+D GENES KO
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KEGG Orthology (KO) - Stenotrophomonas oahuensis
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:sou00010]
D PDM29_03965 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15050 glk; (GenBank) glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_16035 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15005 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PDM29_03360 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PDM29_07290 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_00920 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PDM29_03010 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PDM29_02995 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PDM29_13565 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PDM29_14750 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PDM29_02985 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PDM29_19495 ppsA; (GenBank) phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PDM29_09495 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PDM29_04440 aceF; (GenBank) dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PDM29_07325 adhP; (GenBank) alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_18245 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_03850 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PDM29_18045 c-type cytochrome K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PDM29_17860 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_06920 lytic murein transglycosylase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
C 00020 Citrate cycle (TCA cycle) [PATH:sou00020]
D PDM29_03150 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PDM29_02025 prpC; (GenBank) 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D PDM29_16260 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_16325 acnB; (GenBank) bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_05235 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PDM29_11845 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D PDM29_20270 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PDM29_20275 sucB; (GenBank) dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_02690 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PDM29_02695 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PDM29_09440 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PDM29_15085 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PDM29_15090 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PDM29_15075 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PDM29_15080 sdhD; (GenBank) succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PDM29_20360 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PDM29_20250 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PDM29_03790 mqo; (GenBank) malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PDM29_13015 mqo; (GenBank) malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PDM29_09495 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PDM29_04440 aceF; (GenBank) dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:sou00030]
D PDM29_15005 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PDM29_15055 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PDM29_15045 pgl; (GenBank) 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D PDM29_04040 gnd; (GenBank) decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PDM29_05460 rpe; (GenBank) ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PDM29_03050 tkt; (GenBank) transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PDM29_11200 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PDM29_03265 rpiA; (GenBank) ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PDM29_10935 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_11375 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PDM29_15040 edd; (GenBank) phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D PDM29_07330 eda; (GenBank) bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PDM29_15035 eda; (GenBank) bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PDM29_19995 PQQ-binding-like beta-propeller repeat protein K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D PDM29_18040 GMC family oxidoreductase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
D PDM29_18035 gluconate 2-dehydrogenase subunit 3 family protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D PDM29_01015 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PDM29_07335 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_07290 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PDM29_03360 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:sou00040]
D PDM29_07405 kduI; (GenBank) 5-dehydro-4-deoxy-D-glucuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D PDM29_07410 kduD; (GenBank) 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D PDM29_20200 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PDM29_15590 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PDM29_05460 rpe; (GenBank) ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PDM29_17910 xylB; (GenBank) xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D PDM29_17905 xylA; (GenBank) xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D PDM29_19760 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:sou00051]
D PDM29_16070 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PDM29_10300 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10265 gmd; (GenBank) GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PDM29_19990 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D PDM29_18880 SDR family NAD(P)-dependent oxidoreductase K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401]
D PDM29_03360 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PDM29_07290 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PDM29_17905 xylA; (GenBank) xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_00920 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PDM29_10270 NAD-dependent epimerase/dehydratase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D PDM29_12360 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:sou00052]
D PDM29_17860 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D PDM29_15590 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_03965 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15050 glk; (GenBank) glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_16035 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_03360 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PDM29_05875 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D PDM29_12670 alpha-glucosidase family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PDM29_12680 glycoside hydrolase family 97 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PDM29_05865 SIS domain-containing protein K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:sou00053]
D PDM29_20200 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PDM29_19990 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D PDM29_06645 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PDM29_19760 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00500 Starch and sucrose metabolism [PATH:sou00500]
D PDM29_12670 alpha-glucosidase family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PDM29_12680 glycoside hydrolase family 97 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PDM29_15590 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PDM29_05175 putative glycoside hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_07895 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_09345 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17875 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17900 exo 1,3/1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_18895 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_02650 otsA; (GenBank) alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D PDM29_02640 otsB; (GenBank) trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D PDM29_13260 treA; (GenBank) alpha,alpha-trehalase TreA K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_03965 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15050 glk; (GenBank) glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_16035 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15005 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PDM29_16070 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:sou00620]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PDM29_09495 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PDM29_04440 aceF; (GenBank) dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_07325 adhP; (GenBank) alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_18245 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PDM29_03850 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PDM29_18045 c-type cytochrome K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D PDM29_02985 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PDM29_13820 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PDM29_05005 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PDM29_05010 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PDM29_00950 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PDM29_09440 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PDM29_18865 lldD; (GenBank) FMN-dependent L-lactate dehydrogenase LldD K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D PDM29_02625 thiamine pyrophosphate-binding protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D PDM29_13345 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D PDM29_04290 gloA; (GenBank) lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D PDM29_11945 gloB; (GenBank) hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PDM29_01015 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PDM29_03565 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PDM29_03790 mqo; (GenBank) malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PDM29_13015 mqo; (GenBank) malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PDM29_20360 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PDM29_20250 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PDM29_10890 ppc; (GenBank) phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PDM29_19495 ppsA; (GenBank) phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PDM29_08485 aceB; (GenBank) malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_03485 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:sou00630]
D PDM29_08490 aceA; (GenBank) isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D PDM29_08485 aceB; (GenBank) malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PDM29_03150 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PDM29_02025 prpC; (GenBank) 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D PDM29_16260 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_16325 acnB; (GenBank) bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_00180 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D PDM29_03640 phbB; (GenBank) acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D PDM29_01920 catalase K03781 katE; catalase [EC:1.11.1.6]
D PDM29_08915 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6]
D PDM29_01015 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PDM29_02990 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PDM29_10095 gph; (GenBank) phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PDM29_07785 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_14280 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_10640 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PDM29_01895 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PDM29_02245 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_02240 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D PDM29_12785 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D PDM29_02050 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D PDM29_07330 eda; (GenBank) bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PDM29_15035 eda; (GenBank) bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PDM29_00375 cupin domain-containing protein K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2]
D PDM29_08600 purU; (GenBank) formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PDM29_19900 hutG; (GenBank) N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:sou00640]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PDM29_11675 prpE; (GenBank) propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D PDM29_05565 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PDM29_05570 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PDM29_20305 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D PDM29_05580 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_01985 YhdH/YhfP family quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_13820 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PDM29_05005 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PDM29_05010 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PDM29_00950 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PDM29_14240 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PDM29_02695 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PDM29_02690 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PDM29_08665 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PDM29_02025 prpC; (GenBank) 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D PDM29_02020 acnD; (GenBank) Fe/S-dependent 2-methylisocitrate dehydratase AcnD K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D PDM29_02015 prpF; (GenBank) 2-methylaconitate cis-trans isomerase PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D PDM29_16260 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_16325 acnB; (GenBank) bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_02030 prpB; (GenBank) methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D PDM29_08490 aceA; (GenBank) isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
C 00650 Butanoate metabolism [PATH:sou00650]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_15600 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_15435 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D PDM29_19465 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D PDM29_19470 phaE; (GenBank) class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE
D PDM29_13805 phaZ; (GenBank) polyhydroxyalkanoate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D PDM29_00180 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D PDM29_03640 phbB; (GenBank) acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D PDM29_15085 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PDM29_15090 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PDM29_15075 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PDM29_15080 sdhD; (GenBank) succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PDM29_14305 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_17700 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_09440 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PDM29_16155 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_18095 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_10365 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D PDM29_10370 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D PDM29_03470 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_17855 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_03475 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:sou00660]
D PDM29_03470 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_17855 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_03475 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D PDM29_02695 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PDM29_02690 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PDM29_03490 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PDM29_03495 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PDM29_03500 leuB; (GenBank) 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:sou00562]
D PDM29_00165 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PDM29_15185 phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D PDM29_08285 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D PDM29_08665 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PDM29_00920 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:sou00190]
D PDM29_00905 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PDM29_00900 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PDM29_00895 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D PDM29_00890 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D PDM29_00885 nuoE; (GenBank) NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PDM29_00880 nuoF; (GenBank) NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PDM29_00875 nuoG; (GenBank) NADH-quinone oxidoreductase subunit NuoG K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PDM29_00870 nuoH; (GenBank) NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PDM29_00865 nuoI; (GenBank) NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PDM29_00860 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PDM29_00855 nuoK; (GenBank) NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PDM29_00850 nuoL; (GenBank) NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PDM29_00845 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PDM29_00840 nuoN; (GenBank) NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PDM29_04750 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D PDM29_15085 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PDM29_15090 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PDM29_15075 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PDM29_15080 sdhD; (GenBank) succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PDM29_14365 petA; (GenBank) ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PDM29_14370 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PDM29_14375 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PDM29_09285 cyoE; (GenBank) heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PDM29_13385 cyoD; (GenBank) cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D PDM29_09260 cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D PDM29_09245 ctaD; (GenBank) cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D PDM29_09240 coxB; (GenBank) cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D PDM29_09255 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D PDM29_09280 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PDM29_13380 cyoC; (GenBank) cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D PDM29_13375 cyoB; (GenBank) cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D PDM29_13370 cyoA; (GenBank) ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D PDM29_06485 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PDM29_20630 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PDM29_06480 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PDM29_20635 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PDM29_20640 cydX; (GenBank) cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D PDM29_08315 cytochrome C K08738 CYC; cytochrome c
