_11510 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RA178_01200 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RA178_00215 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_20850 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_00965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_02220 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_21970 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_01290 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_08715 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_16855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_04005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_19765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_00220 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_01295 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_21965 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_16850 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_02235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_00980 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_04010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_08730 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_19760 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_20845 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_02250 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00225 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00985 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_16845 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_02240 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_01300 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_04015 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_08735 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_19755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_20840 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_21960 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:sog00970] D RA178_00975 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_08725 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_02230 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_07950 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_07940 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_06135 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_20105 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_07175 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_14390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06140 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06145 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06155 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06375 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_11955 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11960 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11965 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11970 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11975 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_19750 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_12435 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_00230 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_01305 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_09175 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RA178_11715 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RA178_05290 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RA178_05295 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RA178_05310 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RA178_07960 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07945 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07965 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07970 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07955 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07975 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07980 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_01015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_09170 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_11720 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19055 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_20100 tRNA-His K14226 tRNA-His; tRNA His D RA178_14385 tRNA-His K14226 tRNA-His; tRNA His D RA178_00970 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RA178_02225 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RA178_08720 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RA178_16895 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_05305 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_09180 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_03900 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_05390 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_16900 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_05285 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_09185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_11710 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_13655 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13665 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13670 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13680 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13685 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13695 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13700 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13690 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_16430 tRNA-Ile K14230 tRNA-Met; tRNA Met D RA178_05280 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_05300 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_05395 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09075 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09080 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09085 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09090 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09095 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_06725 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RA178_06735 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RA178_16890 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RA178_14395 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_09285 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_20090 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_20095 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_11600 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_06370 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_09135 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_06160 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_09145 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_09150 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_12570 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_06130 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_01005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_06720 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_01020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_02245 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_06730 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_05070 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RA178_01010 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_11920 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_11910 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_11915 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_07920 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_11470 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07910 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07915 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07905 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07925 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_11475 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07930 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_00565 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D RA178_07935 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RA178_14430 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RA178_06115 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RA178_11025 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RA178_12625 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RA178_00070 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RA178_00065 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RA178_11500 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RA178_18505 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RA178_11555 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RA178_00555 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D RA178_14405 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RA178_10200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RA178_00155 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RA178_06380 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RA178_05220 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RA178_16690 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RA178_17610 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RA178_02580 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RA178_07660 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RA178_07000 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RA178_12870 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RA178_12865 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RA178_16300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RA178_20725 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:sog03060] D RA178_01195 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RA178_01030 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RA178_05385 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RA178_05345 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RA178_08065 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RA178_05350 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RA178_08070 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RA178_08060 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RA178_22105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RA178_02215 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RA178_00270 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D RA178_16105 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RA178_14275 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D RA178_21215 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RA178_02290 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RA178_02285 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D RA178_02280 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D RA178_08530 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RA178_16150 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RA178_16685 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:sog04122] D RA178_10520 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RA178_16515 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RA178_00090 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RA178_13455 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RA178_11570 tusB; sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B D RA178_11575 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D RA178_11580 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D RA178_11565 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D RA178_10135 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RA178_01520 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RA178_01505 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RA178_21815 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RA178_01515 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D RA178_00685 moeB; molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D RA178_01510 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RA178_00370 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D RA178_15625 thiI; tRNA uracil 4-sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RA178_10975 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D RA178_10970 HesA/MoeB/ThiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:sog03018] D RA178_16230 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D RA178_13905 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RA178_19885 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D RA178_06055 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RA178_05435 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RA178_04240 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_06485 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_08000 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_12500 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_15735 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_15895 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_03465 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D RA178_02985 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RA178_02085 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RA178_11250 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RA178_19895 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RA178_04945 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RA178_03175 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RA178_19005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D RA178_13255 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RA178_04135 polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:sog03030] D RA178_08690 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_10725 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_12445 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_15070 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RA178_09050 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RA178_10235 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RA178_05210 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RA178_06385 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RA178_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RA178_03510 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RA178_16420 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RA178_03005 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RA178_12450 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RA178_15075 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RA178_21905 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RA178_08650 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:sog03410] D RA178_12015 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RA178_17155 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RA178_06755 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RA178_21825 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RA178_07990 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RA178_00075 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D RA178_08385 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RA178_21905 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RA178_17755 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RA178_08650 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:sog03420] D RA178_10475 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RA178_02995 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RA178_11945 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D RA178_09160 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D RA178_19580 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RA178_21905 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RA178_08650 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:sog03430] D RA178_06100 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RA178_19015 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D RA178_16235 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D RA178_19580 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RA178_13950 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RA178_07020 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RA178_15640 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RA178_17755 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RA178_03005 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RA178_15070 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RA178_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RA178_09050 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RA178_05210 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RA178_10235 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RA178_08690 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_10725 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_12445 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_06385 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RA178_08650 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RA178_20750 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:sog03440] D RA178_17755 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RA178_03005 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RA178_00020 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D RA178_16135 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RA178_09060 recR; recombination mediator RecR K06187 recR; recombination protein RecR D RA178_06105 recA; recombinase RecA K03553 recA; recombination protein RecA D RA178_21905 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RA178_11040 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RA178_11045 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RA178_11035 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RA178_01915 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RA178_00285 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RA178_12070 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D RA178_12065 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D RA178_12075 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D RA178_15070 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RA178_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RA178_09050 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RA178_05210 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RA178_10235 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RA178_08690 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_10725 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_12445 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_06385 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RA178_02585 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RA178_03490 priB; primosomal replication protein N K02686 priB; primosomal replication protein N D RA178_14255 primosomal replication protein K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:sog03250] D RA178_18150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_15780 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:sog02010] D RA178_16995 cysP; thiosulfate ABC transporter substrate-binding protein CysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D RA178_17000 cysT; sulfate/thiosulfate ABC transporter permease CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D RA178_17005 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D RA178_17010 TOBE-like domain-containing protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D RA178_21790 substrate-binding domain-containing protein K05772 tupA; tungstate transport system substrate-binding protein D RA178_21795 ABC transporter permease K05773 tupB; tungstate transport system permease protein D RA178_21800 energy-coupling factor ABC transporter ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D RA178_01525 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RA178_03325 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RA178_03915 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RA178_01530 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RA178_03910 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RA178_01535 ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RA178_03905 modC; molybdenum ABC transporter ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RA178_03215 ATP-binding cassette domain-containing protein K05776 modF; molybdate transport system ATP-binding protein D RA178_18635 Fe(3+) ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D RA178_18630 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D RA178_18625 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D RA178_16485 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein D RA178_16470 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein D RA178_16475 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein D RA178_16480 potA; polyamine ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D RA178_08825 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RA178_03405 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D RA178_03400 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RA178_03395 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RA178_03410 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein D RA178_03390 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RA178_15530 phosphate ABC transporter substrate-binding protein PstS family protein K02040 pstS; phosphate transport system substrate-binding protein D RA178_14715 ABC transporter permease subunit K02037 pstC; phosphate transport system permease protein D RA178_14710 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D RA178_14705 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RA178_04580 basic amino acid ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D RA178_04575 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D RA178_04570 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D RA178_14320 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein D RA178_14325 ABC transporter permease K19227 sapB; cationic peptide transport system permease protein D RA178_14330 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein D RA178_14335 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein D RA178_14340 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein D RA178_04740 cobalamin-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D RA178_00380 ABC transporter permease K09696 natB; sodium transport system permease protein D RA178_00385 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D RA178_10485 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D RA178_10495 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein D RA178_10490 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D RA178_01240 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D RA178_01245 heme ABC transporter permease K02195 ccmC; heme exporter protein C D RA178_01250 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D RA178_01255 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D RA178_06395 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D RA178_06400 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D RA178_03360 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D RA178_19485 ABC transporter permease subunit K19341 nosY; Cu-processing system permease protein D RA178_19490 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein D RA178_21205 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RA178_21210 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RA178_14010 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D RA178_18680 ABC transporter ATP-binding protein/permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D RA178_07985 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D RA178_20060 type I secretion system permease/ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D RA178_04260 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D RA178_04255 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D RA178_03930 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:sog02060] D RA178_10695 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RA178_10700 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D RA178_10690 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RA178_15175 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D RA178_16225 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D RA178_03335 HPr family phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr D RA178_03345 ptsN; PTS IIA-like nitrogen regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:sog03070] D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_00790 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D D RA178_00785 gspC; type II secretion system protein GspC K02452 gspC; general secretion pathway protein C D RA178_00800 gspF; type II secretion system inner membrane protein GspF K02455 gspF; general secretion pathway protein F D RA178_00805 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G D RA178_00810 gspH; type II secretion system minor pseudopilin GspH K02457 gspH; general secretion pathway protein H D RA178_00815 gspI; type II secretion system minor pseudopilin GspI K02458 gspI; general secretion pathway protein I D RA178_00820 gspJ; type II secretion system minor pseudopilin GspJ K02459 gspJ; general secretion pathway protein J D RA178_00825 gspK; type II secretion system minor pseudopilin GspK K02460 gspK; general secretion pathway protein K D RA178_00835 gspL; type II secretion system protein GspL K02461 gspL; general secretion pathway protein L D RA178_00840 type II secretion system protein M K02462 gspM; general secretion pathway protein M D RA178_00795 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D RA178_05345 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RA178_08065 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RA178_05350 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RA178_08070 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RA178_01030 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RA178_05385 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RA178_01195 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RA178_08060 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RA178_22105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RA178_02215 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RA178_21215 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RA178_00270 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D RA178_16105 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RA178_02290 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RA178_02285 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D RA178_02280 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:sog02020] D RA178_15540 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RA178_15545 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D RA178_03960 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D RA178_18420 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RA178_15530 phosphate ABC transporter substrate-binding protein PstS family protein K02040 pstS; phosphate transport system substrate-binding protein D RA178_10020 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_21450 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_10025 response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_21445 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_21400 envZ; two-component system sensor histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RA178_21395 ompR; two-component system response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D RA178_14235 porin K09476 ompF; outer membrane pore protein F D RA178_01390 ATP-binding protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D RA178_01395 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D RA178_18020 response regulator transcription factor K07661 rstA; two-component system, OmpR family, response regulator RstA D RA178_21250 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D RA178_21255 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein D RA178_12770 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D RA178_12775 response regulator transcription factor K07666 qseB; two-component system, OmpR family, response regulator QseB D RA178_07275 flagellin K02406 fliC; flagellin D RA178_07280 flagellin K02406 fliC; flagellin D RA178_07415 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D RA178_15635 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D RA178_12680 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RA178_00300 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RA178_12675 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RA178_12700 kdpA; potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D RA178_12695 kdpB; potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D RA178_12690 kdpC; potassium-transporting ATPase subunit KdpC K01548 kdpC; potassium-transporting ATPase KdpC subunit D RA178_18760 arcA; two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D RA178_21330 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RA178_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RA178_18015 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D RA178_01680 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D RA178_18330 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RA178_00385 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D RA178_00380 ABC transporter permease K09696 natB; sodium transport system permease protein D RA178_18725 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D RA178_18730 response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D RA178_00535 fdnG; formate dehydrogenase-N subunit alpha K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D RA178_07675 rcsF; Rcs stress response system protein RcsF K06080 rcsF; RcsF protein D RA178_01545 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D RA178_05990 barA; two-component sensor histidine kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D RA178_09155 uvrY; UvrY/SirA/GacA family response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D RA178_06125 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D RA178_12350 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D RA178_21165 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D RA178_12355 response regulator transcription factor K07690 evgA; two-component system, NarL family, response regulator EvgA D RA178_21160 response regulator transcription factor K07690 evgA; two-component system, NarL family, response regulator EvgA D RA178_11220 ampC; class C beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D RA178_01925 sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RA178_01920 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR D RA178_12325 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_21190 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_12320 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_21185 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_15155 glnD; bifunctional uridylyltransferase/uridylyl-removing protein GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D RA178_16630 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D RA178_01420 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D RA178_01415 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D RA178_01715 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_11810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16490 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_06520 short-chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_07880 ATP-binding protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D RA178_07875 sigma-54 dependent transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D RA178_03355 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D RA178_19835 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA D RA178_12810 cybH; Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit D RA178_07215 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RA178_11330 CheR family methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RA178_01455 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_01495 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_02905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_04380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_07065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_08335 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_08365 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_10710 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_11295 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_11325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_12875 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_13630 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_15925 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16435 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16585 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17110 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17275 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17420 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17550 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17625 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18035 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18255 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18470 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18855 PAS domain-containing methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_20925 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_21065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_06490 methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_15960 PAS domain-containing methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_19100 PAS domain-containing methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_07450 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_07455 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_11320 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_07430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_11315 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_07420 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_11310 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_19270 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_07435 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_11340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_05785 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_07210 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08010 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08960 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_07895 TRAP transporter substrate-binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D RA178_07890 TRAP transporter small permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D RA178_07885 TRAP transporter large permease subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D RA178_02475 PhnD/SsuA/transferrin family substrate-binding protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D RA178_18835 PhnD/SsuA/transferrin family substrate-binding protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D RA178_02470 response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR D RA178_18830 response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR D RA178_18850 tetrathionate reductase subunit A K08357 ttrA; tetrathionate reductase subunit A D RA178_18840 4Fe-4S dicluster domain-containing protein K08358 ttrB; tetrathionate reductase subunit B D RA178_18845 nrfD; NrfD/PsrC family molybdoenzyme membrane anchor subunit K08359 ttrC; tetrathionate reductase subunit C D RA178_07305 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D RA178_07310 ATP-binding protein K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D RA178_07315 sigma-54 dependent transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D RA178_18905 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RA178_06770 glsB; glutaminase B K01425 glsA; glutaminase [EC:3.5.1.2] D RA178_02395 HAMP domain-containing sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D RA178_02400 response regulator K15012 regA; two-component system, response regulator RegA D RA178_18985 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RA178_18980 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RA178_18975 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D RA178_11635 ccoN; cytochrome-c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D RA178_11640 ccoO; cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D RA178_11645 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D RA178_11650 ccoP; cytochrome-c oxidase, cbb3-type subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D RA178_07050 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RA178_17390 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RA178_07055 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RA178_17395 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RA178_07060 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_07495 SLBB domain-containing protein K01991 wza; polysaccharide biosynthesis/export protein D RA178_12990 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D RA178_11300 STAS domain-containing protein K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D RA178_07200 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:sog04148] D RA178_02535 type III PLP-dependent enzyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D RA178_20610 speF; ornithine decarboxylase SpeF K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D RA178_18985 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:sog02024] D RA178_17350 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D RA178_19005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D RA178_08460 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RA178_08455 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D RA178_10075 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RA178_16080 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RA178_18690 aroG; 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RA178_12770 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D RA178_12775 response regulator transcription factor K07666 qseB; two-component system, OmpR family, response regulator QseB D RA178_00300 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RA178_12675 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RA178_12400 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RA178_00410 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_12910 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_17195 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_01945 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_18905 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RA178_13940 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D RA178_14080 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D RA178_05930 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D RA178_22105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RA178_05755 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RA178_08095 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RA178_01030 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RA178_05385 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RA178_01195 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RA178_08060 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RA178_02215 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RA178_21215 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RA178_00270 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D RA178_16105 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:sog02030] D RA178_01455 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_01495 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_02905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_04380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_07065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_08335 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_08365 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_10710 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_11295 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_11325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_12875 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_13630 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_15925 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16435 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16585 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17110 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17275 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17420 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17550 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17625 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18035 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18255 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18470 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18855 PAS domain-containing methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_20925 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_21065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_06490 methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_15960 PAS domain-containing methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_19100 PAS domain-containing methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_07430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_11315 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_07450 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_07455 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_11320 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_07420 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_11310 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_19270 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_07425 protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D RA178_03520 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D RA178_07435 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_11340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_05785 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_07210 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08010 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08960 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_11335 cheD; chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D RA178_07215 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RA178_11330 CheR family methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RA178_07330 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D RA178_07365 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D RA178_07370 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D RA178_15635 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D RA178_15630 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:sog02040] D RA178_07320 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D RA178_07325 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF D RA178_07330 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D RA178_07335 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D RA178_07340 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D RA178_07345 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D RA178_07355 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D RA178_00665 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D RA178_07360 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D RA178_07365 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D RA178_07370 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D RA178_07375 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D RA178_07380 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D RA178_07385 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D RA178_07390 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D RA178_07400 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D RA178_07395 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D RA178_07205 flgA; flagellar basal body P-ring formation chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D RA178_07220 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D RA178_07225 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D RA178_07230 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D RA178_07235 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D RA178_07240 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D RA178_07245 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D RA178_07250 flgH; flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D RA178_07255 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D RA178_07260 flgJ; flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D RA178_07265 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D RA178_07270 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D RA178_07190 LPP20 family lipoprotein K09860 flgP; outer membrane protein FlgP D RA178_03460 motX; flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX D RA178_13745 motY; flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY D RA178_07275 flagellin K02406 fliC; flagellin D RA178_07280 flagellin K02406 fliC; flagellin D RA178_07290 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2 D RA178_07300 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D RA178_15635 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D RA178_15630 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D RA178_07200 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D RA178_07195 flagellar protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D RA178_16425 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D RA178_07305 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D RA178_03355 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D RA178_07315 sigma-54 dependent transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D RA178_07415 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D RA178_06055 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D RA178_04690 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:sog01501] D RA178_14235 porin K09476 ompF; outer membrane pore protein F D RA178_18160 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RA178_10800 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RA178_11220 ampC; class C beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D RA178_18015 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D RA178_05880 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09235 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21585 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21670 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09925 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09240 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_21580 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_09825 ATP-binding protein K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D RA178_09820 response regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR D RA178_09815 efflux RND transporter periplasmic adaptor subunit K18145 adeA; membrane fusion protein, multidrug efflux system D RA178_09810 multidrug efflux RND transporter permease subunit K18146 adeB; multidrug efflux pump D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_20795 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RA178_05190 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RA178_02145 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RA178_03990 blaOXA; class D beta-lactamase K22332 blaOXA-548; beta-lactamase class D OXA-548 [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:sog01502] D RA178_12090 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RA178_03515 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RA178_02155 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RA178_02160 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RA178_02175 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:sog01503] D RA178_10020 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_21450 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_10025 response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_21445 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_18015 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D RA178_11280 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D RA178_14320 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein D RA178_14325 ABC transporter permease K19227 sapB; cationic peptide transport system permease protein D RA178_14330 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein D RA178_14335 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein D RA178_14340 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein D RA178_01390 ATP-binding protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D RA178_01395 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D RA178_19020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RA178_08670 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D RA178_20460 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D RA178_18150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_15780 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_05880 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09235 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21585 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21670 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09925 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09240 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_21580 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_15085 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:sog01000] C 01001 Protein kinases [BR:sog01001] D RA178_03310 PA4780 family RIO1-like protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D RA178_03185 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D RA178_05585 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D RA178_15540 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RA178_10020 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_21450 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_21400 envZ; two-component system sensor histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RA178_01390 ATP-binding protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D RA178_12770 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D RA178_12680 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RA178_18015 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D RA178_09825 ATP-binding protein K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D RA178_16975 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RA178_18725 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D RA178_05990 barA; two-component sensor histidine kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D RA178_12350 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D RA178_21165 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D RA178_01925 sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RA178_00315 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D RA178_14050 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D RA178_01420 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D RA178_07880 ATP-binding protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D RA178_21780 cache domain-containing protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D RA178_07430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_11315 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_02475 PhnD/SsuA/transferrin family substrate-binding protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D RA178_18835 PhnD/SsuA/transferrin family substrate-binding protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D RA178_07310 ATP-binding protein K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D RA178_02395 HAMP domain-containing sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D RA178_19130 response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:sog01009] D RA178_09245 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RA178_05680 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:sog01002] D RA178_16685 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D RA178_19850 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RA178_12815 HyaD/HybD family hydrogenase maturation endopeptidase K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D RA178_07030 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RA178_17580 type 1 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RA178_16495 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D RA178_00335 NlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC D RA178_08305 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RA178_16260 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RA178_16570 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RA178_21995 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RA178_13810 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RA178_20660 DJ-1/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D RA178_13215 class GN sortase K07284 srtA; sortase A [EC:3.4.22.70] D RA178_04410 L,D-transpeptidase family protein K19235 ybiS; L,D-transpeptidase YbiS D RA178_12755 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB D RA178_08985 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D RA178_15525 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D RA178_10295 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RA178_17545 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RA178_11875 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D RA178_21605 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D RA178_07710 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D RA178_08750 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D RA178_08765 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D RA178_02405 M4 family metallopeptidase K08604 hap; vibriolysin [EC:3.4.24.25] D RA178_00655 immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-] D RA178_03100 M9 family metallopeptidase K01387 colA; microbial collagenase [EC:3.4.24.3] D RA178_18285 M13-type metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D RA178_19475 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D RA178_19785 M13-type metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D RA178_03045 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D RA178_04395 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D RA178_16810 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D RA178_21010 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D RA178_21005 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D RA178_06390 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RA178_17260 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RA178_17730 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RA178_04155 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D RA178_10680 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RA178_17265 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D RA178_01665 M23 family metallopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D RA178_14140 peptidoglycan DD-metalloendopeptidase family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D RA178_15150 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RA178_00110 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D RA178_06500 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RA178_06425 carboxypeptidase M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D RA178_05365 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RA178_09200 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RA178_13460 M48 family metalloprotease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D RA178_15110 rseP; sigma E protease regulator RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D RA178_19715 ImpA family metalloprotease K21429 impA; immunomodulating metalloprotease D RA178_06905 zinc-dependent peptidase K09933 mtfA; MtfA peptidase D RA178_03425 degS; outer membrane-stress sensor serine endopeptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-] D RA178_05755 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RA178_08095 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RA178_18095 S8 family serine peptidase K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D RA178_11275 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D RA178_13740 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D RA178_18765 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D RA178_00710 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D RA178_05170 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RA178_04610 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D RA178_11195 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D RA178_14375 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RA178_14365 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RA178_21285 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RA178_09490 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RA178_10885 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RA178_08530 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RA178_16150 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RA178_01755 alpha/beta fold hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D RA178_00250 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RA178_10290 prc; carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RA178_15990 S41 family peptidase K08676 tri; tricorn protease [EC:3.4.21.