+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus oralis

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SOR_1326 methylated-DNA-[protein]-cysteineS-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SOR_0983 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SOR_0947 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SOR_1289 nth; endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SOR_1362 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0984 Nudix hydrolase superfamily protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0923 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0499 7; MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_1390 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_1929 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0025 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SOR_1326 methylated-DNA-[protein]-cysteineS-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SOR_0983 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SOR_0947 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SOR_1810 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SOR_1179 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SOR_1289 nth; endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SOR_0463 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SOR_1482 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SOR_0958 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SOR_1940 polI; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SOR_1804 uvrA; excinuclease ABC-subunit A, (ATPase subunit) K03701 uvrA; excinuclease ABC subunit A E SOR_0916 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SOR_1476 uvrC; excinuclease, subunit C K03703 uvrC; excinuclease ABC subunit C E SOR_0933 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SOR_1940 polI; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E SOR_0958 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SOR_1713 rpoB; DNA-dependent RNA Polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SOR_1712 rpoC; DNA-dependent RNA Polymerase, beta-prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SOR_1752 rpoA; DNA-dependent RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SOR_0396 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F SOR_1545 rpoZ; DNA-dependent RNA Polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SOR_0006 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SOR_1818 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E SOR_1616 putative DNA mismatch repair protein, MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SOR_1814 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SOR_0856 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SOR_0857 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SOR_1150 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SOR_0209 polC; DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SOR_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SOR_0780 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SOR_1225 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SOR_1102 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SOR_0833 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SOR_0958 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SOR_0933 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SOR_0402 ssbB; single-strand DNA-binding protein B K03111 ssb; single-strand DNA-binding protein E SOR_0642 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SOR_1622 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SOR_1705 recA; recombinase A K03553 recA; recombination protein RecA E SOR_1811 ruvA; Holiday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SOR_1734 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SOR_1544 priA; primosomal protein N, (ATP-dependent helicase/Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SOR_0323 ATPase involved in DNA repair, putative K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E SOR_1705 recA; recombinase A K03553 recA; recombination protein RecA E SOR_0027 radA; DNA repair protein, predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E SOR_1975 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E SOR_0545 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SOR_1482 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SOR_0033 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SOR_0562 recR; recombination protein RecR K06187 recR; recombination protein RecR E SOR_0861 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SOR_1640 recU; Holliday junction resolvase/recombination protein U K03700 recU; recombination protein U E SOR_1811 ruvA; Holiday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SOR_1734 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SOR_1007 rexA; exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SOR_1008 rexB; exonuclease RexB, AddB, ATP-dependent nuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SOR_0323 ATPase involved in DNA repair, putative K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SOR_0846 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SOR_1345 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SOR_0866 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SOR_0844 histone-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SOR_1482 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SOR_0033 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SOR_0562 recR; recombination protein RecR K06187 recR; recombination protein RecR F SOR_0958 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SOR_1804 uvrA; excinuclease ABC-subunit A, (ATPase subunit) K03701 uvrA; excinuclease ABC subunit A F SOR_0916 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SOR_1670 dinP; DNA polymerase IV (Pol IV) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SOR_0325 ImpB/MucB/SamB family protein K03502 umuC; DNA polymerase V C Other SOS response factors D SOR_1705 recA; recombinase A K03553 recA; recombination protein RecA D SOR_0324 transcriptional regulator, putative K01356 lexA; repressor LexA [EC:3.4.21.88] D SOR_0861 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SOR_0402 ssbB; single-strand DNA-binding protein B K03111 ssb; single-strand DNA-binding protein D SOR_0642 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SOR_0407 recX; recA-regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SOR_1351 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SOR_1362 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0984 Nudix hydrolase superfamily protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0923 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0499 7; MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_1390 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_1929 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SOR_0025 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SOR_1080 nrdE; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SOR_1081 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SOR_1280 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024