D PDM29_04395 atpA; (GenBank) F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PDM29_04385 atpD; (GenBank) F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PDM29_04390 atpG; (GenBank) F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PDM29_04400 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PDM29_04380 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PDM29_18430 atpC; (GenBank) ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PDM29_04415 atpB; (GenBank) F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PDM29_04405 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PDM29_04410 atpE; (GenBank) F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PDM29_03420 ppa; (GenBank) inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PDM29_15195 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PDM29_11810 ppk1; (GenBank) polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PDM29_11335 ppk2; (GenBank) polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:sou00710]
D PDM29_02995 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PDM29_03010 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_07290 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PDM29_03050 tkt; (GenBank) transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PDM29_03265 rpiA; (GenBank) ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PDM29_00920 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PDM29_05460 rpe; (GenBank) ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PDM29_11200 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PDM29_10890 ppc; (GenBank) phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PDM29_03565 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:sou00720]
D PDM29_19495 ppsA; (GenBank) phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PDM29_10890 ppc; (GenBank) phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PDM29_20360 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PDM29_20250 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PDM29_15085 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PDM29_15090 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PDM29_15075 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PDM29_15080 sdhD; (GenBank) succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PDM29_02690 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PDM29_02695 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_05235 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PDM29_16260 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_16325 acnB; (GenBank) bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PDM29_13820 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PDM29_05005 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PDM29_05010 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PDM29_00950 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PDM29_15655 folD; (GenBank) bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PDM29_10850 metF; (GenBank) methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:sou00680]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PDM29_03760 fghA; (GenBank) S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D PDM29_10640 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PDM29_14750 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PDM29_10890 ppc; (GenBank) phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_07290 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PDM29_03360 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PDM29_19495 ppsA; (GenBank) phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PDM29_13565 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PDM29_16115 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PDM29_19855 serC; (GenBank) 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:sou00910]
D PDM29_13410 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D PDM29_20140 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PDM29_07785 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_14280 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_07595 gltB; (GenBank) glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PDM29_07590 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PDM29_20095 can; (GenBank) carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:sou00920]
D PDM29_16275 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PDM29_16285 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D PDM29_16280 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PDM29_17755 msuE; (GenBank) FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PDM29_02260 cysQ; (GenBank) 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PDM29_04855 sulfite reductase flavoprotein subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D PDM29_12515 sulfite reductase flavoprotein subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D PDM29_16905 sulfite reductase flavoprotein subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D PDM29_14180 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PDM29_02965 cysK; (GenBank) cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PDM29_04285 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PDM29_02140 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PDM29_20610 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PDM29_02135 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PDM29_00415 acyl-CoA dehydrogenase C-terminal domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:sou00061]
D PDM29_13820 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PDM29_05005 accB; (GenBank) acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PDM29_05010 accC; (GenBank) acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PDM29_00950 accD; (GenBank) acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PDM29_01395 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D PDM29_06455 acyl carrier protein K02078 acpP; acyl carrier protein
D PDM29_06460 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D PDM29_12100 acpP; (GenBank) acyl carrier protein K02078 acpP; acyl carrier protein
D PDM29_12090 fabD; (GenBank) ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_12975 mdcH; (GenBank) malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_12080 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PDM29_19610 beta-ketoacyl-ACP synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PDM29_06400 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PDM29_10070 fabB; (GenBank) beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PDM29_06385 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PDM29_12105 fabF; (GenBank) beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PDM29_05920 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_06390 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_12095 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_15870 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_10075 fabA; (GenBank) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D PDM29_13845 fabZ; (GenBank) 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PDM29_15435 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D PDM29_16245 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:sou00071]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_15600 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D PDM29_02205 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D PDM29_08330 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PDM29_16245 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PDM29_07325 adhP; (GenBank) alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_18245 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis
D PDM29_01395 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D PDM29_06455 acyl carrier protein K02078 acpP; acyl carrier protein
D PDM29_06460 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D PDM29_12100 acpP; (GenBank) acyl carrier protein K02078 acpP; acyl carrier protein
D PDM29_12090 fabD; (GenBank) ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_12975 mdcH; (GenBank) malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:sou00561]
D PDM29_02050 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D PDM29_03850 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PDM29_04460 glpK; (GenBank) glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PDM29_07555 plsB; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D PDM29_11035 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PDM29_08220 lysophospholipase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
C 00564 Glycerophospholipid metabolism [PATH:sou00564]
D PDM29_08000 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PDM29_04455 glpD; (GenBank) glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D PDM29_07555 plsB; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D PDM29_11035 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PDM29_08285 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D PDM29_20345 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D PDM29_17200 CBASS cGAMP-activated phospholipase K06900 capV; cGAMP-activated phospholipase [EC:3.1.1.32 3.1.1.-]
D PDM29_07130 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PDM29_18855 CDP-diacylglycerol diphosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D PDM29_05050 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PDM29_13870 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PDM29_10435 pssA; (GenBank) CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PDM29_19475 CDP-alcohol phosphatidyltransferase family protein K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PDM29_01035 asd; (GenBank) archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D PDM29_14550 pgsA; (GenBank) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PDM29_05400 haloacid dehalogenase-like hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D PDM29_06585 cls; (GenBank) cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D PDM29_07220 cls; (GenBank) cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D PDM29_01620 phospholipase D family protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:sou00565]
D PDM29_20345 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D PDM29_08285 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:sou00600]
D PDM29_03910 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D PDM29_12865 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D PDM29_12895 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D PDM29_17000 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D PDM29_17475 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D PDM29_03975 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D PDM29_20345 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D PDM29_20345 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:sou00592]
D PDM29_20345 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D PDM29_17200 CBASS cGAMP-activated phospholipase K06900 capV; cGAMP-activated phospholipase [EC:3.1.1.32 3.1.1.-]
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:sou01040]
D PDM29_07485 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PDM29_18185 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PDM29_13510 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D PDM29_13505 ferredoxin reductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D PDM29_10995 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D PDM29_13180 tesB; (GenBank) acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:sou00230]
D PDM29_11240 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D PDM29_02265 nudE; (GenBank) ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_11375 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PDM29_11765 purF; (GenBank) amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PDM29_05090 purD; (GenBank) phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PDM29_12440 purN; (GenBank) phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PDM29_13150 purT; (GenBank) formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D PDM29_10525 purL; (GenBank) phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D PDM29_12455 purM; (GenBank) phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PDM29_14415 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D PDM29_14410 purE; (GenBank) 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PDM29_05470 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PDM29_20255 purB; (GenBank) adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PDM29_05080 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PDM29_15475 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PDM29_20130 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PDM29_14780 surE; (GenBank) 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PDM29_02660 pgeF; (GenBank) peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PDM29_01705 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D PDM29_15660 guaB; (GenBank) IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PDM29_15610 ndk; (GenBank) nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PDM29_03205 rdgB; (GenBank) RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PDM29_17820 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D PDM29_17815 xanthine dehydrogenase family protein subunit M K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D PDM29_17810 paoA; (GenBank) aldehyde dehydrogenase iron-sulfur subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D PDM29_06835 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PDM29_08125 hypothetical protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PDM29_15665 guaA; (GenBank) glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PDM29_03185 gmk; (GenBank) guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PDM29_08560 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PDM29_18440 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PDM29_08565 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PDM29_18445 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PDM29_03175 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PDM29_11805 ppx; (GenBank) exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PDM29_02360 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D PDM29_01970 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PDM29_04120 carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D PDM29_03695 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D PDM29_14455 ppnN; (GenBank) nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D PDM29_03355 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PDM29_02255 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PDM29_11100 symmetrical bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D PDM29_01715
C 00240 Pyrimidine metabolism [PATH:sou00240]
D PDM29_16190 carB; (GenBank) carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PDM29_16185 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PDM29_12325 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PDM29_00110 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PDM29_15790 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D PDM29_09125 pyrE; (GenBank) orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PDM29_07540 pyrF; (GenBank) orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PDM29_13885 pyrH; (GenBank) UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PDM29_15610 ndk; (GenBank) nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PDM29_02255 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PDM29_01265 Maf family nucleotide pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D PDM29_01610 M48 family metallopeptidase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D PDM29_14745 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PDM29_15555 cmk; (GenBank) (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D PDM29_20130 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PDM29_14780 surE; (GenBank) 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PDM29_15175 upp; (GenBank) uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D PDM29_14455 ppnN; (GenBank) nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D PDM29_04145 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D PDM29_01095 dcd; (GenBank) dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PDM29_08560 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PDM29_18440 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PDM29_08565 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PDM29_18445 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PDM29_12120 tmk; (GenBank) dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PDM29_09080 dut; (GenBank) dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PDM29_07515 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D PDM29_11065 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PDM29_09470 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:sou00250]
D PDM29_11310 asparaginase domain-containing protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PDM29_11400 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D PDM29_13975 asnB; (GenBank) asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PDM29_20300 asnB; (GenBank) asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PDM29_20555 amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D PDM29_03665 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PDM29_00070 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PDM29_00050 argH; (GenBank) argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PDM29_01970 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PDM29_20255 purB; (GenBank) adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PDM29_12325 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PDM29_14305 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_17700 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_07595 gltB; (GenBank) glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PDM29_07590 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PDM29_20140 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PDM29_09235 putA; (GenBank) bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PDM29_07785 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_14280 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_16190 carB; (GenBank) carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PDM29_16185 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PDM29_03950 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PDM29_04340 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PDM29_11765 purF; (GenBank) amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:sou00260]