-] D RA178_11080 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-] D RA178_08505 sohB; protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-] D RA178_09195 pepE; dipeptidase PepE K05995 pepE; dipeptidase E [EC:3.4.13.21] D RA178_21895 glpG; rhomboid family intramembrane serine protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D RA178_02450 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D RA178_12725 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D RA178_08790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_18620 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RA178_05765 yegQ; tRNA 5-hydroxyuridine modification protein YegQ K08303 prtC; U32 family peptidase [EC:3.4.-.-] D RA178_18080 U32 family peptidase K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase D RA178_05740 U32 family peptidase K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D RA178_05745 peptidase U32 family protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D RA178_02785 pmbA; metalloprotease PmbA K03592 pmbA; PmbA protein D RA178_02735 tldD; metalloprotease TldD K03568 tldD; TldD protein D RA178_11260 eco; serine protease inhibitor ecotin K08276 eco; ecotin D RA178_18990 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC D RA178_18995 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:sog01003] D RA178_15745 glycogen/starch synthase K00703 glgA; starch synthase [EC:2.4.1.21] D RA178_04475 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D RA178_18880 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D RA178_20795 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RA178_12760 mdoH; glucans biosynthesis glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:sog01005] D RA178_15085 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D RA178_15080 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D RA178_02200 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D RA178_15095 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D RA178_14415 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D RA178_14005 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D RA178_04420 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D RA178_12855 lpxM; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D RA178_21870 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D RA178_11280 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D RA178_21865 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D RA178_10650 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase KdnA K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109] D RA178_10645 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase KdnB K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48] D RA178_18200 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D RA178_10640 kdsB; 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase KdsB K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D RA178_03375 kdsC; 3-deoxy-manno-octulosonate-8-phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D RA178_03380 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D RA178_21860 glycosyltransferase family 9 protein K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D RA178_08710 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D RA178_04425 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:sog01011] D RA178_03420 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RA178_00990 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RA178_02180 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RA178_02165 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RA178_02150 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RA178_12090 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RA178_03515 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RA178_00955 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RA178_04800 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RA178_02160 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RA178_02175 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RA178_16385 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RA178_02325 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D RA178_16700 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RA178_20795 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RA178_18880 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D RA178_05190 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RA178_02145 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RA178_05170 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RA178_11195 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D RA178_04610 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D RA178_04475 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D RA178_04410 L,D-transpeptidase family protein K19235 ybiS; L,D-transpeptidase YbiS D RA178_12755 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB D RA178_14140 peptidoglycan DD-metalloendopeptidase family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D RA178_01665 M23 family metallopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D RA178_13215 class GN sortase K07284 srtA; sortase A [EC:3.4.22.70] D RA178_12040 transglycosylase SLT domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RA178_05180 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D RA178_08975 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D RA178_12470 LysM peptidoglycan-binding domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D RA178_07040 mltF; membrane-bound lytic murein transglycosylase MltF K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D RA178_10225 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D RA178_05175 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RA178_16520 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RA178_19020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RA178_19825 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D RA178_16375 Lpp/OprI family alanine-zipper lipoprotein K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:sog01004] D RA178_13865 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RA178_08700 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RA178_13870 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RA178_01835 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D RA178_08265 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D RA178_01820 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RA178_13850 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RA178_01825 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_13860 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_14890 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_21520 3-oxoacyl-ACP reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RA178_09125 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D RA178_15090 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RA178_14345 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D RA178_08515 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D RA178_07850 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D RA178_00940 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D RA178_13640 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RA178_07795 propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D RA178_00410 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_12910 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_17195 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_01945 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_08885 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D RA178_21280 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D RA178_13875 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D RA178_16400 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D RA178_19170 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:sog01006] D RA178_15645 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D RA178_17150 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RA178_15125 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RA178_19010 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RA178_07840 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D RA178_19575 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RA178_21335 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21495 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:sog01007] D RA178_07935 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RA178_14430 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RA178_04140 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D RA178_16300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RA178_20725 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RA178_14405 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RA178_02580 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RA178_10200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RA178_16690 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RA178_06380 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RA178_05220 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RA178_17610 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RA178_11025 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RA178_12625 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RA178_07000 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RA178_00070 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RA178_00065 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RA178_11555 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RA178_07660 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RA178_11500 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RA178_18505 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RA178_06115 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RA178_12870 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RA178_12865 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RA178_11140 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D RA178_11820 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RA178_11705 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D RA178_10405 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RA178_21880 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D RA178_13615 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D RA178_16535 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D RA178_18940 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RA178_16455 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RA178_13625 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D RA178_16350 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RA178_01615 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RA178_20190 alanine--glyoxylate aminotransferase family protein K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D RA178_11120 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:sog00194] D RA178_22025 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RA178_22030 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RA178_22035 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RA178_22040 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RA178_22045 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RA178_22050 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RA178_22055 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RA178_22060 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RA178_22065 ATP synthase subunit I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:sog03000] D RA178_13140 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RA178_05855 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D RA178_07990 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RA178_14160 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RA178_15615 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RA178_20720 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RA178_20220 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D RA178_18365 LysR substrate-binding domain-containing protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D RA178_16195 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D RA178_16245 oxyR; hydrogen peroxide-inducible genes transcriptional activator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D RA178_09205 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D RA178_10060 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D RA178_04785 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D RA178_05975 lldR; LysR family transcriptional regulator LldR K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D RA178_04375 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D RA178_13185 hdfR; HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D RA178_16615 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RA178_20635 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D RA178_00520 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D RA178_13520 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D RA178_19640 FadR/GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RA178_19815 pdhR; pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RA178_04770 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RA178_15810 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D RA178_02035 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D RA178_01445 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RA178_15460 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RA178_07085 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D RA178_00945 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D RA178_18090 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RA178_11530 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_20160 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_20990 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_21105 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_02910 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D RA178_14105 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RA178_17645 ohrR; hydroperoxide resistance transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RA178_14875 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RA178_00440 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RA178_19700 zntR; Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D RA178_06655 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D RA178_09985 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RA178_15395 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RA178_13940 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D RA178_18905 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RA178_11675 etrA; electron transport transcriptional regulator EtrA K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D RA178_10515 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D RA178_00240 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D RA178_20540 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RA178_00130 metalloregulator ArsR/SmtB family transcription factor K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D RA178_16710 metalloregulator ArsR/SmtB family transcription factor K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D RA178_01790 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D RA178_11855 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D RA178_00995 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RA178_19960 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D RA178_16030 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D RA178_07305 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D RA178_01370 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RA178_17185 sigma 54-interacting transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator D RA178_17475 norR; nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D RA178_14495 sugar diacid recognition domain-containing protein K02647 cdaR; carbohydrate diacid regulator D RA178_03920 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein D RA178_12260 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator D RA178_02885 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D RA178_04295 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D RA178_17360 BolA/IbaG family iron-sulfur metabolism protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D RA178_22070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RA178_07490 rfaH; transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D RA178_18600 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D RA178_14965 tyrR; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D RA178_09220 ACT domain-containing protein K03567 gcvR; glycine cleavage system transcriptional repressor D RA178_14315 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D RA178_14300 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C D RA178_09975 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D RA178_00485 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D RA178_06850 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D RA178_04145 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D RA178_05925 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D RA178_03635 Cro/CI family transcriptional regulator K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D RA178_09605 Cro/CI family transcriptional regulator K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D RA178_02130 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:sog03021] D RA178_01220 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RA178_01060 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RA178_01065 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RA178_01960 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RA178_16425 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D RA178_06095 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D RA178_08155 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RA178_08945 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RA178_16175 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RA178_16765 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RA178_18260 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RA178_21200 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D RA178_03355 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D RA178_07415 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D RA178_19140 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D RA178_05405 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RA178_05950 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D RA178_01035 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RA178_18970 sspA; stringent starvation protein SspA K03599 sspA; stringent starvation protein A D RA178_18965 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B D RA178_16170 RseA family anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA D RA178_16165 MucB/RseB C-terminal domain-containing protein K03598 rseB; sigma-E factor negative regulatory protein RseB D RA178_16160 SoxR reducing system RseC family protein K03803 rseC; sigma-E factor negative regulatory protein RseC D RA178_04145 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D RA178_05335 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RA178_21390 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D RA178_19895 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RA178_01620 Rho-binding antiterminator K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:sog03019] D RA178_13905 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RA178_02720 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D RA178_16145 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RA178_03465 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D RA178_03670 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RA178_19060 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RA178_19885 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D RA178_04240 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_06485 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_08000 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_12500 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_15735 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_15895 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D RA178_02985 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RA178_02085 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RA178_11250 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RA178_06055 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RA178_05435 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RA178_19895 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RA178_04945 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RA178_03175 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RA178_19005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D RA178_13255 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RA178_04135 polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D RA178_16230 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D RA178_06125 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D RA178_02605 csrD; RNase E specificity factor CsrD K18765 csrD; RNase E specificity factor CsrD D RA178_02315 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A D RA178_12485 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A D RA178_19165 rraB; ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B D RA178_03340 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D RA178_12660 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D RA178_18885 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:sog03011] D RA178_11155 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RA178_15145 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RA178_01125 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RA178_01215 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RA178_01180 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RA178_03485 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RA178_01075 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RA178_01165 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RA178_03445 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RA178_01090 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RA178_01210 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RA178_01070 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RA178_01205 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RA178_01160 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RA178_05425 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RA178_16100 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RA178_01140 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RA178_03495 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RA178_01115 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RA178_16705 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RA178_16410 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RA178_01045 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RA178_01110 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RA178_01095 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RA178_01100 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RA178_01155 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RA178_01170 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RA178_03500 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RA178_01050 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RA178_01040 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RA178_01055 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RA178_03440 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RA178_01145 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RA178_01190 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RA178_01130 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RA178_01225 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RA178_01175 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RA178_16085 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RA178_11515 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RA178_17145 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RA178_01120 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RA178_01105 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RA178_01150 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RA178_17140 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RA178_02055 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RA178_01135 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RA178_01185 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RA178_02595 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RA178_13880 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RA178_02060 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RA178_22120 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RA178_11510 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RA178_01200 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RA178_12740 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D RA178_02250 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00225 