D PDM29_15955 thrA; (GenBank) bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D PDM29_12645 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D PDM29_01010 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PDM29_02130 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PDM29_15960 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D PDM29_15965 thrC; (GenBank) threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PDM29_17735 ltaE; (GenBank) low-specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D PDM29_10640 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PDM29_01015 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PDM29_13565 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PDM29_02050 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D PDM29_16115 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PDM29_19855 serC; (GenBank) 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PDM29_11725 kbl; (GenBank) glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D PDM29_11735 tdh; (GenBank) L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D PDM29_01895 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PDM29_02245 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_02240 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D PDM29_10435 pssA; (GenBank) CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PDM29_19475 CDP-alcohol phosphatidyltransferase family protein K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PDM29_10230 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D PDM29_10235 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PDM29_02120 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PDM29_03480 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PDM29_05935 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PDM29_00955 trpA; (GenBank) tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PDM29_00960 trpB; (GenBank) tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:sou00270]
D PDM29_02965 cysK; (GenBank) cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PDM29_04285 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PDM29_10235 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PDM29_10230 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D PDM29_20175 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_20180 metH; (GenBank) methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_08620 metE; (GenBank) 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PDM29_17745 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PDM29_10905 metK; (GenBank) methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PDM29_05385 speD; (GenBank) adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PDM29_05670 speE; (GenBank) polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D PDM29_02660 pgeF; (GenBank) peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PDM29_00135 TRZ/ATZ family hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D PDM29_01700 S-methyl-5'-thioinosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D PDM29_20005 mtnA; (GenBank) S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D PDM29_16095 methylthioribulose 1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D PDM29_16085 mtnC; (GenBank) acireductone synthase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D PDM29_16090 acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D PDM29_07295 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PDM29_10110 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D PDM29_00710 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09575 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09745 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_10880 ahcY; (GenBank) adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PDM29_15955 thrA; (GenBank) bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D PDM29_12645 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D PDM29_01010 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PDM29_02130 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PDM29_15960 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D PDM29_02140 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PDM29_20610 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PDM29_02135 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PDM29_11300 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PDM29_03855 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D PDM29_02315 gshB; (GenBank) glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PDM29_14180 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PDM29_11660 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PDM29_02120 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PDM29_16115 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PDM29_19855 serC; (GenBank) 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:sou00280]
D PDM29_11300 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PDM29_01630 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D PDM29_05565 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PDM29_05570 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PDM29_20305 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D PDM29_05580 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_08525 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PDM29_08685 mmsB; (GenBank) 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D PDM29_08665 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PDM29_14240 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PDM29_08515 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D PDM29_08520 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D PDM29_16160 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D PDM29_16155 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_18095 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_10365 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D PDM29_10370 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:sou00290]
D PDM29_03480 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PDM29_05935 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PDM29_03490 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PDM29_03495 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PDM29_03500 leuB; (GenBank) 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PDM29_03470 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_17855 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_03475 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D PDM29_03465 ilvC; (GenBank) ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PDM29_05985 ilvD; (GenBank) dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PDM29_11300 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PDM29_01630 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D PDM29_03665 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PDM29_03485 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:sou00300]
D PDM29_02130 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PDM29_15955 thrA; (GenBank) bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D PDM29_12645 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D PDM29_01010 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PDM29_14955 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PDM29_16180 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PDM29_13950 dapD; (GenBank) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PDM29_03300 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PDM29_13970 dapE; (GenBank) succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PDM29_04200 dapF; (GenBank) diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PDM29_10760 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PDM29_10765 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:sou00310]
D PDM29_15810 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D PDM29_20275 sucB; (GenBank) dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_08330 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_14305 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_17700 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_09435 VOC family protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
C 00220 Arginine biosynthesis [PATH:sou00220]
D PDM29_00075 N-acetylornithine carbamoyltransferase K09065 argF; N-acetylornithine carbamoyltransferase [EC:2.1.3.9]
D PDM29_00070 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PDM29_00050 argH; (GenBank) argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PDM29_08815 rocF; (GenBank) arginase K01476 rocF; arginase [EC:3.5.3.1]
D PDM29_16945 arcA; (GenBank) arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D PDM29_07785 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_14280 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_16190 carB; (GenBank) carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PDM29_16185 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PDM29_20140 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PDM29_03665 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PDM29_00060 acetylglutamate kinase K22478 K22478; bifunctional N-acetylglutamate synthase/kinase [EC:2.3.1.1 2.7.2.8]
D PDM29_00055 argC; (GenBank) N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PDM29_03300 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PDM29_00065 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:sou00330]
D PDM29_04145 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D PDM29_19030 lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D PDM29_05665 speA; (GenBank) arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D PDM29_15535 carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D PDM29_05670 speE; (GenBank) polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D PDM29_05385 speD; (GenBank) adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PDM29_14245 aldehyde dehydrogenase K12254 kauB; 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehyde dehydrogenase [EC:1.2.1.54 1.2.1.-]
D PDM29_11640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PDM29_14275 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D PDM29_08815 rocF; (GenBank) arginase K01476 rocF; arginase [EC:3.5.3.1]
D PDM29_12270 proC; (GenBank) pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PDM29_09235 putA; (GenBank) bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PDM29_00040 proB; (GenBank) glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PDM29_00035 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D PDM29_11230 pip; (GenBank) prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism [PATH:sou00340]
D PDM29_15990 hisG; (GenBank) ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PDM29_16025 hisIE; (GenBank) bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D PDM29_16015 hisA; (GenBank) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D PDM29_16010 hisH; (GenBank) imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PDM29_16020 hisF; (GenBank) imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PDM29_16005 hisB; (GenBank) bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D PDM29_16000 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_20030 pyridoxal phosphate-dependent aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_15995 hisD; (GenBank) histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D PDM29_06430 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D PDM29_19895 hutH; (GenBank) histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D PDM29_19905 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D PDM29_19890 hutI; (GenBank) imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D PDM29_19885 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D PDM29_19900 hutG; (GenBank) N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D PDM29_06950 egtD; (GenBank) L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:sou00350]
D PDM29_16000 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_20030 pyridoxal phosphate-dependent aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_07295 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PDM29_05530 hppD; (GenBank) 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D PDM29_05525 hmgA; (GenBank) homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D PDM29_10205 maiA; (GenBank) maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D PDM29_10200 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PDM29_07325 adhP; (GenBank) alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_18245 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_14305 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_17700 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_02905 fumarylacetoacetate hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:sou00360]
D PDM29_07420 phhA; (GenBank) phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D PDM29_16000 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_20030 pyridoxal phosphate-dependent aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_07295 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PDM29_05530 hppD; (GenBank) 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D PDM29_10025 D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D PDM29_13455 katG; (GenBank) catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D PDM29_11640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PDM29_12565 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D PDM29_07375 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:sou00380]
D PDM29_05560 tryptophan 2,3-dioxygenase family protein K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D PDM29_20110 NAD(P)/FAD-dependent oxidoreductase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9]
D PDM29_20105 kynU; (GenBank) kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3]
D PDM29_20100 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
D PDM29_20275 sucB; (GenBank) dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_08330 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_11640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PDM29_01920 catalase K03781 katE; catalase [EC:1.11.1.6]
D PDM29_08915 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6]
D PDM29_13455 katG; (GenBank) catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sou00400]
D PDM29_04810 aroG; (GenBank) 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PDM29_11630 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PDM29_02060 aroB; (GenBank) 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D PDM29_08455 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D PDM29_05000 aroQ; (GenBank) type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PDM29_06015 aroE; (GenBank) shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PDM29_02055 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PDM29_19845 aroA; (GenBank) 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PDM29_01020 aroC; (GenBank) chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PDM29_05420 trpE; (GenBank) anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PDM29_05415 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PDM29_05410 trpD; (GenBank) anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PDM29_00995 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D PDM29_05405 trpC; (GenBank) indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PDM29_00955 trpA; (GenBank) tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PDM29_00960 trpB; (GenBank) tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PDM29_19850 pheA; (GenBank) prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D PDM29_15365 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PDM29_16000 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_20030 pyridoxal phosphate-dependent aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_07295 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PDM29_07420 phhA; (GenBank) phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D PDM29_06475 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:sou00410]
D PDM29_15000 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D PDM29_14995 panC; (GenBank) pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PDM29_14240 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_08665 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:sou00430]
D PDM29_03460 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_15165 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_20140 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:sou00450]
D PDM29_02135 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PDM29_20175 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_20180 metH; (GenBank) methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_08620 metE; (GenBank) 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PDM29_17745 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PDM29_10235 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PDM29_12585 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D PDM29_16770 trxB; (GenBank) thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PDM29_17260 trxB; (GenBank) thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PDM29_01510 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:sou00460]
D PDM29_05175 putative glycoside hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_07895 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_09345 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17875 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17900 exo 1,3/1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_18895 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_03460 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_15165 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_11310 asparaginase domain-containing protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PDM29_11400 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D PDM29_10640 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:sou00470]
D PDM29_10030 alr; (GenBank) alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PDM29_10790 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_13645 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_09385 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D PDM29_04200 dapF; (GenBank) diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PDM29_12645 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D PDM29_19785 proline racemase family protein K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D PDM29_19770 FAD-dependent oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-]
D PDM29_19780 FAD-dependent oxidoreductase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-]
D PDM29_19775 (2Fe-2S)-binding protein K22550 lhpD; D-hydroxyproline dehydrogenase subunit gamma
D PDM29_19765 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D PDM29_19760 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PDM29_10025 D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:sou00480]
D PDM29_03460 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_15165 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_03855 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D PDM29_02315 gshB; (GenBank) glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PDM29_08920 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PDM29_10460 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PDM29_02615 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_04740 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_07085 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_11685 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_14035 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_14660 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_15465 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_16830 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_20355 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_01150 gorA; (GenBank) glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D PDM29_05235 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PDM29_04040 gnd; (GenBank) decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PDM29_15055 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PDM29_07070 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PDM29_20210 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PDM29_20380 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PDM29_02000 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D PDM29_05670 speE; (GenBank) polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:sou00520]
D PDM29_09145 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D PDM29_00125 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D PDM29_12480 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D PDM29_12475 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D PDM29_05870 ROK family protein K28207 nagK; N-acetylglucosamine kinase [EC:2.7.1.59]
D PDM29_04375 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PDM29_12420 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PDM29_15785 murB; (GenBank) UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PDM29_00775 glycoside hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D PDM29_01710 nagZ; (GenBank) beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PDM29_03975 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PDM29_03945 nagA; (GenBank) N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D PDM29_00945 glmM; (GenBank) phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D PDM29_03950 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PDM29_04340 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PDM29_16070 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PDM29_15005 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PDM29_10300 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PDM29_17880 glycoside hydrolase family 43 protein K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D PDM29_10340 SDR family oxidoreductase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D PDM29_06645 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PDM29_03965 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15050 glk; (GenBank) glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_16035 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_15590 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PDM29_20200 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PDM29_12360 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PDM29_10325 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00541 Biosynthesis of various nucleotide sugars [PATH:sou00541]
D PDM29_04375 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PDM29_14675 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D PDM29_12410 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PDM29_15815 kdsA; (GenBank) 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PDM29_12405 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PDM29_14535 kdsB; (GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PDM29_15590 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PDM29_20200 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PDM29_10325 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PDM29_10320 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PDM29_10330 rfbC; (GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PDM29_10335 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PDM29_10300 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PDM29_10265 gmd; (GenBank) GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PDM29_10270 NAD-dependent epimerase/dehydratase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:sou00511]
D PDM29_03975 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PDM29_16080 glycoside hydrolase family 2 protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
D PDM29_16040 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444 AGA; N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
C 00540 Lipopolysaccharide biosynthesis [PATH:sou00540]
D PDM29_13840 lpxA; (GenBank) acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PDM29_10810 lpxC; (GenBank) UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PDM29_13850 lpxD; (GenBank) UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PDM29_11785 lpxH; (GenBank) UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PDM29_13835 lpxB; (GenBank) lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PDM29_14530 lpxK; (GenBank) tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PDM29_03535 waaA; (GenBank) lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PDM29_03530 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PDM29_04600 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PDM29_05675 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PDM29_17045 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PDM29_04075 lipid A deacylase LpxR family protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-]
D PDM29_17030 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D PDM29_11985 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D PDM29_04635 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:sou00542]
D PDM29_10260 glycosyltransferase K24658 wbdA; O-antigen biosynthesis alpha-1,2-mannosyltransferase [EC:2.4.1.371 2.4.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:sou00550]
D PDM29_12420 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PDM29_15785 murB; (GenBank) UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PDM29_10785 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PDM29_12655 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
D PDM29_12650 murL; (GenBank) UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase K23170 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase [EC:5.1.1.23]
D PDM29_10760 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PDM29_10790 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_13645 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_10765 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PDM29_13875 uppS; (GenBank) polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PDM29_07780 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PDM29_11790 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PDM29_10770 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PDM29_10780 murG; (GenBank) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PDM29_02175 mtgA; (GenBank) monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_03115 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PDM29_02340 mrcB; (GenBank) penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D PDM29_02005 pbpC; (GenBank) penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D PDM29_10775 ftsW; (GenBank) putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_04095 rodA; (GenBank) rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_04100 mrdA; (GenBank) penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PDM29_10755 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PDM29_04080 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D PDM29_13125 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:sou00552]
D PDM29_07780 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PDM29_11790 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:sou00543]
D PDM29_00020 pgaC; (GenBank) poly-beta-1,6-N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D PDM29_00025 pgaD; (GenBank) poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD K11937 pgaD; biofilm PGA synthesis protein PgaD
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:sou00730]
D PDM29_14925 thiD; (GenBank) bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PDM29_00425 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PDM29_02880 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PDM29_03285 thiE; (GenBank) thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PDM29_10680 thiL; (GenBank) thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PDM29_03660 rsgA; (GenBank) ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PDM29_01215 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D PDM29_03355 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:sou00740]
D PDM29_04605 ribA; (GenBank) GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D PDM29_10665 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PDM29_10650 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PDM29_08925 HAD-IA family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D PDM29_10670 ribH; (GenBank) 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PDM29_10660 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PDM29_13230 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PDM29_07465 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D PDM29_18755 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D PDM29_17755 msuE; (GenBank) FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PDM29_11240 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:sou00750]
D PDM29_02045 pdxH; (GenBank) pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D PDM29_15360 pdxY; (GenBank) pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D PDM29_19855 serC; (GenBank) 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PDM29_11115 pdxA; (GenBank) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D PDM29_07230 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D PDM29_15965 thrC; (GenBank) threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:sou00760]
D PDM29_14400 nadC; (GenBank) carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PDM29_10615 pncB; (GenBank) nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D PDM29_20130 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PDM29_14780 surE; (GenBank) 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PDM29_08630 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase K13522 K13522; bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-]
D PDM29_01300 nadD; (GenBank) nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PDM29_02255 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PDM29_05310 nudC; (GenBank) NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D PDM29_02685 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D PDM29_14850 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D PDM29_08610 pncA; (GenBank) bifunctional nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D PDM29_08625 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D PDM29_20135 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PDM29_11260 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PDM29_11280 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PDM29_11285 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D PDM29_14305 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PDM29_17700 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:sou00770]
D PDM29_03470 ilvG; (GenBank) acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_17855 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PDM29_03475 acetolactate synthase K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D PDM29_03465 ilvC; (GenBank) ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PDM29_05985 ilvD; (GenBank) dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PDM29_14990 panB; (GenBank) 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D PDM29_06250 panE; (GenBank) 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PDM29_14995 panC; (GenBank) pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PDM29_08780 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D PDM29_09075 coaBC; (GenBank) bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PDM29_02255 mazG; (GenBank) nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PDM29_15150 coaD; (GenBank) pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PDM29_02835 coaE; (GenBank) dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PDM29_06665 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D PDM29_11300 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PDM29_15000 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:sou00780]
D PDM29_05925 bioC; (GenBank) malonyl-ACP O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D PDM29_06400 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PDM29_10070 fabB; (GenBank) beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PDM29_06385 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PDM29_12105 fabF; (GenBank) beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PDM29_05920 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_06390 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_12095 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_15870 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_13845 fabZ; (GenBank) 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PDM29_05915 bioH; (GenBank) pimeloyl-ACP methyl ester esterase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D PDM29_05910 bioF; (GenBank) 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PDM29_02270 bioA; (GenBank) adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PDM29_10115 bioD; (GenBank) dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D PDM29_08775 birA; (GenBank) bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:sou00785]
D PDM29_04065 lipB; (GenBank) lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PDM29_04060 lipA; (GenBank) lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_09495 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PDM29_04440 aceF; (GenBank) dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PDM29_20270 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PDM29_20275 sucB; (GenBank) dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PDM29_05565 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PDM29_05570 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PDM29_20305 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D PDM29_05580 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PDM29_01895 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PDM29_02245 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PDM29_02240 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:sou00790]
D PDM29_06985 folE; (GenBank) GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PDM29_01215 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D PDM29_09335 folB; (GenBank) dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D PDM29_04010 folK; (GenBank) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PDM29_14985 folK; (GenBank) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PDM29_14830 folP; (GenBank) dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PDM29_11070 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PDM29_11750 folC; (GenBank) bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PDM29_04605 ribA; (GenBank) GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D PDM29_10665 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PDM29_12110 aminodeoxychorismate synthase component I K25578 pabB; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component I [EC:2.6.1.123]
D PDM29_10165 queD; (GenBank) 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PDM29_20455 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PDM29_07420 phhA; (GenBank) phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D PDM29_04005 pteridine reductase K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D PDM29_02435 queE; (GenBank) 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PDM29_02430 queC; (GenBank) 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PDM29_05250 queF; (GenBank) NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PDM29_17785 moaA; (GenBank) GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PDM29_17790 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PDM29_17780 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PDM29_18165 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PDM29_17830 nucleotidyltransferase family protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D PDM29_17795 NTP transferase domain-containing protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:sou00670]
D PDM29_11070 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PDM29_15655 folD; (GenBank) bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PDM29_10640 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PDM29_12440 purN; (GenBank) phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PDM29_05080 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PDM29_02245 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PDM29_20175 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_20180 metH; (GenBank) methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_11065 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PDM29_08600 purU; (GenBank) formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PDM29_10850 metF; (GenBank) methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PDM29_03255 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D PDM29_10905 metK; (GenBank) methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PDM29_10880 ahcY; (GenBank) adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PDM29_01895 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_02240 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D PDM29_10230 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D PDM29_10235 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:sou00860]