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00985 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_16845 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_02240 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_01300 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_04015 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_08735 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_19755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_20840 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_21960 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00215 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_20850 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_00965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_02220 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_21970 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_01290 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_08715 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_16855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_04005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_19765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_00220 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_01295 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_21965 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_16850 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_02235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_00980 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_04010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_08730 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_19760 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_20845 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:sog03009] D RA178_16145 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RA178_03310 PA4780 family RIO1-like protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D RA178_03670 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RA178_19060 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RA178_16140 era; GTPase Era K03595 era; GTPase D RA178_17135 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D RA178_04145 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D RA178_05405 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RA178_05950 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D RA178_01035 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RA178_16915 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RA178_17440 23S rRNA pseudouridine(2604) synthase RluF K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RA178_18275 rsuA; 16S rRNA pseudouridine(516) synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RA178_19690 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RA178_17095 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RA178_00150 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RA178_12100 RsmB/NOP family class I SAM-dependent RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RA178_15475 RsmB/NOP family class I SAM-dependent RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RA178_03955 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D RA178_21220 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D RA178_03970 rsmE; 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RA178_10250 rsmF; 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D RA178_22080 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RA178_02135 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RA178_20690 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RA178_21535 class I SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D RA178_13915 rlmA; 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D RA178_16380 SAM-dependent methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D RA178_03470 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RA178_05360 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D RA178_00670 rlmF; 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D RA178_17370 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D RA178_05195 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D RA178_05035 class I SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D RA178_08555 class I SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D RA178_10915 class I SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D RA178_21545 rlmJ; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D RA178_09100 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D RA178_15600 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D RA178_06980 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D RA178_05995 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D RA178_17635 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D RA178_01595 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_02375 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_05005 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_08035 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_17040 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_18085 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_08485 rluB; 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D RA178_13900 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D RA178_16880 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RA178_10145 rluE; 23S rRNA pseudouridine(2457) synthase RluE K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D RA178_05150 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D RA178_10550 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D RA178_19285 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D RA178_16095 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D RA178_02810 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D RA178_18460 OsmC domain/YcaO domain-containing protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D RA178_19950 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D RA178_08230 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D RA178_10120 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D RA178_10730 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D RA178_13905 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RA178_02720 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D RA178_06845 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D RA178_04230 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D RA178_02985 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RA178_17780 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D RA178_19065 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RA178_07015 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D RA178_12955 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A D RA178_19000 hflX; ribosome rescue GTPase HflX K03665 hflX; GTPase D RA178_00185 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RA178_01955 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RA178_05415 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D RA178_05400 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D RA178_14170 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein D RA178_05200 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D RA178_05250 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D RA178_05355 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D RA178_14085 YibL family ribosome-associated protein K14762 yibL; ribosome-associated protein D RA178_02780 yjgA; ribosome biogenesis factor YjgA K09889 yjgA; ribosome-associated protein D RA178_09120 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor D RA178_03350 hpf; ribosome hibernation promoting factor K05808 hpf; ribosome hibernation promoting factor D RA178_15955 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A D RA178_16045 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A D RA178_05275 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D RA178_13885 yceD; 23S rRNA accumulation protein YceD K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:sog03016] D RA178_21265 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D RA178_16370 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D RA178_07935 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RA178_07660 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RA178_16690 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RA178_05220 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RA178_10200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RA178_14430 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RA178_02580 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RA178_17610 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RA178_11025 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RA178_06115 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RA178_12625 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RA178_11500 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RA178_18505 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RA178_11555 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RA178_14405 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RA178_06380 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RA178_07000 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RA178_12870 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RA178_12865 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RA178_16300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RA178_20725 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RA178_01765 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D RA178_13425 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RA178_06760 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D RA178_07670 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D RA178_08285 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RA178_05420 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RA178_06075 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D RA178_10520 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RA178_00185 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RA178_19010 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RA178_22100 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D RA178_22085 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RA178_00935 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D RA178_00905 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RA178_15025 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RA178_22115 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D RA178_20685 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D RA178_13750 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D RA178_02015 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D RA178_12905 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D RA178_18895 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D RA178_05915 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D RA178_00070 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RA178_00065 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RA178_04140 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D RA178_04935 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D RA178_07035 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D RA178_03790 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D RA178_19955 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D RA178_09015 tRNA-dihydrouridine synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D RA178_05260 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D RA178_11015 cmoA; carboxy-S-adenosyl-L-methionine synthase CmoA K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D RA178_11010 cmoB; tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D RA178_19225 methyltransferase domain-containing protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D RA178_00950 trmA; tRNA (uridine(54)-C5)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D RA178_16090 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RA178_10505 trmJ; tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D RA178_10935 tRNA (adenine(22)-N(1))-methyltransferase TrmK K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D RA178_20980 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D RA178_17775 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D RA178_09830 trmY; tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D RA178_15190 truC; tRNA pseudouridine(65) synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D RA178_01595 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_02375 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_05005 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_08035 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_17040 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_18085 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RA178_10135 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RA178_11685 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D RA178_00090 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RA178_13455 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RA178_11570 tusB; sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B D RA178_11575 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D RA178_11580 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D RA178_11565 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D RA178_10530 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D RA178_04085 ygfZ; tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D RA178_14420 tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D RA178_08260 mnmC; FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D RA178_08050 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D RA178_11935 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RA178_11930 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RA178_15245 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D RA178_18355 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D RA178_00930 mnmH; tRNA 2-selenouridine(34) synthase MnmH K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D RA178_08055 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D RA178_15625 thiI; tRNA uracil 4-sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RA178_15065 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D RA178_12935 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D RA178_16405 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D RA178_19025 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D RA178_03875 tcdA; tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D RA178_03465 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D RA178_05435 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:sog03012] D RA178_06855 yciH; stress response translation initiation inhibitor YciH K03113 EIF1; translation initiation factor 1 D RA178_05410 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RA178_11505 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RA178_04200 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D RA178_15140 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D RA178_01025 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RA178_01085 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RA178_01080 fusA; elongation factor G K02355 fusA; elongation factor G D RA178_04025 fusA; elongation factor G K02355 fusA; elongation factor G D RA178_00560 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D RA178_18230 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D RA178_15130 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D RA178_18225 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RA178_05270 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D RA178_10170 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RA178_11805 efp; elongation factor P K02356 efp; elongation factor P D RA178_17615 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D RA178_05630 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D RA178_02800 ribosome alternative rescue factor ArfA K09890 arfA; alternative ribosome-rescue factor D RA178_19410 arfB; alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:sog03110] D RA178_10165 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D RA178_16870 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D RA178_14370 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RA178_02445 hslU; HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D RA178_09245 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RA178_04945 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RA178_10540 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D RA178_13250 yegD; molecular chaperone K04046 yegD; hypothetical chaperone protein D RA178_03175 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RA178_04950 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RA178_17065 djlA; co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein D RA178_10535 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB D RA178_00775 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33 D RA178_15655 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D RA178_10570 Hsp20 family protein K04080 ibpA; molecular chaperone IbpA D RA178_00780 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D RA178_03170 co-chaperone GroES K04078 groES; chaperonin GroES D RA178_05365 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RA178_22060 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RA178_12325 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_21190 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_00270 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D RA178_01400 Spy/CpxP family protein refolding chaperone K06006 cpxP; periplasmic protein CpxP/Spy D RA178_03810 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A D RA178_12850 hypA; hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D RA178_12830 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D RA178_05755 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RA178_08095 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RA178_18095 S8 family serine peptidase K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-] D RA178_15380 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RA178_16580 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RA178_18150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_15780 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_12505 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D RA178_14410 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D RA178_14355 SurA N-terminal domain-containing protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D RA178_17515 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D RA178_19510 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D RA178_04985 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D RA178_16680 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D RA178_08980 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D RA178_16020 slyD; peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D RA178_14180 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D RA178_18875 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D RA178_17085 surA; peptidylprolyl isomerase SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D RA178_19890 trxA; thioredoxin TrxA K03671 TXN; thioredoxin D RA178_19670 trxC; thioredoxin TrxC K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D RA178_09250 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin D RA178_13650 GrxA family glutaredoxin K03674 grxA; glutaredoxin 1 D RA178_13495 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D RA178_08670 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D RA178_20460 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D RA178_13530 dsbB; disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D RA178_17760 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D RA178_03130 protein-disulfide reductase DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D RA178_01275 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:sog04131] D RA178_10565 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RA178_06435 flotillin family protein K07192 FLOT; flotillin D RA178_17470 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D RA178_11725 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RA178_11735 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RA178_11860 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RA178_09245 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:sog03051] D RA178_09245 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:sog03032] D RA178_12450 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RA178_13140 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RA178_13600 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D RA178_14360 hupB; nucleoid-associated protein HU-beta K03530 hupB; DNA-binding protein HU-beta D RA178_19275 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RA178_12860 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D RA178_11160 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D RA178_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RA178_03510 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RA178_16420 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RA178_03005 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RA178_15070 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RA178_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RA178_06385 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RA178_05210 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RA178_10235 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RA178_08690 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_10725 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_12445 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_09050 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RA178_15075 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RA178_21905 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RA178_08650 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RA178_20750 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D RA178_11775 seqA; replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication D RA178_13480 hda; DnaA inactivator Hda K10763 hda; DnaA-homolog protein D RA178_11115 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RA178_00025 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RA178_03860 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RA178_03850 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RA178_10050 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RA178_08320 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:sog03036] D RA178_13140 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RA178_16145 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RA178_06435 flotillin family protein K07192 FLOT; flotillin D RA178_07690 H-NS family nucleoid-associated regulatory protein K03746 hns; DNA-binding protein H-NS D RA178_20365 H-NS family nucleoid-associated regulatory protein K03746 hns; DNA-binding protein H-NS D RA178_13600 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D RA178_14360 hupB; nucleoid-associated protein HU-beta K03530 hupB; DNA-binding protein HU-beta D RA178_19275 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RA178_12860 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D RA178_11160 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D RA178_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RA178_20705 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein D RA178_05140 dpsA; DNA starvation/stationary phase protection protein DpsA K04047 dps; starvation-inducible DNA-binding protein D RA178_19960 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D RA178_19005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D RA178_09205 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D RA178_11530 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_20160 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_20990 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_21105 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RA178_09855 yejK; nucleoid-associated protein YejK K06899 ndpA; nucleoid-associated protein D RA178_08640 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D RA178_08475 ScpA family protein K05896 scpA; segregation and condensation protein A D RA178_08480 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D RA178_02190 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D RA178_06060 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB D RA178_21210 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RA178_02145 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RA178_11535 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RA178_02140 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D RA178_02185 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ D RA178_02170 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D RA178_21205 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RA178_02195 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RA178_08645 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D RA178_18570 cell division protein ZapA K09888 zapA; cell division protein ZapA D RA178_01640 cell division protein ZapB K09892 zapB; cell division protein ZapB D RA178_10335 cell division protein ZapC K18657 zapC; cell division protein ZapC D RA178_19860 zapD; cell division protein ZapD K18778 zapD; cell division protein ZapD D RA178_03435 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE D RA178_04385 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE D RA178_19020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RA178_05880 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09235 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21585 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21670 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09925 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_12890 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D RA178_12895 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RA178_12900 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D RA178_21290 SulA-like leucine-rich domain-containing protein K13053 sulA; cell division inhibitor SulA D RA178_02035 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D RA178_11775 seqA; replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication D RA178_02700 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RA178_02705 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RA178_02710 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D RA178_05185 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D RA178_06925 AAA family ATPase K03496 parA; chromosome partitioning protein D RA178_07445 ParA family protein K03496 parA; chromosome partitioning protein D RA178_14035 AAA family ATPase K03496 parA; chromosome partitioning protein D RA178_19460 AAA family ATPase K03496 parA; chromosome partitioning protein D RA178_22075 ParA family protein K03496 parA; chromosome partitioning protein D RA178_22070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RA178_03860 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RA178_03850 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RA178_22085 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RA178_22080 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RA178_19990 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D RA178_17765 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D RA178_10205 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D