D PDM29_13615 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PDM29_11350 hemA; (GenBank) glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PDM29_03290 hemL; (GenBank) glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PDM29_06030 hemB; (GenBank) porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PDM29_04485 hemC; (GenBank) hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PDM29_07975 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D PDM29_02070 hemE; (GenBank) uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PDM29_06500 hemF; (GenBank) oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D PDM29_14645 hemN; (GenBank) oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D PDM29_13815 CopD family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D PDM29_06865 hemH; (GenBank) ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PDM29_07970 uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PDM29_09285 cyoE; (GenBank) heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PDM29_09280 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PDM29_11135 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PDM29_03380 biliverdin-producing heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D PDM29_05345 bfr; (GenBank) bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D PDM29_13990 bfr; (GenBank) bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:sou00130]
D PDM29_06475 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
D PDM29_05840 ubiA; (GenBank) 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PDM29_00130 ubiG; (GenBank) bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D PDM29_11145 ubiH; (GenBank) 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D PDM29_04140 ubiE; (GenBank) bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PDM29_11150 UbiH/UbiF family hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D PDM29_05380 coq7; (GenBank) 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase K06134 coq7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D PDM29_18420 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D PDM29_07750 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D PDM29_11320 wrbA; (GenBank) NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PDM29_05530 hppD; (GenBank) 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:sou00900]
D PDM29_00425 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PDM29_13865 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PDM29_14760 ispD; (GenBank) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PDM29_11365 ispE; (GenBank) 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PDM29_14765 ispF; (GenBank) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D PDM29_15020 ispG; (GenBank) flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PDM29_13245 ispH; (GenBank) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_01230 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D PDM29_12665 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PDM29_13875 uppS; (GenBank) polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:sou00907]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_03325 NAD(P)-dependent oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase
D PDM29_16155 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_18095 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PDM29_03050 tkt; (GenBank) transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:sou00523]
D PDM29_10325 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PDM29_10320 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PDM29_10330 rfbC; (GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PDM29_10335 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:sou01053]
D PDM29_18420 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D PDM29_18410 isochorismatase family protein K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D PDM29_18395 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D PDM29_18415 AMP-binding protein K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D PDM29_18400 amino acid adenylation domain-containing protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01055 Biosynthesis of vancomycin group antibiotics
D PDM29_10320 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:sou00946]
D PDM29_05175 putative glycoside hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_07895 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_09345 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17875 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17900 exo 1,3/1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_18895 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:sou00311]
D PDM29_13985 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D PDM29_02545 blaL2; (GenBank) L2 family class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:sou00332]
D PDM29_00040 proB; (GenBank) glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PDM29_00035 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:sou00261]
D PDM29_15955 thrA; (GenBank) bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D PDM29_12645 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4]
D PDM29_01010 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PDM29_14955 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PDM29_16180 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:sou00521]
D PDM29_03965 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15050 glk; (GenBank) glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_16035 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_09085 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_10305 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PDM29_00165 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PDM29_10325 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PDM29_10320 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PDM29_10330 rfbC; (GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PDM29_10335 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D PDM29_03965 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_15050 glk; (GenBank) glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PDM29_16035 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:sou00525]
D PDM29_10325 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PDM29_10320 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:sou00401]
D PDM29_15365 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PDM29_16000 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_20030 pyridoxal phosphate-dependent aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_07295 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
D PDM29_17915 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
C 00405 Phenazine biosynthesis
D PDM29_05420 trpE; (GenBank) anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PDM29_05415 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PDM29_12090 fabD; (GenBank) ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_12975 mdcH; (GenBank) malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_05920 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_06390 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_12095 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_15870 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PDM29_01395 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D PDM29_06455 acyl carrier protein K02078 acpP; acyl carrier protein
D PDM29_06460 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D PDM29_12100 acpP; (GenBank) acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:sou00999]
D PDM29_10905 metK; (GenBank) methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PDM29_06015 aroE; (GenBank) shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PDM29_05175 putative glycoside hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_07895 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_09345 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17875 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_17900 exo 1,3/1,4-beta-D-glucan glucohydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PDM29_18895 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:sou00362]
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PDM29_07375 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D PDM29_15600 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D PDM29_08330 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D PDM29_11640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00364 Fluorobenzoate degradation [PATH:sou00364]
D PDM29_01080 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:sou00625]
D PDM29_07325 adhP; (GenBank) alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_18245 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:sou00361]
D PDM29_01080 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:sou00623]
D PDM29_01080 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D PDM29_07375 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation [PATH:sou00633]
D PDM29_08050 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D PDM29_18885 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:sou00643]
D PDM29_05525 hmgA; (GenBank) homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D PDM29_10205 maiA; (GenBank) maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D PDM29_10200 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D PDM29_11640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:sou00930]
D PDM29_01775 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D PDM29_07375 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00626 Naphthalene degradation [PATH:sou00626]
D PDM29_07325 adhP; (GenBank) alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_18245 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PDM29_03765 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:sou00984]
D PDM29_15595 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:sou03020]
D PDM29_11460 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PDM29_11465 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PDM29_11615 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PDM29_03180 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:sou03010]
D PDM29_06905 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PDM29_09160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PDM29_06890 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PDM29_09175 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PDM29_06885 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_09180 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_09185 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_15560 rpsA; (GenBank) 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PDM29_13905 rpsB; (GenBank) 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PDM29_11525 rpsC; (GenBank) 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PDM29_11610 rpsD; (GenBank) 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PDM29_11580 rpsE; (GenBank) 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PDM29_20055 rpsF; (GenBank) 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PDM29_11475 rpsG; (GenBank) 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PDM29_11565 rpsH; (GenBank) 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PDM29_05370 rpsI; (GenBank) 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PDM29_11490 rpsJ; (GenBank) 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PDM29_11605 rpsK; (GenBank) 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PDM29_11470 rpsL; (GenBank) 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PDM29_11600 rpsM; (GenBank) 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PDM29_11560 rpsN; (GenBank) 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PDM29_00785 rpsO; (GenBank) 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PDM29_13420 rpsP; (GenBank) 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PDM29_11540 rpsQ; (GenBank) 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PDM29_20050 rpsR; (GenBank) 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PDM29_11515 rpsS; (GenBank) 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PDM29_13220 rpsT; (GenBank) 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PDM29_09325 rpsU; (GenBank) 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PDM29_13660 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31/Thx
D PDM29_11445 rplA; (GenBank) 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PDM29_11510 rplB; (GenBank) 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PDM29_11495 rplC; (GenBank) 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PDM29_11500 rplD; (GenBank) 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PDM29_11555 rplE; (GenBank) 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PDM29_11570 rplF; (GenBank) 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PDM29_20045 rplI; (GenBank) 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PDM29_11450 rplJ; (GenBank) 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PDM29_11440 rplK; (GenBank) 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PDM29_11455 rplL; (GenBank) 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PDM29_05375 rplM; (GenBank) 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PDM29_11545 rplN; (GenBank) 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PDM29_11590 rplO; (GenBank) 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PDM29_11530 rplP; (GenBank) 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PDM29_11620 rplQ; (GenBank) 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PDM29_11575 rplR; (GenBank) 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PDM29_13435 rplS; (GenBank) 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PDM29_00740 rplT; (GenBank) 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PDM29_13205 rplU; (GenBank) 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PDM29_11520 rplV; (GenBank) 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PDM29_11505 rplW; (GenBank) 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PDM29_11550 rplX; (GenBank) 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PDM29_11380 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D PDM29_13210 rpmA; (GenBank) 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PDM29_06595 rpmB; (GenBank) 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PDM29_11535 rpmC; (GenBank) 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PDM29_11585 rpmD; (GenBank) 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PDM29_03155 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PDM29_12075 rpmF; (GenBank) 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PDM29_06590 rpmG; (GenBank) 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PDM29_07155 rpmH; (GenBank) 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PDM29_00745 rpmI; (GenBank) 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PDM29_15550 ykgO; (GenBank) type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:sou00970]
D PDM29_00255 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_06900 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_09165 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19065 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19075 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19085 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_05845 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_11860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_14905 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_14910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_14915 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_15820 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_01285 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PDM29_14490 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PDM29_19285 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PDM29_11920 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PDM29_11925 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PDM29_11930 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PDM29_14585 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PDM29_05365 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PDM29_11370 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PDM29_14975 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19070 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19080 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19090 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19100 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_02865 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_11410 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_14555 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_14575 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_14580 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_11865 tRNA-His K14226 tRNA-His; tRNA His
D PDM29_06895 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PDM29_09170 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PDM29_00910 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_11885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14655 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_19115 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_19170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_02425 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PDM29_11870 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PDM29_11875 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PDM29_00825 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_00835 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_04585 tRNA-Ile K14230 tRNA-Met; tRNA Met