RA178_11370 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D RA178_21910 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:sog03400] D RA178_07995 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RA178_06660 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RA178_17155 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RA178_06755 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RA178_12015 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RA178_08915 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RA178_19870 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RA178_19595 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RA178_02040 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RA178_02415 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D RA178_07990 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RA178_00075 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D RA178_21825 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RA178_08385 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RA178_17755 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RA178_08650 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RA178_21905 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RA178_02995 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RA178_11945 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D RA178_09160 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D RA178_19580 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RA178_01060 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RA178_01065 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RA178_01220 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RA178_01960 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RA178_10475 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RA178_06100 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RA178_19015 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D RA178_16235 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D RA178_13950 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RA178_07020 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RA178_15640 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RA178_15070 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RA178_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RA178_06385 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RA178_05210 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RA178_10235 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RA178_08690 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_10725 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_12445 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RA178_09050 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RA178_03005 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RA178_20750 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D RA178_12070 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D RA178_12065 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D RA178_12075 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D RA178_06105 recA; recombinase RecA K03553 recA; recombination protein RecA D RA178_11040 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RA178_11045 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RA178_11035 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RA178_02585 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RA178_03490 priB; primosomal replication protein N K02686 priB; primosomal replication protein N D RA178_14255 primosomal replication protein K04067 priC; primosomal replication protein N'' D RA178_14145 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D RA178_14150 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RA178_05695 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D RA178_00020 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D RA178_01915 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RA178_00285 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RA178_16135 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RA178_09060 recR; recombination mediator RecR K06187 recR; recombination protein RecR D RA178_05965 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RA178_15555 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC D RA178_05605 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1 D RA178_13645 DEAD/DEAH box helicase K19789 radD; DNA repair protein RadD D RA178_19615 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D RA178_11115 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RA178_00025 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RA178_10050 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RA178_13600 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D RA178_14360 hupB; nucleoid-associated protein HU-beta K03530 hupB; DNA-binding protein HU-beta D RA178_19275 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RA178_19960 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D RA178_12860 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D RA178_11160 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D RA178_02085 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RA178_11250 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RA178_07690 H-NS family nucleoid-associated regulatory protein K03746 hns; DNA-binding protein H-NS D RA178_20365 H-NS family nucleoid-associated regulatory protein K03746 hns; DNA-binding protein H-NS D RA178_17290 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RA178_09495 Y-family DNA polymerase K03502 umuC; DNA polymerase V D RA178_10735 umuC; translesion error-prone DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D RA178_09490 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RA178_10885 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RA178_21285 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RA178_14240 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D RA178_06110 regulatory protein RecX K03565 recX; regulatory protein D RA178_20115 rep; DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D RA178_10745 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D RA178_14245 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D RA178_11100 nrdA; class 1a ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RA178_11095 nrdB; class Ia ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:sog03029] D RA178_18980 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RA178_05410 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RA178_11505 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RA178_15140 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D RA178_01025 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RA178_01085 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RA178_01080 fusA; elongation factor G K02355 fusA; elongation factor G D RA178_04025 fusA; elongation factor G K02355 fusA; elongation factor G D RA178_16140 era; GTPase Era K03595 era; GTPase D RA178_16300 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RA178_05220 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RA178_11025 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RA178_02580 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RA178_20400 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D RA178_03005 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RA178_15105 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D RA178_04945 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RA178_15655 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D RA178_03175 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RA178_03170 co-chaperone GroES K04078 groES; chaperonin GroES D RA178_04950 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RA178_10520 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RA178_10535 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB D RA178_13495 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D RA178_10205 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D RA178_21335 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21495 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RA178_21305 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D RA178_21330 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RA178_22105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RA178_21320 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D RA178_21340 SCO family protein K07152 SCO1; protein SCO1 D RA178_09245 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:sog02000] D RA178_14010 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D RA178_18680 ABC transporter ATP-binding protein/permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D RA178_07985 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D RA178_17200 ABC transporter transmembrane domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RA178_05085 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RA178_20060 type I secretion system permease/ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D RA178_04260 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D RA178_04255 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D RA178_03930 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D RA178_09110 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D RA178_16995 cysP; thiosulfate ABC transporter substrate-binding protein CysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D RA178_17000 cysT; sulfate/thiosulfate ABC transporter permease CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D RA178_17005 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D RA178_17010 TOBE-like domain-containing protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D RA178_01525 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RA178_03325 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RA178_03915 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RA178_01530 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RA178_03910 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RA178_01535 ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RA178_03905 modC; molybdenum ABC transporter ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RA178_03215 ATP-binding cassette domain-containing protein K05776 modF; molybdate transport system ATP-binding protein D RA178_21790 substrate-binding domain-containing protein K05772 tupA; tungstate transport system substrate-binding protein D RA178_21795 ABC transporter permease K05773 tupB; tungstate transport system permease protein D RA178_21800 energy-coupling factor ABC transporter ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D RA178_18635 Fe(3+) ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D RA178_18630 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D RA178_18625 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D RA178_16485 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein D RA178_16470 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein D RA178_16475 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein D RA178_16480 potA; polyamine ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D RA178_08825 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RA178_03400 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RA178_03395 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RA178_03390 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RA178_03405 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D RA178_03410 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein D RA178_06915 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RA178_15530 phosphate ABC transporter substrate-binding protein PstS family protein K02040 pstS; phosphate transport system substrate-binding protein D RA178_14715 ABC transporter permease subunit K02037 pstC; phosphate transport system permease protein D RA178_14710 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D RA178_14705 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RA178_04580 basic amino acid ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D RA178_04575 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D RA178_04570 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D RA178_02515 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_04895 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_05010 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_05800 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_05885 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_06460 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_08890 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_15725 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_15995 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_18350 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_18515 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_20155 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_21765 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RA178_14320 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein D RA178_14325 ABC transporter permease K19227 sapB; cationic peptide transport system permease protein D RA178_14330 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein D RA178_14335 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein D RA178_14340 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein D RA178_17235 hemin ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein D RA178_17240 iron ABC transporter permease K25133 hmuU; heme transport system permease protein D RA178_17245 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D RA178_05120 siderophore ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D RA178_05110 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein D RA178_05105 iron chelate uptake ABC transporter family permease subunit K25284 yclN; iron-siderophore transport system permease protein D RA178_05115 ATP-binding cassette domain-containing protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D RA178_04705 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D RA178_04700 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RA178_04740 cobalamin-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D RA178_21755 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RA178_19180 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D RA178_19175 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D RA178_06395 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D RA178_06400 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D RA178_03360 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D RA178_00380 ABC transporter permease K09696 natB; sodium transport system permease protein D RA178_00385 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D RA178_19485 ABC transporter permease subunit K19341 nosY; Cu-processing system permease protein D RA178_19490 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein D RA178_10485 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D RA178_10495 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein D RA178_10490 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D RA178_01240 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D RA178_01245 heme ABC transporter permease K02195 ccmC; heme exporter protein C D RA178_01250 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D RA178_01255 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D RA178_21205 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RA178_21210 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RA178_02750 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RA178_02755 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RA178_13590 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein D RA178_14785 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RA178_18100 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RA178_00400 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RA178_13595 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RA178_14790 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RA178_18105 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RA178_04060 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RA178_04835 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RA178_04840 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RA178_08525 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RA178_04065 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RA178_04830 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RA178_08520 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RA178_19680 DASS family sodium-coupled anion symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D RA178_11480 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D RA178_21350 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RA178_03165 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RA178_09895 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RA178_15710 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RA178_18435 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RA178_12105 sugar MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D RA178_16555 sugar MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D RA178_15370 MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D RA178_00325 MFS transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D RA178_15440 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D RA178_08240 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D RA178_20520 arsJ; organoarsenical effux MFS transporter ArsJ K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D RA178_18160 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RA178_10585 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D RA178_21055 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D RA178_11215 emrD; multidrug efflux MFS transporter EmrD K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD D RA178_03050 MFS transporter K08163 mdtL; MFS transporter, DHA1 family, multidrug resistance protein D RA178_19430 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RA178_19355 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D RA178_07870 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D RA178_13400 tsgA; MFS transporter TsgA K06141 tsgA; MFS transporter, TsgA protein D RA178_10695 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RA178_16225 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D RA178_10700 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D RA178_03335 HPr family phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr D RA178_10690 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RA178_15175 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D RA178_03345 ptsN; PTS IIA-like nitrogen regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D RA178_16315 aqpZ; aquaporin Z K06188 aqpZ; aquaporin Z D RA178_04320 ion transporter K10716 kch; voltage-gated potassium channel D RA178_09890 ion transporter K10716 kch; voltage-gated potassium channel D RA178_02760 ion transporter K08714 VGSC; voltage-gated sodium channel D RA178_18185 ammonium transporter K03320 amt; ammonium transporter, Amt family D RA178_18705 ammonium transporter K03320 amt; ammonium transporter, Amt family D RA178_00030 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_01430 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_18305 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_18645 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_21595 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_10615 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RA178_18970 sspA; stringent starvation protein SspA K03599 sspA; stringent starvation protein A D RA178_08165 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RA178_08170 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RA178_13220 marine proteobacterial sortase target protein K07114 yfbK; Ca-activated chloride channel homolog D RA178_16770 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RA178_11585 Bax inhibitor-1/YccA family protein K19416 yccA; modulator of FtsH protease D RA178_08590 focA; formate transporter FocA K06212 focA; formate transporter D RA178_19370 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D RA178_19080 mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel D RA178_02525 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D RA178_06880 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D RA178_19205 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D RA178_00620 mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D RA178_03330 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D RA178_05020 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D RA178_15515 magnesium transporter K06213 mgtE; magnesium transporter D RA178_15635 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D RA178_15630 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D RA178_03460 motX; flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX D RA178_13745 motY; flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY D RA178_14210 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D RA178_14215 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D RA178_17225 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D RA178_14205 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D RA178_13730 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D RA178_13725 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D RA178_10005 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter D RA178_18740 zinc transporter ZntB K16074 zntB; zinc transporter D RA178_11550 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D RA178_06635 mercuric transporter MerT family protein K08363 merT; mercuric ion transport protein D RA178_06640 heavy-metal-associated domain-containing protein K08364 merP; periplasmic mercuric ion binding protein D RA178_06975 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_13295 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_16115 CNNM domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_20225 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_14235 porin K09476 ompF; outer membrane pore protein F D RA178_01410 porin family protein K16079 omp31; outer membrane immunogenic protein D RA178_16735 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D RA178_02830 porin family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D RA178_06885 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D RA178_02115 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein D RA178_08140 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein D RA178_05650 outer membrane protein OmpK K05517 tsx; nucleoside-specific channel-forming protein D RA178_12320 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_21185 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_17345 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein D RA178_08405 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D RA178_11440 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D RA178_21660 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D RA178_10755 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D RA178_17875 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D RA178_20955 ligand-gated channel protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D RA178_15450 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D RA178_17215 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D RA178_01655 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_02360 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_02790 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_05130 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_08595 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_09005 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_11050 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_13820 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_14230 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_15355 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_16610 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_17180 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_17705 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_18375 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_22010 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_05095 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_12115 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_18310 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_20070 TolC family outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system D RA178_07495 SLBB domain-containing protein K01991 wza; polysaccharide biosynthesis/export protein D RA178_15105 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D RA178_07010 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB D RA178_09230 bamC; outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC D RA178_16885 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D RA178_15870 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE D RA178_12730 autotransporter assembly complex family protein K07278 tamA; translocation and assembly module TamA D RA178_12735 translocation/assembly module TamB domain-containing protein K09800 tamB; translocation and assembly module TamB D RA178_03365 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D RA178_03370 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D RA178_17080 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein D RA178_05215 lptE; LPS assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein D RA178_05245 corC; CNNM family magnesium/cobalt transport protein CorC K06189 corC; hemolysin (HlyC) family protein D RA178_04595 CidA/LrgA family protein K06518 cidA; holin-like protein D RA178_10905 MFS transporter K16211 malY; maltose/moltooligosaccharide transporter D RA178_20615 potE; putrescine-ornithine antiporter K03756 potE; putrescine:ornithine antiporter D RA178_21100 yjeH; L-methionine/branched-chain amino acid transporter K16263 yjeH; amino acid efflux transporter D RA178_01405 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D RA178_19380 efflux RND transporter permease subunit K15726 czcA; heavy metal efflux system protein D RA178_21735 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D RA178_21255 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein D RA178_05825 multidrug efflux RND transporter permease subunit K18299 mexF; multidrug efflux pump D RA178_09240 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_21580 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_09810 multidrug efflux RND transporter permease subunit K18146 adeB; multidrug efflux pump D RA178_07800 sugE; quaternary ammonium compound efflux SMR transporter SugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D RA178_20975 EamA family transporter K15269 pecM; probable blue pigment (indigoidine) exporter D RA178_02075 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD D RA178_20985 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD D RA178_20630 gntU; gluconate transporter K06156 gntU; Gnt-I system low-affinity gluconate transporter D RA178_13765 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter D RA178_14505 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D RA178_03030 anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA D RA178_01680 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D RA178_15665 L-lactate permease K03303 lutP; lactate permease D RA178_19340 lactate permease LctP family transporter K03303 lutP; lactate permease D RA178_14680 BCCT family transporter K02168 betT; choline/glycine/proline betaine transport protein D RA178_04620 calcium:proton antiporter K07300 chaA; Ca2+:H+ antiporter D RA178_01940 calcium/sodium antiporter K07301 yrbG; cation:H+ antiporter D RA178_17570 inorganic phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter D RA178_08145 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D RA178_08680 sodium:solute symporter family protein K14393 actP; cation/acetate symporter D RA178_08015 sstT; serine/threonine transporter SstT K07862 sstT; serine/threonine transporter D RA178_08535 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D RA178_16205 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D RA178_13525 nhaB; sodium/proton antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D RA178_01635 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D RA178_07705 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D RA178_11815 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D RA178_12275 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D RA178_04415 potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter D RA178_16055 sodium:proton antiporter K03316 nhaP; Na+:H+ antiporter D RA178_15850 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D RA178_15055 monovalent cation:proton antiporter-2 (CPA2) family protein K03455 KEA1_2_3; K+:H+ antiporter D RA178_00120 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D RA178_00140 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D RA178_00290 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D RA178_12710 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D RA178_00145 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein D RA178_00295 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D RA178_13490 uracil-xanthine permease family protein K02824 uraA; uracil permease D RA178_04915 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RA178_05705 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RA178_10370 aromatic amino acid transport family protein K03834 tyrP; tyrosine-specific transport protein D RA178_17460 aromatic amino acid transport family protein K03834 tyrP; tyrosine-specific transport protein D RA178_21275 mtr; tryptophan permease K03835 mtr; tryptophan-specific transport protein D RA178_17930 aromatic amino acid transport family protein K03837 sdaC; serine transporter D RA178_06595 amino acid permease K26604 cyuP; cysteine uptake transport protein D RA178_01795 benzoate/H(+) symporter BenE family transporter K05782 benE; benzoate membrane transport protein D RA178_16340 chloride channel protein K03281 clcA; chloride channel protein, CIC family D RA178_17630 chrA; chromate efflux transporter K07240 chrA; chromate transporter D RA178_16775 dauA; C4-dicarboxylic acid transporter DauA K03321 TC.SULP; sulfate permease, SulP family D RA178_20515 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D RA178_07895 TRAP transporter substrate-binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D RA178_07890 TRAP transporter small permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D RA178_07885 TRAP transporter large permease subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D RA178_20545 arsenic transporter K03893 arsB; arsenical pump membrane protein D RA178_16700 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RA178_05970 AEC family transporter K13936 mdcF; malonate transporter and related proteins D RA178_10195 AEC family transporter K13936 mdcF; malonate transporter and related proteins D RA178_09210 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO D RA178_00625 LysE family translocator K05834 rhtB; homoserine/homoserine lactone efflux protein D RA178_08800 LysE family translocator K05834 rhtB; homoserine/homoserine lactone efflux protein D RA178_03270 LysE family transporter K05835 rhtC; threonine efflux protein D RA178_17170 LysE family translocator K05835 rhtC; threonine efflux protein D RA178_14585 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D RA178_14590 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D RA178_12415 FUSC family protein K15547 mdtO; multidrug resistance protein MdtO D RA178_13450 AI-2E family transporter K03548 perM; putative permease D RA178_21770 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter K09125 yhhQ; queuosine precursor transporter D RA178_12580 YchE family NAAT transporter K05595 marC; multiple antibiotic resistance protein D RA178_02170 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D RA178_17470 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D RA178_14200 energy transducer TonB K03832 tonB; periplasmic protein TonB D RA178_17220 energy transducer TonB K03832 tonB; periplasmic protein TonB D RA178_13710 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein D RA178_13720 tolA; cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein D RA178_13715 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D RA178_16830 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RA178_16835 oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D RA178_16840 OadG family transporter subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D RA178_12365 aromatic aminobenezylarsenical efflux permease ArsG family transporter K06196 ccdA; cytochrome c-type biogenesis protein D RA178_21510 protein-disulfide reductase DsbD family protein K08344 scsB; suppressor for copper-sensitivity B D RA178_00535 fdnG; formate dehydrogenase-N subunit alpha K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D RA178_02865 phsA; thiosulfate reductase PhsA K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D RA178_02870 4Fe-4S dicluster domain-containing protein K16293 psrB; polysulfide reductase chain B D RA178_02875 nrfD; NrfD/PsrC family molybdoenzyme membrane anchor subunit K16294 psrC; polysulfide reductase chain C D RA178_18850 tetrathionate reductase subunit A K08357 ttrA; tetrathionate reductase subunit A D RA178_18840 4Fe-4S dicluster domain-containing protein K08358 ttrB; tetrathionate reductase subunit B D RA178_18845 nrfD; NrfD/PsrC family molybdoenzyme membrane anchor subunit K08359 ttrC; tetrathionate reductase subunit C D RA178_19360 HlyD family secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system D RA178_12420 mdtN; multidrug transporter subunit MdtN K15549 mdtN; membrane fusion protein, multidrug efflux system D RA178_19385 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D RA178_21250 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D RA178_20065 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system D RA178_05820 efflux RND transporter periplasmic adaptor subunit K18298 mexE; membrane fusion protein, multidrug efflux system D RA178_05880 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09235 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21585 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21670 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09925 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09815 efflux RND transporter periplasmic adaptor subunit K18145 adeA; membrane fusion protein, multidrug efflux system D RA178_03925 efflux RND transporter periplasmic adaptor subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D RA178_13380 pnuC; nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D RA178_14440 FeoA family protein K04758 feoA; ferrous iron transport protein A D RA178_14435 feoB; Fe(2+) transporter permease subunit FeoB K04759 feoB; ferrous iron transport protein B D RA178_01270 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF D RA178_19525 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF D RA178_16960 MipA/OmpV family protein K07274 mipA; MipA family protein D RA178_18005 MipA/OmpV family protein K07274 mipA; MipA family protein D RA178_18030 MipA/OmpV family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:sog02044] D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_20060 type I secretion system permease/ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D RA178_20065 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system D RA178_20070 TolC family outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system D RA178_16365 AAA family ATPase K02450 gspA; general secretion pathway protein A D RA178_16360 general secretion pathway protein GspB K02451 gspB; general secretion pathway protein B D RA178_00785 gspC; type II secretion system protein GspC K02452 gspC; general secretion pathway protein C D RA178_00790 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D D RA178_00795 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D RA178_00800 gspF; type II secretion system inner membrane protein GspF K02455 gspF; general secretion pathway protein F D RA178_00805 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G D RA178_00810 gspH; type II secretion system minor pseudopilin GspH K02457 gspH; general secretion pathway protein H D RA178_00815 gspI; type II secretion system minor pseudopilin GspI K02458 gspI; general secretion pathway protein I D RA178_00820 gspJ; type II secretion system minor pseudopilin GspJ K02459 gspJ; general secretion pathway protein J D RA178_00825 gspK; type II secretion system minor pseudopilin GspK K02460 gspK; general secretion pathway protein K D RA178_00835 gspL; type II secretion system protein GspL K02461 gspL; general secretion pathway protein L D RA178_00840 type II secretion system protein M K02462 gspM; general secretion pathway protein M D RA178_00845 type II secretion system protein N K02463 gspN; general secretion pathway protein N D RA178_19850 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RA178_19835 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA D RA178_19840 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D RA178_19845 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D RA178_16650 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE D RA178_06985 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D RA178_20790 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D RA178_20785 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN D RA178_20780 type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO D RA178_20775 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D RA178_20770 type IV pilus secretin PilQ family protein K02666 pilQ; type IV pilus assembly protein PilQ D RA178_06825 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT D RA178_06830 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU D RA178_16670 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D RA178_16665 PilW family protein K02672 pilW; type IV pilus assembly protein PilW D RA178_16660 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX D RA178_16655 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1 D RA178_10240 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ D RA178_16635 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT D RA178_16640 GspH/FimT family pseudopilin K08085 fimU; type IV fimbrial biogenesis protein FimU D RA178_08280 FimV/HubP family polar landmark protein K08086 fimV; pilus assembly protein FimV D RA178_02665 type II secretion system protein K10924 mshA; MSHA pilin protein MshA D RA178_02670 prepilin-type N-terminal cleavage/methylation domain-containing protein K10924 mshA; MSHA pilin protein MshA D RA178_04250 prepilin-type N-terminal cleavage/methylation domain-containing protein K10924 mshA; MSHA pilin protein MshA D RA178_05235 prepilin-type N-terminal cleavage/methylation domain-containing protein K10924 mshA; MSHA pilin protein MshA D RA178_02660 type II secretion system protein K10925 mshB; MSHA pilin protein MshB D RA178_17160 prepilin-type N-terminal cleavage/methylation domain-containing protein K10925 mshB; MSHA pilin protein MshB D RA178_02675 type II secretion system protein K10926 mshC; MSHA pilin protein MshC D RA178_02680 type II secretion system protein K10927 mshD; MSHA pilin protein MshD D RA178_02645 ATPase, T2SS/T4P/T4SS family K12276 mshE; MSHA biogenesis protein MshE D RA178_02650 type II secretion system F family protein K12278 mshG; MSHA biogenesis protein MshG D RA178_02610 MSHA biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI D RA178_02620 MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ D RA178_02625 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK D RA178_02630 mshL; pilus (MSHA type) biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL D RA178_02635 AAA family ATPase K12283 mshM; MSHA biogenesis protein MshM D RA178_02640 tetratricopeptide repeat protein K12284 mshN; MSHA biogenesis protein MshN D RA178_02685 type II secretion system protein K12285 mshO; MSHA biogenesis protein MshO D RA178_02690 MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP D RA178_02695 MSHA biogenesis protein MshQ K12287 mshQ; MSHA biogenesis protein MshQ D RA178_06810 YggT family protein K02221 yggT; YggT family protein D RA178_14280 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA D RA178_14015 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D RA178_07400 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D RA178_07395 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D RA178_07465 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K04061 flhB2; flagellar biosynthesis protein D RA178_07325 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF D RA178_07335 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D RA178_07340 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D RA178_07370 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D RA178_07375 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D RA178_07380 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D RA178_07385 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D RA178_07390 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D RA178_17760 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D RA178_12345 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D RA178_21195 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D RA178_12325 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_21190 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_12320 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_21185 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_01565 hypothetical protein K21965 ecpB; Mat/Ecp fimbriae periplasmic chaperone D RA178_04110 curlin K04335 csgB; minor curlin subunit D RA178_04855 curli production assembly/transport protein CsgE K04337 csgE; curli production assembly/transport component CsgE D RA178_04860 curli assembly protein CsgF K04338 csgF; curli production assembly/transport component CsgF D RA178_04865 CsgG/HfaB family protein K06214 csgG; curli production assembly/transport component CsgG D RA178_02215 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RA178_00270 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D RA178_05345 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RA178_08065 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RA178_01030 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RA178_05350 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RA178_08070 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RA178_05385 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RA178_01195 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RA178_16105 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RA178_21215 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RA178_08060 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RA178_22105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RA178_02290 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RA178_02285 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D RA178_02280 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:sog02042] D RA178_08600 TDT family transporter K11041 eta; exfoliative toxin A/B D RA178_06975 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_13295 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_16115 CNNM domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_20225 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RA178_10950 hemolysin III family protein K11068 hlyIII; hemolysin III D RA178_03100 M9 family metallopeptidase K01387 colA; microbial collagenase [EC:3.4.24.3] C 02022 Two-component system [BR:sog02022] D RA178_15540 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RA178_15545 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D RA178_10020 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_21450 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_10025 response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_21445 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_21400 envZ; two-component system sensor histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RA178_21395 ompR; two-component system response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D RA178_18020 response regulator transcription factor K07661 rstA; two-component system, OmpR family, response regulator RstA D RA178_01390 ATP-binding protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D RA178_01395 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D RA178_12770 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D RA178_12775 response regulator transcription factor K07666 qseB; two-component system, OmpR family, response regulator QseB D RA178_12680 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RA178_00300 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RA178_12675 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RA178_18760 arcA; two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D RA178_18015 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D RA178_09825 ATP-binding protein K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D RA178_09820 response regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR D RA178_16975 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RA178_01585 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RA178_11055 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RA178_13230 pdsR; proteobacterial dedicated sortase system response regulator K02483 K02483; two-component system, OmpR family, response regulator D RA178_16970 response regulator K02483 K02483; two-component system, OmpR family, response regulator D RA178_01330 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RA178_18915 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RA178_18725 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D RA178_18730 response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D RA178_01545 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D RA178_05990 barA; two-component sensor histidine kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D RA178_09155 uvrY; UvrY/SirA/GacA family response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D RA178_12350 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D RA178_21165 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D RA178_12355 response regulator transcription factor K07690 evgA; two-component system, NarL family, response regulator EvgA D RA178_21160 response regulator transcription factor K07690 evgA; two-component system, NarL family, response regulator EvgA D RA178_01925 sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RA178_01920 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR D RA178_00315 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D RA178_14050 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D RA178_00320 LytTR family DNA-binding domain-containing protein K02477 K02477; two-component system, LytTR family, response regulator D RA178_14055 btsR; two-component system response regulator BtsR K02477 K02477; two-component system, LytTR family, response regulator D RA178_01420 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D RA178_01415 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D RA178_07880 ATP-binding protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D RA178_07875 sigma-54 dependent transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D RA178_21780 cache domain-containing protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D RA178_07430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_11315 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_07420 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_11310 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_19270 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_07435 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_11340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_05785 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_07210 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08010 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08960 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_02475 PhnD/SsuA/transferrin family substrate-binding protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D RA178_18835 PhnD/SsuA/transferrin family substrate-binding protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D RA178_02470 response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR D RA178_18830 response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR D RA178_07310 ATP-binding protein K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D RA178_07315 sigma-54 dependent transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D RA178_02395 HAMP domain-containing sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D RA178_02400 response regulator K15012 regA; two-component system, response regulator RegA D RA178_19130 response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:sog02035] D RA178_07430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_11315 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RA178_07450 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_07455 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_11320 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RA178_03520 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D RA178_11335 cheD; chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D RA178_07215 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RA178_11330 CheR family methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RA178_07435 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_11340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RA178_07420 cheY; chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_11310 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_19270 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RA178_07425 protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D RA178_05785 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_07210 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08010 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_08960 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D RA178_01455 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_01495 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_02905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_04380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_07065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_08335 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_08365 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_10710 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_11295 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_11325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_12875 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_13630 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_15925 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16435 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16585 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_16905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17110 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17275 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17420 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17550 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_17625 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18035 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18255 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18470 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_18855 PAS domain-containing methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_20925 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_21065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RA178_06490 methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_15960 PAS domain-containing methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_19100 PAS domain-containing methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D RA178_07335 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D RA178_07340 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D RA178_07345 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D RA178_07375 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D RA178_07380 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D RA178_07385 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D RA178_07390 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D RA178_07400 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D RA178_07395 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D RA178_07330 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D RA178_07365 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D RA178_07370 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D RA178_07325 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF D RA178_07255 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D RA178_07205 flgA; flagellar basal body P-ring formation chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D RA178_07250 flgH; flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D RA178_00665 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D RA178_07360 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D RA178_07320 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D RA178_07355 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D RA178_07220 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D RA178_07225 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D RA178_07230 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D RA178_07240 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D RA178_07245 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D RA178_07260 flgJ; flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D RA178_07235 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D RA178_07265 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D RA178_07270 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D RA178_07195 flagellar protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D RA178_07190 LPP20 family lipoprotein K09860 flgP; outer membrane protein FlgP D RA178_03460 motX; flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX D RA178_13745 motY; flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY D RA178_07275 flagellin K02406 fliC; flagellin D RA178_07280 flagellin K02406 fliC; flagellin D RA178_07290 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2 D RA178_07300 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D RA178_07415 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D RA178_15635 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D RA178_15630 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D RA178_07305 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D RA178_07310 ATP-binding protein K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D RA178_07315 sigma-54 dependent transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D RA178_07200 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D RA178_07285 flagellar protein FlaG K06603 flaG; flagellar protein FlaG D RA178_07405 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D RA178_07410 MinD/ParA family protein K04562 flhG; flagellar biosynthesis