D PDM29_05360 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_19280 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_00390 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PDM29_00715 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_11855 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_20645 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_20650 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_11970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_12015 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_14885 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_19815 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_08790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PDM29_11415 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PDM29_13280 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PDM29_11425 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PDM29_11405 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PDM29_11915 tRNA-Val K14237 tRNA-Val; tRNA Val
D PDM29_12135 tRNA-Val K14237 tRNA-Val; tRNA Val
D PDM29_14505 tRNA-Val K14237 tRNA-Val; tRNA Val
D PDM29_13615 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PDM29_11185 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PDM29_14875 alaS; (GenBank) alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PDM29_02520 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PDM29_20075 asnS; (GenBank) asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PDM29_06825 glyQ; (GenBank) glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PDM29_06820 glyS; (GenBank) glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PDM29_00755 thrS; (GenBank) threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PDM29_19830 serS; (GenBank) serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PDM29_00085 cysS; (GenBank) cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PDM29_01510 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PDM29_04650 fmt; (GenBank) methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PDM29_10450 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PDM29_01315 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PDM29_13235 ileS; (GenBank) isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PDM29_16225 lysS; (GenBank) lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PDM29_09020 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PDM29_10425 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PDM29_15975 hisS; (GenBank) histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PDM29_00735 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PDM29_00730 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PDM29_09155 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PDM29_08840 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes [PATH:sou03008]
D PDM29_01740 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PDM29_19510 orn; (GenBank) oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PDM29_03755 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:sou03060]
D PDM29_11595 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PDM29_11430 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PDM29_00915 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PDM29_15425 secD; (GenBank) protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PDM29_15430 secF; (GenBank) protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D PDM29_15420 yajC; (GenBank) preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PDM29_07145 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PDM29_10825 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PDM29_07995 secB; (GenBank) protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D PDM29_13405 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PDM29_11995 ffs; (GenBank) signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
D PDM29_15130 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PDM29_06855 tatA; (GenBank) Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D PDM29_06850 tatB; (GenBank) Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D PDM29_06845 tatC; (GenBank) twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D PDM29_01750 lepB; (GenBank) signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PDM29_08465 lepB; (GenBank) signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PDM29_13240 lspA; (GenBank) signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:sou04122]
D PDM29_14180 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PDM29_16720 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PDM29_17785 moaA; (GenBank) GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PDM29_17800 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D PDM29_15645 moeB; (GenBank) molybdopterin-synthase adenylyltransferase MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D PDM29_17805 ThiF family adenylyltransferase K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D PDM29_17790 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PDM29_02875 thiS; (GenBank) sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:sou03018]
D PDM29_05355 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PDM29_20475 rne; (GenBank) ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PDM29_05150 rhlB; (GenBank) ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D PDM29_14750 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PDM29_00780 pnp; (GenBank) polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PDM29_10195 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PDM29_14045 rnr; (GenBank) ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PDM29_13705 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PDM29_02380 recQ; (GenBank) DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PDM29_05160 rho; (GenBank) transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PDM29_15350 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D PDM29_04820 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PDM29_14840 hfq; (GenBank) RNA chaperone Hfq K03666 hfq; host factor-I protein
D PDM29_11810 ppk1; (GenBank) polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PDM29_11335 ppk2; (GenBank) polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PDM29_14980 pcnB; (GenBank) polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:sou03030]
D PDM29_11960 dnaQ; (GenBank) DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PDM29_13825 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PDM29_12020 dnaX; (GenBank) DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PDM29_12125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PDM29_01305 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PDM29_10455 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PDM29_07170 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PDM29_20290 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PDM29_09310 dnaG; (GenBank) DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PDM29_20965 dnaG; (GenBank) DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PDM29_12760 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PDM29_11955 rnhA; (GenBank) ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PDM29_13830 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PDM29_06515 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PDM29_20025 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:sou03410]
D PDM29_14160 nth; (GenBank) endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PDM29_05130 ung; (GenBank) uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PDM29_15125 mutY; (GenBank) A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PDM29_17020 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PDM29_07495 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PDM29_13115 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PDM29_13675 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PDM29_12300 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PDM29_04305 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PDM29_06675 xth; (GenBank) exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D PDM29_09130 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D PDM29_06515 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PDM29_16205 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PDM29_20025 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:sou03420]
D PDM29_13580 mfd; (GenBank) transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PDM29_13200 uvrA; (GenBank) excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D PDM29_17535 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D PDM29_14500 uvrB; (GenBank) excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D PDM29_14545 uvrC; (GenBank) excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D PDM29_06575 uvrD; (GenBank) DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PDM29_17315 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PDM29_06515 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PDM29_20025 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:sou03430]
D PDM29_13465 mutS; (GenBank) DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PDM29_00200 mutL; (GenBank) DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D PDM29_06575 uvrD; (GenBank) DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PDM29_17315 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PDM29_20115 sbcB; (GenBank) exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D PDM29_00225 xseA; (GenBank) exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PDM29_01225 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PDM29_16205 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PDM29_12760 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PDM29_13825 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PDM29_07170 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PDM29_12020 dnaX; (GenBank) DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PDM29_01305 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PDM29_12125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PDM29_11960 dnaQ; (GenBank) DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PDM29_10455 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PDM29_20025 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:sou03440]
D PDM29_16205 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PDM29_12760 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PDM29_07175 recF; (GenBank) DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D PDM29_01730 recO; (GenBank) DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PDM29_12030 recR; (GenBank) recombination mediator RecR K06187 recR; recombination protein RecR
D PDM29_14865 recA; (GenBank) recombinase RecA K03553 recA; recombination protein RecA
D PDM29_06515 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PDM29_02490 ruvA; (GenBank) Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PDM29_02480 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PDM29_02495 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PDM29_03165 recG; (GenBank) ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PDM29_07030 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PDM29_07035 recC; (GenBank) exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PDM29_07025 recD; (GenBank) exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PDM29_13825 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PDM29_07170 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PDM29_12020 dnaX; (GenBank) DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PDM29_01305 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PDM29_12125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PDM29_11960 dnaQ; (GenBank) DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PDM29_10455 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PDM29_04735 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:sou03450]
D PDM29_17010 Ku protein K10979 ku; DNA end-binding protein Ku
D PDM29_17015 ligD; (GenBank) DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
D PDM29_19420 T3/T7 RNA polymerase K21313 1; Autographiviridae RNA polymerase [EC:2.7.7.6]
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
D PDM29_06060 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:sou02010]
D PDM29_16275 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PDM29_16285 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D PDM29_16280 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PDM29_17845 modA; (GenBank) molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D PDM29_17840 modB; (GenBank) molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D PDM29_17835 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PDM29_03615 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D PDM29_14285 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D PDM29_14300 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D PDM29_14295 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein
D PDM29_14290 potA; (GenBank) polyamine ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D PDM29_15060 ugpC; (GenBank) sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PDM29_07055 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D PDM29_07050 mlaD; (GenBank) outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PDM29_10400 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PDM29_07045 MlaE family lipid ABC transporter permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PDM29_10410 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PDM29_07060 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D PDM29_07040 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PDM29_10405 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PDM29_14145 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PDM29_14150 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PDM29_14140 pstC; (GenBank) phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D PDM29_14135 pstA; (GenBank) phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D PDM29_14130 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PDM29_04465 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D PDM29_04245 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D PDM29_04250 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D PDM29_10245 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D PDM29_10250 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D PDM29_06100 ABC transporter permease K09696 natB; sodium transport system permease protein
D PDM29_06105 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D PDM29_15105 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E_F; lipoprotein-releasing system permease protein
D PDM29_15110 lolD; (GenBank) lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PDM29_20580 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D PDM29_20575 ccmC; (GenBank) heme ABC transporter permease CcmC K02195 ccmC; heme exporter protein C
D PDM29_20570 ccmB; (GenBank) heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D PDM29_20565 ccmA; (GenBank) heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D PDM29_10465 lptF; (GenBank) LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D PDM29_10470 lptG; (GenBank) LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D PDM29_12390 lptB; (GenBank) LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PDM29_05140 ftsX; (GenBank) permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D PDM29_05145 ftsE; (GenBank) cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PDM29_14525 msbA; (GenBank) lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PDM29_14440 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D PDM29_13755 smrA; (GenBank) multidrug efflux ABC transporter SmrA K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D PDM29_20620 cydC; (GenBank) thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D PDM29_20625 cydD; (GenBank) thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D PDM29_14065 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:sou02060]
D PDM29_12350 ptsP; (GenBank) phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PDM29_12355 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D PDM29_12360 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PDM29_12375 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:sou03070]
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_14445 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D PDM29_14440 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D PDM29_01380 hypothetical protein K03221 yscF; type III secretion protein F
D PDM29_01480 EscV/YscV/HrcV family type III secretion system export apparatus protein K03230 yscV; type III secretion protein V
D PDM29_01455 sctQ; (GenBank) type III secretion system cytoplasmic ring protein SctQ K03225 yscQ; type III secretion protein Q
D PDM29_10600 gspD; (GenBank) type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D PDM29_10555 type II secretion system F family protein K02455 gspF; general secretion pathway protein F
D PDM29_10560 gspG; (GenBank) type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G
D PDM29_10565 GspH/FimT family pseudopilin K02457 gspH; general secretion pathway protein H
D PDM29_10570 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I
D PDM29_10575 type II secretion system protein J K02459 gspJ; general secretion pathway protein J
D PDM29_10580 type II secretion system protein GspK K02460 gspK; general secretion pathway protein K
D PDM29_10585 PilN domain-containing protein K02461 gspL; general secretion pathway protein L
D PDM29_10590 gspM; (GenBank) type II secretion system protein GspM K02462 gspM; general secretion pathway protein M
D PDM29_06830 GspE/PulE family protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PDM29_10550 gspE; (GenBank) type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PDM29_15425 secD; (GenBank) protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PDM29_15430 secF; (GenBank) protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D PDM29_11430 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PDM29_00915 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PDM29_11595 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PDM29_15420 yajC; (GenBank) preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PDM29_07145 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PDM29_10825 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PDM29_15130 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PDM29_07995 secB; (GenBank) protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D PDM29_13405 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PDM29_06855 tatA; (GenBank) Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D PDM29_06850 tatB; (GenBank) Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D PDM29_06845 tatC; (GenBank) twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D PDM29_19665 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1
D PDM29_19660 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2
D PDM29_19655 VirB3 family type IV secretion system protein K03198 virB3; type IV secretion system protein VirB3
D PDM29_20795 VirB3 family type IV secretion system protein K03198 virB3; type IV secretion system protein VirB3