protein FlhG D RA178_06825 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT D RA178_06830 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU D RA178_19835 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA D RA178_19840 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D RA178_19845 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D RA178_19850 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RA178_06985 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D RA178_20770 type IV pilus secretin PilQ family protein K02666 pilQ; type IV pilus assembly protein PilQ D RA178_20775 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D RA178_20780 type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO D RA178_20785 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN D RA178_20790 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D RA178_10240 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ D RA178_16670 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D RA178_16665 PilW family protein K02672 pilW; type IV pilus assembly protein PilW D RA178_16660 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX D RA178_16655 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1 D RA178_16650 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE D RA178_12345 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D RA178_21195 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D RA178_12325 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_21190 molecular chaperone K07346 fimC; fimbrial chaperone protein D RA178_12320 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein D RA178_21185 fimbria/pilus outer membrane usher protein K07347 fimD; outer membrane usher protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:sog04812] D RA178_02700 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RA178_02195 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RA178_02190 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D RA178_12890 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D RA178_12895 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RA178_12900 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D RA178_06925 AAA family ATPase K03496 parA; chromosome partitioning protein D RA178_07445 ParA family protein K03496 parA; chromosome partitioning protein D RA178_14035 AAA family ATPase K03496 parA; chromosome partitioning protein D RA178_19460 AAA family ATPase K03496 parA; chromosome partitioning protein D RA178_22075 ParA family protein K03496 parA; chromosome partitioning protein D RA178_22070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:sog04147] D RA178_09245 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RA178_06055 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RA178_11725 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RA178_11735 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RA178_17845 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RA178_11860 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RA178_18150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_15780 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RA178_13760 peroxiredoxin C K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D RA178_06435 flotillin family protein K07192 FLOT; flotillin D RA178_03175 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RA178_04945 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RA178_16745 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RA178_18765 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D RA178_07025 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RA178_01025 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RA178_01085 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RA178_13425 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RA178_00410 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_12910 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_17195 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_01945 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RA178_14920 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RA178_11875 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] D RA178_09255 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RA178_09045 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RA178_20800 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RA178_20805 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RA178_18770 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D RA178_03120 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RA178_15770 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RA178_02120 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D RA178_01715 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_11810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_16490 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RA178_02260 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RA178_12940 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RA178_08845 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D RA178_14970 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D RA178_03960 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D RA178_04090 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RA178_19705 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RA178_19800 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RA178_07700 FAD-binding protein K03522 fixB; electron transfer flavoprotein alpha subunit D RA178_11850 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RA178_05380 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RA178_14860 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:sog02048] D RA178_05605 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1 D RA178_05610 CRISPR-associated endonuclease Cas3'' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D RA178_05625 cas6f; type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D RA178_09435 hypothetical protein K19144 csx3; CRISPR-associated protein Csx3 D RA178_20750 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D RA178_13140 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RA178_03185 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D RA178_05585 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D RA178_14300 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C D RA178_14305 pspB; envelope stress response membrane protein PspB K03970 pspB; phage shock protein B D RA178_02195 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RA178_02700 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RA178_03860 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RA178_03850 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RA178_07935 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RA178_16185 hypothetical protein K19168 cptA; toxin CptA D RA178_16190 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB D RA178_10520 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides [BR:sog04052] D RA178_08925 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12] C 04515 Cell adhesion molecules C 04090 CD molecules [BR:sog04090] D RA178_18765 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D RA178_11875 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1] C 01504 Antimicrobial resistance genes [BR:sog01504] D RA178_03990 blaOXA; class D beta-lactamase K22332 blaOXA-548; beta-lactamase class D OXA-548 [EC:3.5.2.6] D RA178_01635 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D RA178_07705 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D RA178_11815 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D RA178_14575 Vat family streptogramin A O-acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D RA178_21530 CatB-related O-acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D RA178_02860 pentapeptide repeat-containing protein K18555 qnr; fluoroquinolone resistance protein D RA178_18015 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] D RA178_10020 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_21450 ATP-binding protein K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D RA178_10025 response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_21445 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D RA178_05880 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09235 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21585 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_21670 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09925 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D RA178_09240 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_21580 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D RA178_05820 efflux RND transporter periplasmic adaptor subunit K18298 mexE; membrane fusion protein, multidrug efflux system D RA178_05825 multidrug efflux RND transporter permease subunit K18299 mexF; multidrug efflux pump D RA178_07085 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D RA178_14875 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RA178_00440 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RA178_09825 ATP-binding protein K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D RA178_09820 response regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR D RA178_09815 efflux RND transporter periplasmic adaptor subunit K18145 adeA; membrane fusion protein, multidrug efflux system D RA178_09810 multidrug efflux RND transporter permease subunit K18146 adeB; multidrug efflux pump D RA178_03825 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein D RA178_12355 response regulator transcription factor K07690 evgA; two-component system, NarL family, response regulator EvgA D RA178_21160 response regulator transcription factor K07690 evgA; two-component system, NarL family, response regulator EvgA D RA178_14235 porin K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:sog00537] D RA178_03960 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins [BR:sog03200] C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:sog03100] D RA178_00975 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_08725 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_02230 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_07950 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_07940 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RA178_06135 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_20105 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_07175 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_14390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06140 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06145 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06155 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_06375 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RA178_11955 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11960 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11965 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11970 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_11975 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RA178_19750 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_12435 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_00230 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_01305 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RA178_09175 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RA178_11715 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RA178_05290 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RA178_05295 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RA178_05310 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RA178_07960 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07945 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07965 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07970 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07955 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07975 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_07980 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RA178_01015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_09170 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_11720 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_19055 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RA178_20100 tRNA-His K14226 tRNA-His; tRNA His D RA178_14385 tRNA-His K14226 tRNA-His; tRNA His D RA178_00970 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RA178_02225 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RA178_08720 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RA178_16895 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_05305 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_09180 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_03900 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_05390 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_16900 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_05285 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_09185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_11710 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RA178_13655 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13665 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13670 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13680 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13685 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13695 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13700 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_13690 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RA178_16430 tRNA-Ile K14230 tRNA-Met; tRNA Met D RA178_05280 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_05300 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_05395 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09075 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09080 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09085 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09090 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_09095 tRNA-Met K14230 tRNA-Met; tRNA Met D RA178_06725 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RA178_06735 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RA178_16890 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RA178_14395 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_09285 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_20090 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_20095 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RA178_11600 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_06370 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_09135 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_06160 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_09145 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_09150 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_12570 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_06130 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RA178_01005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_06720 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_01020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_02245 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_06730 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RA178_05070 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RA178_01010 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_11920 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_11910 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_11915 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RA178_07920 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_11470 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07910 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07915 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07905 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07925 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_11475 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_07930 tRNA-Val K14237 tRNA-Val; tRNA Val D RA178_00565 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D RA178_00215 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_20850 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_00965 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_02220 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_21970 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_01290 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_08715 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_16855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_04005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_19765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RA178_00220 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_01295 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_21965 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_16850 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_02235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_00980 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_04010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_08730 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_19760 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_20845 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RA178_02250 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00225 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_00985 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_16845 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_02240 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_01300 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_04015 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_08735 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_19755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_20840 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_21960 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RA178_14275 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D RA178_20685 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D RA178_15890 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RA178_14645 oleD; 2-alkyl-3-oxoalkanoate reductase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D RA178_07730 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D RA178_04875 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D RA178_20525 ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D RA178_11085 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D RA178_08350 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D RA178_08355 molybdopterin-dependent oxidoreductase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D RA178_01500 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D RA178_03105 NAD(P)H-quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D RA178_16930 NAD(P)H-dependent oxidoreductase K03206 azr; azobenzene reductase [EC:1.7.1.6] D RA178_01775 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D RA178_17740 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D RA178_02930 c-type cytochrome K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D RA178_11765 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D RA178_12945 bifunctional methionine sulfoxide reductase B/A protein K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D RA178_15470 glutathione binding-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D RA178_12030 msrP; protein-methionine-sulfoxide reductase catalytic subunit MsrP K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D RA178_09860 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D RA178_09215 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RA178_06875 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RA178_17735 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D RA178_06015 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D RA178_17650 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D RA178_18615 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D RA178_12805 hyaB; nickel-dependent hydrogenase large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1] D RA178_12800 hyaA; nickel-dependent hydrogenase small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1] D RA178_00310 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RA178_04225 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RA178_06955 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RA178_16910 hmpA; NO-inducible flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D RA178_08420 lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252] D RA178_00695 ftnA; non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D RA178_18650 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D RA178_17485 norW; NADH:flavorubredoxin reductase NorW K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-] D RA178_13465 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D RA178_20550 arsC; glutaredoxin-dependent arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D RA178_14090 nrdG; anaerobic ribonucleoside-triphosphate reductase-activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D RA178_08580 pflA; pyruvate formate lyase 1-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RA178_11130 YjjW family glycine radical enzyme activase K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RA178_16065 hybrid-cluster NAD(P)-dependent oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D RA178_06085 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D RA178_06685 cyclopropane-fatty-acyl-phospholipid synthase family protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D RA178_20940 coproporphyrinogen III oxidase family protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350] D RA178_05230 methyltransferase domain-containing protein K22843 ETFBKMT; ETFB lysine methyltransferase [EC:2.1.1.-] D RA178_08835 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D RA178_18280 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D RA178_08625 beta-ketoacyl-ACP synthase III K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207] D RA178_05240 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D RA178_08760 acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D RA178_17945 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D RA178_01800 GNAT family N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D RA178_06945 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D RA178_06950 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D RA178_10180 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D RA178_12060 DUF3488 and transglutaminase-like domain-containing protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D RA178_10175 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D RA178_14660 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D RA178_10945 tRNA-uridine aminocarboxypropyltransferase K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D RA178_11225 tRNA-uridine aminocarboxypropyltransferase K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D RA178_21050 tRNA-uridine aminocarboxypropyltransferase K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D RA178_16215 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RA178_18445 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RA178_12705 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RA178_12780 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RA178_17310 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RA178_17430 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RA178_10080 pyruvate, water dikinase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D RA178_04360 glnE; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D RA178_13290 ltrA; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D RA178_20475 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D RA178_19120 protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1] D RA178_00420 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RA178_00435 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RA178_01860 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RA178_05780 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RA178_13735 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RA178_08465 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D RA178_08220 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D RA178_18190 EAL domain-containing protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D RA178_04080 two-component system response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D RA178_21750 HD-GYP domain-containing protein K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D RA178_08105 alkyl sulfatase dimerization domain-containing protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D RA178_15255 alkyl sulfatase dimerization domain-containing protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D RA178_03975 endA; endonuclease EndA K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D RA178_02270 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RA178_05640 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RA178_10245 YchF/TatD family DNA exonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RA178_11780 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-] D RA178_03680 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D RA178_12120 glycoside hydrolase family 13 protein K21575 susA; neopullulanase [EC:3.2.1.135] D RA178_00160 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RA178_12155 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RA178_17530 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RA178_17935 acylase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D RA178_15350 polysaccharide deacetylase family protein K18454 deaA; chitin disaccharide deacetylase [EC:3.5.1.105] D RA178_09905 yqfB; N(4)-acetylcytidine aminohydrolase K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D RA178_06590 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D RA178_04315 CYTH domain-containing protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D RA178_13890 nucleoside triphosphate pyrophosphatase K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D RA178_08185 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RA178_12050 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RA178_14655 alpha/beta fold hydrolase K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D RA178_19030 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D RA178_06515 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D RA178_19665 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D RA178_14650 fatty acid CoA ligase family protein K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D RA178_18120 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D RA178_13175 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1] D RA178_12000 rsxD; electron transport complex subunit RsxD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D RA178_11995 rsxC; electron transport complex subunit RsxC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D RA178_11990 rsxB; electron transport complex subunit RsxB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D RA178_17340 Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D RA178_17995 Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D RA178_17335 NADH:ubiquinone reductase (Na(+)-transporting) subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D RA178_17990 NADH:ubiquinone reductase (Na(+)-transporting) subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D RA178_17330 Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D RA178_17985 Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D RA178_17325 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D RA178_17980 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D RA178_17320 nqrE; NADH:ubiquinone reductase (Na(+)-transporting) subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D RA178_17975 nqrE; NADH:ubiquinone reductase (Na(+)-transporting) subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D RA178_17315 nqrF; NADH:ubiquinone reductase (Na(+)-transporting) subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D RA178_17970 nqrF; NADH:ubiquinone reductase (Na(+)-transporting) subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D RA178_11660 heavy metal translocating P-type ATPase metal-binding domain-containing protein K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] C 99981 Carbohydrate metabolism D RA178_04150 sfsA; DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A D RA178_19570 torT; TMAO reductase system periplasmic protein TorT K11930 torT; periplasmic protein TorT D RA178_05710 CBS domain-containing protein K04767 acuB; acetoin utilization protein AcuB D RA178_15675 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D RA178_15680 lactate utilization protein B K18929 lldF; L-lactate dehydrogenase complex protein LldF D RA178_15685 LUD domain-containing protein K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D RA178_00570 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D RA178_20860 formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D RA178_10545 fdx; ISC system 2Fe-2S type ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D RA178_11090 yfaE; class I ribonucleotide reductase maintenance protein YfaE K11107 yfaE; ferredoxin D RA178_12005 rsxG; electron transport complex subunit RsxG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D RA178_12010 electron transport complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D RA178_11985 rsxA; electron transport complex subunit RsxA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D RA178_22090 mioC; FMN-binding protein MioC K06205 mioC; MioC protein D RA178_10525 iscU; Fe-S cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D RA178_17480 norV; anaerobic nitric oxide reductase flavorubredoxin K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D RA178_04050 chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D RA178_12650 chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D RA178_14990 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D RA178_12655 nitrate reductase K02571 napE; periplasmic nitrate reductase NapE D RA178_19505 nitrite reductase K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG D RA178_11795 fldA; flavodoxin FldA K03839 fldA; flavodoxin I D RA178_12635 cytochrome c3 family protein K02569 napC; cytochrome c-type protein NapC D RA178_07695 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D RA178_21120 cytochrome c3 family protein K04013 nrfB; cytochrome c-type protein NrfB D RA178_21115 4Fe-4S dicluster domain-containing protein K04014 nrfC; protein NrfC D RA178_21110 nrfD; cytochrome c nitrite reductase subunit NrfD K04015 nrfD; protein NrfD C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D RA178_08635 cysZ; sulfate transporter CysZ K06203 cysZ; CysZ protein D RA178_12130 VOC family protein K08234 yaeR; glyoxylase I family protein D RA178_06820 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein D RA178_13345 GNAT family protein K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D RA178_11165 lipopolysaccharide assembly protein LapA domain-containing protein K08992 lapA; lipopolysaccharide assembly protein A D RA178_11170 lapB; lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B D RA178_07550 glycosyltransferase family 25 protein K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D RA178_20040 heme biosynthesis HemY N-terminal domain-containing protein K02498 hemY; HemY protein D RA178_02295 ubiB; ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein D RA178_02300 SCP2 sterol-binding domain-containing protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D RA178_20120 accessory factor UbiK family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D RA178_05750 SCP2 sterol-binding domain-containing protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D RA178_00765 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein D RA178_21565 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others D RA178_06960 DoxX family protein K15977 K15977; putative oxidoreductase D RA178_08995 carboxylesterase K06999 K06999; phospholipase/carboxylesterase D RA178_11290 acetate--CoA ligase family protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D RA178_10155 cspD; cold shock domain-containing protein CspD K03704 cspA; cold shock protein D RA178_13910 cold-shock protein K03704 cspA; cold shock protein D RA178_15050 cold-shock protein K03704 cspA; cold shock protein D RA178_19740 rsd; sigma D regulator K07740 rsd; regulator of sigma D D RA178_18180 P-II family nitrogen regulator K04752 glnK; nitrogen regulatory protein P-II 2 D RA178_18710 P-II family nitrogen regulator K04752 glnK; nitrogen regulatory protein P-II 2 D RA178_21385 Tex family protein K06959 tex; protein Tex C 99974 Translation D RA178_19325 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D RA178_17910 META domain-containing protein K03668 hslJ; heat shock protein HslJ D RA178_10160 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D RA178_14380 tig; trigger factor K03545 tig; trigger factor D RA178_12025 msrQ; protein-methionine-sulfoxide reductase heme-binding subunit MsrQ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D RA178_00550 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D RA178_19980 HupE/UreJ family protein K03192 ureJ; urease accessory protein D RA178_15885 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D RA178_12835 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC D RA178_12840 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D RA178_12845 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D RA178_12825 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D RA178_13350 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein D RA178_05900 DsbA family protein K07396 K07396; putative protein-disulfide isomerase D RA178_21360 nfuA; Fe-S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA D RA178_08340 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D RA178_12160 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D RA178_15580 xni; flap endonuclease Xni K01146 xni; protein Xni D RA178_02050 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D RA178_12035 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D RA178_20700 YraN family protein K07460 yraN; putative endonuclease D RA178_00715 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D RA178_00170 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D RA178_11545 replication-associated recombination protein A K07478 ycaJ; putative ATPase D RA178_00180 topoisomerase DNA-binding C4 zinc finger domain-containing protein K07479 yrdD; putative DNA topoisomerase D RA178_03560 IS110 family transposase K07486 K07486; transposase D RA178_08100 IS110 family transposase K07486 K07486; transposase D RA178_10420 IS110-like element ISShes7 family transposase K07486 K07486; transposase D RA178_10430 IS110 family transposase K07486 K07486; transposase D RA178_10810 IS110-like element ISShes7 family transposase K07486 K07486; transposase D RA178_12535 IS110 family transposase K07486 K07486; transposase D RA178_13005 IS110 family transposase K07486 K07486; transposase D RA178_19310 IS110 family transposase K07486 K07486; transposase D RA178_10820 IS110 family transposase K07486 K07486; transposase D RA178_13065 IS110 family transposase K07486 K07486; transposase D RA178_06620 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D RA178_08840 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D RA178_12565 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D RA178_16620 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D RA178_12510 IS3-like element ISSba5 family transposase K07497 K07497; putative transposase D RA178_20255 DDE-type integrase/transposase/recombinase K07497 K07497; putative transposase D RA178_12250 tyrosine-type recombinase/integrase K14059 int; integrase D RA178_12550 site-specific integrase K14059 int; integrase D RA178_12560 site-specific integrase K14059 int; integrase C 99979 Viral proteins C 99998 Others D RA178_14310 pspA; phage shock protein PspA K03969 pspA; phage shock protein A D RA178_01785 rhodanese-like domain-containing protein K03972 pspE; phage shock protein E D RA178_08110 rhodanese-like domain-containing protein K03972 pspE; phage shock protein E D RA178_13170 type I restriction enzyme HsdR N-terminal domain-containing protein K07504 K07504; predicted type IV restriction endonuclease D RA178_09055 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RA178_09915 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D RA178_09920 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D RA178_07485 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D RA178_14630 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D RA178_16445 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D RA178_22095 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D RA178_04305 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D RA178_21645 putP; sodium/proline symporter PutP K03307 TC.SSS; solute:Na+ symporter, SSS family D RA178_20165 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D RA178_04070 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RA178_08310 alanine/glycine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RA178_16725 alanine/glycine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RA178_17770 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D RA178_20935 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family D RA178_00500 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D RA178_04640 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D RA178_05645 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D RA178_12395 aspT; aspartate-alanine antiporter K07085 K07085; putative transport protein C 99978 Cell growth D RA178_08395 septation protein A K06190 ispZ; intracellular septation protein D RA178_19970 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D RA178_00255 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator C 99993 Cell motility D RA178_17540 lpoB; penicillin-binding protein activator LpoB K07337 K07337; penicillin-binding protein activator D RA178_15240 syd; SecY-interacting protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D RA178_19820 ampE; beta-lactamase regulator AmpE K03807 ampE; AmpE protein D RA178_10285 proQ; RNA chaperone ProQ K03607 proQ; ProP effector D RA178_04885 universal stress protein K06149 uspA; universal stress protein A D RA178_11680 uspE; universal stress protein UspE K14055 uspE; universal stress protein E D RA178_01720 typA; translational GTPase TypA K06207 typA; GTP-binding protein D RA178_08940 ChrR family anti-sigma-E factor K07167 chrR; putative transcriptional regulator D RA178_18425 CBS domain-containing protein K07168 K07168; CBS domain-containing membrane protein D RA178_05255 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D RA178_19135 PhoH family protein K07175 phoH2; PhoH-like ATPase D RA178_13505 PrkA family serine protein kinase K07180 prkA; serine protein kinase D RA178_08685 DUF294 nucleotidyltransferase-like domain-containing protein K07182 K07182; CBS domain-containing protein D RA178_04300 TIGR04211 family SH3 domain-containing protein K07184 ygiM; SH3 domain protein D RA178_05675 AhpA/YtjB family protein K07186 smp; membrane protein D RA178_18165 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D RA178_11540 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein D RA178_18240 lolB; lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB D RA178_07475 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D RA178_10185 glycine zipper 2TM domain-containing protein K06077 slyB; outer membrane lipoprotein SlyB D RA178_15100 OmpH family outer membrane protein K06142 hlpA; outer membrane protein D RA178_06090 peptidoglycan DD-metalloendopeptidase family protein K06194 nlpD; lipoprotein NlpD D RA178_05440 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI D RA178_14940 ompW; outer membrane protein OmpW K07275 ompW; outer membrane protein D RA178_03480 DUF481 domain-containing protein K07283 ydiY; putative salt-induced outer membrane protein D RA178_17835 DUF481 domain-containing protein K07283 ydiY; putative salt-induced outer membrane protein D RA178_18145 YajG family lipoprotein K07286 yajG; uncharacterized lipoprotein D RA178_12480 AsmA family protein K07289 asmA; AsmA protein D RA178_02745 efflux RND transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein D RA178_14795 HlyD family efflux transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein D RA178_04820 HlyD family efflux transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D RA178_08550 AI-2E family transporter K11744 tqsA; AI-2 transport protein TqsA D RA178_20145 creD; cell envelope integrity protein CreD K06143 creD; inner membrane protein D RA178_01235 ccmE; cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D RA178_01265 ccmI; c-type cytochrome biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH D RA178_01280 nrfF; heme lyase NrfEFG subunit NrfF K02200 ccmH; cytochrome c-type biogenesis protein CcmH D RA178_19530 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D RA178_06990 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ D RA178_21625 DUF1656 domain-containing protein K21695 aaeX; protein AaeX C 99994 Others D RA178_14700 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D RA178_19105 bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D RA178_09190 glucan biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein D RA178_12765 glucan biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein D RA178_17585 glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein D RA178_14625 TerC family protein K05794 terC; tellurite resistance protein TerC D RA178_03135 cutA; divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein D RA178_17100 apaG; Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein D RA178_20015 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D RA178_03895 bacteriohemerythrin K07216 hr; hemerythrin D RA178_19495 nosD; nitrous oxide reductase family maturation protein NosD K07218 nosD; nitrous oxidase accessory protein D RA178_20855 helix-turn-helix transcriptional regulator K07219 K07219; putative molybdopterin biosynthesis protein D RA178_17210 hutX; heme utilization cystosolic carrier protein HutX K07227 chuX; heme iron utilization protein D RA178_05075 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D RA178_20490 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur D RA178_19500 nitrous oxide reductase accessory protein NosL K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D RA178_08300 CvpA family protein K03558 cvpA; membrane protein required for colicin V production D RA178_04790 glucosaminidase domain-containing protein K03796 bax; Bax protein D RA178_11695 glucosaminidase domain-containing protein K03796 bax; Bax protein D RA178_19350 GNAT family N-acetyltransferase K02348 elaA; ElaA protein D RA178_15330 BON domain-containing protein K04065 osmY; hyperosmotically inducible periplasmic protein D RA178_15035 phosphatase K04477 ycdX; putative hydrolase D RA178_00195 group II truncated hemoglobin K06886 glbN; hemoglobin D RA178_05845 group 1 truncated hemoglobin K06886 glbN; hemoglobin D RA178_07645 patatin-like phospholipase family protein K07001 K07001; NTE family protein D RA178_14115 rssA; patatin-like phospholipase RssA K07001 K07001; NTE family protein D RA178_19790 patatin-like phospholipase family protein K07001 K07001; NTE family protein D RA178_16330 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D RA178_01750 virulence factor BrkB family protein K07058 K07058; membrane protein D RA178_03140 FxsA family protein K07113 fxsA; UPF0716 protein FxsA D RA178_18045 SufE family protein K02426 sufE; cysteine desulfuration protein SufE D RA178_10625 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein D RA178_10130 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein D RA178_19565 VOC family protein K04750 phnB; PhnB protein D RA178_20555 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH D RA178_08400 IucA/IucC family C-terminal-domain containing protein K13255 fhuF; ferric iron reductase protein FhuF D RA178_21560 LemA family protein K03744 lemA; LemA protein D RA178_17525 SlyX family protein K03745 slyX; SlyX protein D RA178_00175 DUF494 family protein K03747 smg; Smg protein D RA178_13245 CreA family protein K05805 creA; CreA protein D RA178_03980 SprT family zinc-dependent metalloprotease K02742 sprT; SprT protein D RA178_08295 SPOR domain-containing protein K03749 dedD; DedD protein D RA178_20755 AAA family ATPase K03112 damX; DamX protein D RA178_10265 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D RA178_10270 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D RA178_06570 DUF368 domain-containing protein K08974 K08974; putative membrane protein D RA178_18315 PH domain-containing protein K08981 K08981; putative membrane protein D RA178_04095 DUF2238 domain-containing protein K08984 yjdF; putative membrane protein D RA178_14290 TIGR01620 family protein K08990 ycjF; putative membrane protein D RA178_21225 DUF1145 domain-containing protein K08993 yhhL; putative membrane protein D RA178_11890 YchJ family protein K09858 K09858; SEC-C motif domain protein D RA178_14930 YbaY family lipoprotein K09914 K09914; putative lipoprotein D RA178_14025 phosphate-starvation-inducible PsiE family protein K13256 psiE; protein PsiE D RA178_15445 PhnA domain-containing protein K06193 phnA; protein PhnA C 99997 Function unknown D RA178_01380 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D RA178_05895 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RA178_14295 YcjX family protein K06918 K06918; uncharacterized protein D RA178_05580 ATP-binding protein K06921 K06921; uncharacterized protein D RA178_15400 DUF134 domain-containing protein K06933 K06933; uncharacterized protein D RA178_13960 DUF1289 domain-containing protein K06938 K06938; uncharacterized protein D RA178_14670 DUF1289 domain-containing protein K06938 K06938; uncharacterized protein D RA178_16980 DUF1289 domain-containing protein K06938 K06938; uncharacterized protein D RA178_00235 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein D RA178_06675 FAD-dependent oxidoreductase K06954 K06954; uncharacterized protein D RA178_00430 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein D RA178_15430 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein D RA178_18745 M14 family metallopeptidase K06987 K06987; uncharacterized protein D RA178_16545 cupin domain-containing protein K06995 K06995; uncharacterized protein D RA178_13965 VOC family protein K06996 K06996; uncharacterized protein D RA178_13975 VOC family protein K06996 K06996; uncharacterized protein D RA178_14610 VOC family protein K06996 K06996; uncharacterized protein D RA178_21270 VOC family protein K06996 K06996; uncharacterized protein D RA178_03845 YqiA/YcfP family alpha/beta fold hydrolase K07000 K07000; uncharacterized protein D RA178_10805 ycfP; alpha/beta hydrolase YcfP K07000 K07000; uncharacterized protein D RA178_10320 MMPL family transporter K07003 K07003; uncharacterized protein D RA178_13305 ExeM/NucH family extracellular endonuclease K07004 K07004; uncharacterized protein D RA178_17510 exeM; extracellular exonuclease ExeM K07004 K07004; uncharacterized protein D RA178_09845 DUF3413 domain-containing protein K07014 K07014; uncharacterized protein D RA178_14735 alpha/beta hydrolase-fold protein K07017 K07017; uncharacterized protein D RA178_04175 hydrolase K07019 K07019; uncharacterized protein D RA178_15610 dienelactone hydrolase family protein K07020 K07020; uncharacterized protein D RA178_16950 acetate uptake transporter K07034 K07034; uncharacterized protein D RA178_19600 neutral zinc metallopeptidase K07054 K07054; uncharacterized protein D RA178_04205 YheV family putative zinc ribbon protein K07070 K07070; uncharacterized protein D RA178_08540 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein D RA178_19625 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein D RA178_04370 sodium-dependent bicarbonate transport family permease K07086 K07086; uncharacterized protein D RA178_19695 SO_0444 family Cu/Zn efflux transporter K07089 K07089; uncharacterized protein D RA178_20535 permease K07089 K07089; uncharacterized protein D RA178_00330 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RA178_02880 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RA178_07735 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RA178_14155 TSUP family transporter K07090 K07090; uncharacterized protein D RA178_14250 TSUP family transporter K07090 K07090; uncharacterized protein D RA178_16220 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RA178_16595 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RA178_11230 PhoX family phosphatase K07093 K07093; uncharacterized protein D RA178_18415 phosphoribosyltransferase family protein K07101 K07101; uncharacterized protein D RA178_00575 yedE; selenium metabolism membrane protein YedE/FdhT K07112 K07112; uncharacterized protein D RA178_18605 NAD(P)-dependent oxidoreductase K07118 K07118; uncharacterized protein D RA178_20695 penicillin-binding protein activator K07121 K07121; uncharacterized protein D RA178_02520 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein D RA178_20930 hypothetical protein K07126 K07126; uncharacterized protein D RA178_20645 MAPEG family protein K07136 K07136; uncharacterized protein D RA178_16255 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein D RA178_06540 DUF418 domain-containing protein K07148 K07148; uncharacterized protein D RA178_08950 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein D RA178_22110 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D RA178_16415 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D RA178_06805 yggU; DUF167 family protein YggU K09131 K09131; uncharacterized protein D RA178_05165 ybeD; DUF493 family protein YbeD K09158 K09158; uncharacterized protein D RA178_12880 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein D RA178_11465 ferritin-like domain-containing protein K09700 K09700; uncharacterized protein D RA178_06680 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein D RA178_18450 cupin domain-containing protein K09705 K09705; uncharacterized protein D RA178_10705 ACT domain-containing protein K09707 K09707; uncharacterized protein D RA178_00675 DUF333 domain-containing protein K09712 K09712; uncharacterized protein D RA178_03950 FapA family protein K09749 K09749; uncharacterized protein D RA178_13555 YaiI/YqxD family protein K09768 K09768; uncharacterized protein D RA178_08390 YciI family protein K09780 K09780; uncharacterized protein D RA178_05045 DUF808 domain-containing protein K09781 K09781; uncharacterized protein D RA178_13510 YeaH/YhbH family protein K09786 K09786; uncharacterized protein D RA178_09040 YbaN family protein K09790 K09790; uncharacterized protein D RA178_14000 Trm112 family protein K09791 K09791; uncharacterized protein D RA178_11670 sulfite exporter TauE/SafE family protein K09792 K09792; uncharacterized protein D RA178_02540 YdcH family protein K09794 K09794; uncharacterized protein D RA178_07070 DUF465 domain-containing protein K09794 K09794; uncharacterized protein D RA178_08130 SIMPL domain-containing protein K09797 K09797; uncharacterized protein D RA178_00245 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein D RA178_15875 RnfH family protein K09801 K09801; uncharacterized protein D RA178_02815 oxidative stress defense protein K09807 K09807; uncharacterized protein D RA178_17305 nqrM; (Na+)-NQR maturation NqrM K05952 K05952; uncharacterized protein D RA178_13580 S1-like domain-containing RNA-binding protein K00243 K00243; uncharacterized protein D RA178_17535 hypothetical protein K09859 K09859; uncharacterized protein D RA178_16720 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein D RA178_19865 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein D RA178_05985 YjaG family protein K09891 K09891; uncharacterized protein D RA178_21925 yihI; Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein D RA178_18565 UPF0149 family protein K09895 K09895; uncharacterized protein D RA178_13190 DUF413 domain-containing protein K09897 K09897; uncharacterized protein D RA178_04170 YheU family protein K09898 K09898; uncharacterized protein D RA178_08575 yfbV; terminus macrodomain insulation protein YfbV K09899 K09899; uncharacterized protein D RA178_12885 YcgL domain-containing protein K09902 K09902; uncharacterized protein D RA178_09850 YejL family protein K09904 K09904; uncharacterized protein D RA178_09880 VOC family protein K09907 K09907; uncharacterized protein D RA178_08740 DUF2057 domain-containing protein K09909 K09909; uncharacterized protein D RA178_14260 DUF2057 domain-containing protein K09909 K09909; uncharacterized protein D RA178_18735 YacL family protein K09910 K09910; uncharacterized protein D RA178_11185 DUF2058 domain-containing protein K09912 K09912; uncharacterized protein D RA178_13585 DUF480 domain-containing protein K09915 K09915; uncharacterized protein D RA178_11070 DUF1315 family protein K09916 K09916; uncharacterized protein D RA178_10275 YebG family protein K09918 K09918; uncharacterized protein D RA178_08795 GNAT family N-acetyltransferase K09919 K09919; uncharacterized protein D RA178_03835 DUF1249 domain-containing protein K09920 K09920; uncharacterized protein D RA178_19995 DUF484 family protein K09921 K09921; uncharacterized protein D RA178_06415 DMT family protein K09922 K09922; uncharacterized protein D RA178_06765 YggL family protein K09923 K09923; uncharacterized protein D RA178_11655 FixH family protein K09926 K09926; uncharacterized protein D RA178_20135 crosslink repair DNA glycosylase YcaQ family protein K09927 K09927; uncharacterized protein D RA178_14020 DUF2062 domain-containing protein K09928 K09928; uncharacterized protein D RA178_09030 putative DNA-binding domain-containing protein K09929 K09929; uncharacterized protein D RA178_09025 DUF692 domain-containing protein K09930 K09930; uncharacterized protein D RA178_03450 DUF2065 domain-containing protein K09937 K09937; uncharacterized protein D RA178_13485 DUF2066 domain-containing protein K09938 K09938; uncharacterized protein D RA178_05320 PepSY-associated TM helix domain-containing protein K09939 K09939; uncharacterized protein D RA178_01490 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein D RA178_14755 DUF1415 domain-containing protein K09941 K09941; uncharacterized protein D RA178_06935 DUF3820 family protein K09954 K09954; uncharacterized protein D RA178_14945 nucleotidyltransferase family protein K09962 K09962; uncharacterized protein D RA178_19230 TraB/GumN family protein K09973 K09973; uncharacterized protein D RA178_07585 HutD family protein K09975 K09975; uncharacterized protein D RA178_10350 YdbL family protein K09978 K09978; uncharacterized protein D RA178_10355 YdbL family protein K09978 K09978; uncharacterized protein D RA178_04340 DUF2170 family protein K09980 K09980; uncharacterized protein D RA178_01310 DUF1993 domain-containing protein K09983 K09983; uncharacterized protein D RA178_10095 DUF1285 domain-containing protein K09986 K09986; uncharacterized protein D RA178_04310 TIGR00153 family protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 3, 2024