D PDM29_20785 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D PDM29_19680 TrbG/VirB9 family P-type conjugative transfer protein K03204 virB9; type IV secretion system protein VirB9
D PDM29_20765 TrbG/VirB9 family P-type conjugative transfer protein K03204 virB9; type IV secretion system protein VirB9
D PDM29_19565 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D PDM29_19640 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D PDM29_20775 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D PDM29_19685 VirB8/TrbF family protein K03203 virB8; type IV secretion system protein VirB8
D PDM29_20770 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8
D PDM29_19675 secretion protein K03195 virB10; type IV secretion system protein VirB10
D PDM29_20760 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D PDM29_19650 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D PDM29_20790 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D PDM29_19670 virB11; (GenBank) P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D PDM29_20755 virB11; (GenBank) P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D PDM29_19695 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D PDM29_20750 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D PDM29_20800
D PDM29_20845
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:sou02020]
D PDM29_11815 phoR; (GenBank) phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PDM29_11820 phoB; (GenBank) phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PDM29_01215 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D PDM29_14145 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PDM29_14150 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PDM29_08760 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PDM29_08755 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PDM29_07465 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D PDM29_18755 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D PDM29_01760 DegQ family serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D PDM29_13600 creC; (GenBank) two-component system sensor histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D PDM29_13595 creB; (GenBank) two-component system response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D PDM29_04795 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D PDM29_05260 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D PDM29_04800 MdtB/MuxB family multidrug efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump
D PDM29_05265 efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump
D PDM29_04805 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump
D PDM29_05270 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump
D PDM29_16590 flagellin K02406 fliC; flagellin
D PDM29_16595 flagellin K02406 fliC; flagellin
D PDM29_16600 flagellin K02406 fliC; flagellin
D PDM29_16605 flagellin K02406 fliC; flagellin
D PDM29_16445 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D PDM29_10000 motA; (GenBank) flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D PDM29_16425 flagellar motor protein K02556 motA; chemotaxis protein MotA
D PDM29_09095 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PDM29_09090 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PDM29_09110 kdpA; (GenBank) potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D PDM29_09105 kdpB; (GenBank) potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D PDM29_09100 kdpC; (GenBank) potassium-transporting ATPase subunit KdpC K01548 kdpC; potassium-transporting ATPase KdpC subunit
D PDM29_03620 sensor histidine kinase N-terminal domain-containing protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D PDM29_03625 response regulator transcription factor K07774 tctD; two-component system, OmpR family, response regulator TctD
D PDM29_09280 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PDM29_07160 dnaA; (GenBank) chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PDM29_01530 mprF; (GenBank) bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D PDM29_09410 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PDM29_13125 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PDM29_04495 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D PDM29_04490 LytTR family DNA-binding domain-containing protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D PDM29_06105 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D PDM29_06100 ABC transporter permease K09696 natB; sodium transport system permease protein
D PDM29_08065 response regulator K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PDM29_08075 response regulator K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PDM29_08060 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PDM29_08305 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PDM29_16815 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PDM29_15030 response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PDM29_14880 csrA; (GenBank) carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D PDM29_08310 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PDM29_02225 serine hydrolase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D PDM29_13920 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PDM29_13935 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PDM29_13910 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_13930 molecular chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_18775 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D PDM29_18790 cpaB; (GenBank) Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D PDM29_18795 type II and III secretion system protein family protein K02280 cpaC; pilus assembly protein CpaC
D PDM29_18800 fimbrial protein K02282 cpaE; pilus assembly protein CpaE
D PDM29_18805 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PDM29_18810 type II secretion system F family protein K12510 tadB; tight adherence protein B
D PDM29_18815 type II secretion system F family protein K12511 tadC; tight adherence protein C
D PDM29_18820 tetratricopeptide repeat protein K27079 tadD; tight adherence protein D
D PDM29_18830 TadG family pilus assembly protein K27080 tadG; tight adherence protein G
D PDM29_13945 [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D PDM29_05685 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D PDM29_07790 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D PDM29_07935 ATP-binding protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PDM29_07940 ntrC; (GenBank) nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PDM29_07785 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_14280 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_05835 TIGR00366 family protein K02106 atoE; short-chain fatty acids transporter
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_03570 dicarboxylate/amino acid:cation symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D PDM29_02700 HAMP domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D PDM29_02705 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D PDM29_12385 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D PDM29_16560 rpoN; (GenBank) RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D PDM29_02810 pilin K02650 pilA; type IV pilus assembly protein PilA
D PDM29_02820 pilin K02650 pilA; type IV pilus assembly protein PilA
D PDM29_04675 GYF domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D PDM29_16350 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PDM29_19535 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PDM29_00250 Cache 3/Cache 2 fusion domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_01955 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_04860 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_06315 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16355 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16360 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16390 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16710 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_19435 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16370 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PDM29_16410 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PDM29_16395 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16400 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16440 cheY; (GenBank) chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_19530 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_16665 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PDM29_02295 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D PDM29_02300 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D PDM29_02290 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PDM29_02310 response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D PDM29_01990 pilH; (GenBank) twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02305 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02285 chemotaxis protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D PDM29_02280 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC
D PDM29_07840 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D PDM29_07380 TRAP transporter substrate-binding protein K11688 dctP; TRAP-type transport system periplasmic protein
D PDM29_07385 TRAP transporter small permease K11689 dctQ; TRAP-type transport system small permease protein
D PDM29_07390 TRAP transporter large permease K11690 dctM; TRAP-type transport system large permease protein
D PDM29_16550 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PDM29_16235 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D PDM29_16230 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D PDM29_05390 crp; (GenBank) cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PDM29_16240 crotonase/enoyl-CoA hydratase family protein K13816 rpfF; DSF synthase
D PDM29_15015 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D PDM29_15010 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D PDM29_14365 petA; (GenBank) ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PDM29_14370 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PDM29_14375 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PDM29_08315 cytochrome C K08738 CYC; cytochrome c
D PDM29_06485 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PDM29_20630 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PDM29_06480 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PDM29_20635 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PDM29_20640 cydX; (GenBank) cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_03395 FecR domain-containing protein K07165 fecR; transmembrane sensor
D PDM29_12935 FecR domain-containing protein K07165 fecR; transmembrane sensor
D PDM29_16675 flgM; (GenBank) flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome [PATH:sou04142]
D PDM29_03975 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PDM29_16080 glycoside hydrolase family 2 protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
D PDM29_16040 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444 AGA; N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
D PDM29_18715 formylglycine-generating enzyme family protein K13444 SUMF1; formylglycine-generating enzyme [EC:1.8.3.7]
C 04146 Peroxisome [PATH:sou04146]
D PDM29_16245 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D PDM29_05310 nudC; (GenBank) NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D PDM29_05235 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PDM29_16155 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_18095 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PDM29_01920 catalase K03781 katE; catalase [EC:1.11.1.6]
D PDM29_08915 catalase family peroxidase K03781 katE; catalase [EC:1.11.1.6]
D PDM29_07945 superoxide dismutase family protein K04565 SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
D PDM29_07950 superoxide dismutase family protein K04565 SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
D PDM29_14420 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
D PDM29_20430 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:sou04148]
D PDM29_08815 rocF; (GenBank) arginase K01476 rocF; arginase [EC:3.5.3.1]
D PDM29_14365 petA; (GenBank) ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:sou02024]
D PDM29_14840 hfq; (GenBank) RNA chaperone Hfq K03666 hfq; host factor-I protein
D PDM29_05420 trpE; (GenBank) anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PDM29_05415 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PDM29_04810 aroG; (GenBank) 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PDM29_11630 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PDM29_09090 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PDM29_16240 crotonase/enoyl-CoA hydratase family protein K13816 rpfF; DSF synthase
D PDM29_16245 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D PDM29_16235 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D PDM29_16230 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D PDM29_05390 crp; (GenBank) cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PDM29_12745 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PDM29_13620 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PDM29_04605 ribA; (GenBank) GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D PDM29_10650 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PDM29_04160 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14005 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14060 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_16960 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_07145 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PDM29_10545 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_11305 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_18265 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_11430 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PDM29_00915 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PDM29_11595 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PDM29_15420 yajC; (GenBank) preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PDM29_10825 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PDM29_15130 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PDM29_07995 secB; (GenBank) protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D PDM29_13405 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PDM29_08285 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:sou02030]
D PDM29_00250 Cache 3/Cache 2 fusion domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_01955 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_04860 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_06315 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16355 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16360 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16390 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16710 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_19435 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16395 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16370 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PDM29_16410 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PDM29_16400 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16440 cheY; (GenBank) chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16435 protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D PDM29_16340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_19530 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_16665 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PDM29_16345 cheD; (GenBank) chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D PDM29_16350 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PDM29_19535 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PDM29_16530 fliG; (GenBank) flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D PDM29_16500 fliM; (GenBank) flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D PDM29_16495 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PDM29_10000 motA; (GenBank) flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D PDM29_16425 flagellar motor protein K02556 motA; chemotaxis protein MotA
D PDM29_09995 motB; (GenBank) flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PDM29_16420 motD; (GenBank) flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:sou02040]
D PDM29_16540 fliE; (GenBank) flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D PDM29_16535 fliF; (GenBank) flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D PDM29_16530 fliG; (GenBank) flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D PDM29_16525 FliH/SctL family protein K02411 fliH; flagellar assembly protein FliH
D PDM29_16520 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PDM29_16515 fliJ; (GenBank) flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D PDM29_16510 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D PDM29_16505 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D PDM29_16500 fliM; (GenBank) flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D PDM29_16495 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PDM29_16490 fliO; (GenBank) flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D PDM29_16485 fliP; (GenBank) flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D PDM29_16480 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PDM29_16475 fliR; (GenBank) flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D PDM29_16460 flhA; (GenBank) flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PDM29_16465 flhB; (GenBank) flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PDM29_16670 flgA; (GenBank) flagellar basal body P-ring formation chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D PDM29_16660 flgB; (GenBank) flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D PDM29_16655 flgC; (GenBank) flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D PDM29_16650 flgD; (GenBank) flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D PDM29_16645 flgE; (GenBank) flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D PDM29_16640 flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D PDM29_16635 flgG; (GenBank) flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D PDM29_16630 flgH; (GenBank) flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D PDM29_16625 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D PDM29_16620 flgJ; (GenBank) flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D PDM29_16615 flgK; (GenBank) flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D PDM29_16610 flgL; (GenBank) flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D PDM29_16590 flagellin K02406 fliC; flagellin
D PDM29_16595 flagellin K02406 fliC; flagellin
D PDM29_16600 flagellin K02406 fliC; flagellin
D PDM29_16605 flagellin K02406 fliC; flagellin
D PDM29_16585 fliD; (GenBank) flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D PDM29_16580 fliS; (GenBank) flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D PDM29_10000 motA; (GenBank) flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D PDM29_16425 flagellar motor protein K02556 motA; chemotaxis protein MotA
D PDM29_09995 motB; (GenBank) flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PDM29_16420 motD; (GenBank) flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D PDM29_16675 flgM; (GenBank) flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PDM29_04590 rpoD; (GenBank) RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D PDM29_16550 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PDM29_12385 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D PDM29_16560 rpoN; (GenBank) RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D PDM29_16445 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PDM29_14750 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:sou04981]
D PDM29_03255 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D PDM29_11070 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PDM29_10640 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PDM29_11065 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PDM29_20175 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_20180 metH; (GenBank) methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04980 Cobalamin transport and metabolism [PATH:sou04980]
D PDM29_11135 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PDM29_20175 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PDM29_20180 metH; (GenBank) methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation
D PDM29_06430 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D PDM29_19895 hutH; (GenBank) histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells [PATH:sou05100]
D PDM29_01425 sctE; (GenBank) type III secretion system translocon subunit SctE K13285 sipB; invasin B
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:sou01501]
D PDM29_09135 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D PDM29_01710 nagZ; (GenBank) beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PDM29_02550 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D PDM29_02225 serine hydrolase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D PDM29_03035 TonB family protein K02172 blaR1; bla regulator protein blaR1
D PDM29_07630 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D PDM29_03040 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PDM29_13525 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PDM29_02545 blaL2; (GenBank) L2 family class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D PDM29_02945 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_04170 smeD; (GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_08270 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_15510 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_16950 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_17035 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_20150 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_02940 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_04165 smeE; (GenBank) multidrug efflux RND transporter permease subunit SmeE K18138 acrB; multidrug efflux pump
D PDM29_08275 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_15515 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_16955 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_20155 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_04160 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14005 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14060 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_16960 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_03115 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PDM29_04100 mrdA; (GenBank) penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PDM29_10755 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:sou01502]
D PDM29_09410 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PDM29_10790 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_13645 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_10030 alr; (GenBank) alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PDM29_10765 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PDM29_10770 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PDM29_10780 murG; (GenBank) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PDM29_13125 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:sou01503]
D PDM29_08760 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PDM29_08755 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PDM29_17030 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D PDM29_00205 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PDM29_01760 DegQ family serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D PDM29_03880 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PDM29_03885 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PDM29_02945 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_04170 smeD; (GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_08270 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_15510 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_16950 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_17035 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_20150 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_02940 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_04165 smeE; (GenBank) multidrug efflux RND transporter permease subunit SmeE K18138 acrB; multidrug efflux pump
D PDM29_08275 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_15515 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_16955 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_20155 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_13840 lpxA; (GenBank) acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PDM29_01530 mprF; (GenBank) bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:sou01000]
C 01001 Protein kinases [BR:sou01001]
D PDM29_03755 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D PDM29_07505 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PDM29_09795 winged helix-turn-helix domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PDM29_01810 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_01960 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_07705 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_08110 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_14560 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_14620 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_15770 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_04545 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D PDM29_11815 phoR; (GenBank) phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PDM29_08760 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PDM29_13600 creC; (GenBank) two-component system sensor histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D PDM29_09095 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PDM29_03620 sensor histidine kinase N-terminal domain-containing protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D PDM29_08065 response regulator K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PDM29_08075 response regulator K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PDM29_08310 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PDM29_04495 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D PDM29_08970 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D PDM29_07935 ATP-binding protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PDM29_02700 HAMP domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D PDM29_16685 ATP-binding protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D PDM29_16395 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_02290 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PDM29_07840 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D PDM29_16235 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D PDM29_15015 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:sou01009]
D PDM29_10880 ahcY; (GenBank) adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D PDM29_11965 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:sou01002]
D PDM29_13240 lspA; (GenBank) signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PDM29_02830 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PDM29_18780 A24 family peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D PDM29_06835 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PDM29_08125 hypothetical protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PDM29_15665 guaA; (GenBank) glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PDM29_11765 purF; (GenBank) amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PDM29_07595 gltB; (GenBank) glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PDM29_03950 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PDM29_04340 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PDM29_13975 asnB; (GenBank) asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PDM29_20300 asnB; (GenBank) asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PDM29_05750 type II CAAX endopeptidase family protein K07052 K07052; CAAX protease family protein
D PDM29_06140 type II CAAX endopeptidase family protein K07052 K07052; CAAX protease family protein
D PDM29_07185 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D PDM29_01845 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D PDM29_04275 M3 family metallopeptidase K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D PDM29_08425 dcp; (GenBank) peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D PDM29_20385 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D PDM29_01120 peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PDM29_01125 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PDM29_02600 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PDM29_09955 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PDM29_13570 peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PDM29_13125 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PDM29_09410 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PDM29_08345 pitrilysin family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D PDM29_08920 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PDM29_10460 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PDM29_07110 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PDM29_13970 dapE; (GenBank) succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PDM29_03750 M23 family metallopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D PDM29_04905 M23 family metallopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D PDM29_13940 map; (GenBank) type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PDM29_19015 map; (GenBank) type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PDM29_03225 pepQ; (GenBank) Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D PDM29_03230 aminopeptidase P N-terminal domain-containing protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PDM29_14815 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PDM29_00170 htpX; (GenBank) protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D PDM29_13860 rseP; (GenBank) RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D PDM29_03035 TonB family protein K02172 blaR1; bla regulator protein blaR1
D PDM29_07630 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D PDM29_11780 zinc-dependent metalloprotease K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D PDM29_08765 zinc-dependent peptidase K09933 mtfA; MtfA peptidase
D PDM29_01760 DegQ family serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D PDM29_08950 Do family serine endopeptidase K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D PDM29_10545 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_11305 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_18265 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_04220 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D PDM29_06060 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D PDM29_04210 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D PDM29_04080 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D PDM29_11895 clpP; (GenBank) ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PDM29_11905 lon; (GenBank) endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PDM29_14860 lexA; (GenBank) transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PDM29_01750 lepB; (GenBank) signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PDM29_08465 lepB; (GenBank) signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PDM29_11230 pip; (GenBank) prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PDM29_08220 lysophospholipase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
D PDM29_04055 carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PDM29_09205 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PDM29_13985 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D PDM29_04715 sppA; (GenBank) signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D PDM29_01135 rhomboid family intramembrane serine protease K07059 rho2; rhomboid family protease [EC:3.4.21.105]
D PDM29_04185 hslV; (GenBank) ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D PDM29_11400 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D PDM29_03460 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_15165 ggt; (GenBank) gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PDM29_01240 pmbA; (GenBank) metalloprotease PmbA K03592 pmbA; PmbA protein
D PDM29_01250 tldD; (GenBank) metalloprotease TldD K03568 tldD; TldD protein
D PDM29_07690 TldD/PmbA family protein K03568 tldD; TldD protein
D PDM29_07695 TldD/PmbA family protein K03568 tldD; TldD protein
D PDM29_02010 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
D PDM29_01975 protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D PDM29_01980 hflK; (GenBank) FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:sou01003]
D PDM29_02175 mtgA; (GenBank) monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_02005 pbpC; (GenBank) penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D PDM29_02340 mrcB; (GenBank) penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D PDM29_03115 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PDM29_10775 ftsW; (GenBank) putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_04095 rodA; (GenBank) rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_04515 mdoH; (GenBank) glucans biosynthesis glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D PDM29_17415 cyclic beta 1-2 glucan synthetase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D PDM29_00020 pgaC; (GenBank) poly-beta-1,6-N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D PDM29_06600 glycosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D PDM29_02650 otsA; (GenBank) alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:sou01005]
D PDM29_13840 lpxA; (GenBank) acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PDM29_13835 lpxB; (GenBank) lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PDM29_10810 lpxC; (GenBank) UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PDM29_13850 lpxD; (GenBank) UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PDM29_11785 lpxH; (GenBank) UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PDM29_14530 lpxK; (GenBank) tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PDM29_03530 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PDM29_04600 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PDM29_05675 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PDM29_17045 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PDM29_04075 lipid A deacylase LpxR family protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-]
D PDM29_03535 waaA; (GenBank) lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PDM29_17030 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D PDM29_11985 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D PDM29_15815 kdsA; (GenBank) 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PDM29_14535 kdsB; (GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PDM29_12405 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PDM29_12410 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PDM29_04635 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D PDM29_11980 glycosyltransferase family 9 protein K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D PDM29_10260 glycosyltransferase K24658 wbdA; O-antigen biosynthesis alpha-1,2-mannosyltransferase [EC:2.4.1.371 2.4.1.-]
D PDM29_02170 glycosyltransferase family 2 protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:sou01011]
D PDM29_12420 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PDM29_15785 murB; (GenBank) UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PDM29_10785 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PDM29_10760 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PDM29_10790 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_13645 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PDM29_10030 alr; (GenBank) alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PDM29_10770 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PDM29_10780 murG; (GenBank) undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PDM29_07780 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PDM29_11790 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PDM29_13225 murJ; (GenBank) murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D PDM29_03115 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PDM29_02340 mrcB; (GenBank) penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D PDM29_02005 pbpC; (GenBank) penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D PDM29_04100 mrdA; (GenBank) penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PDM29_10755 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PDM29_04080 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D PDM29_02175 mtgA; (GenBank) monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_10775 ftsW; (GenBank) putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_04095 rodA; (GenBank) rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_09410 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PDM29_13125 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PDM29_03750 M23 family metallopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D PDM29_04905 M23 family metallopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D PDM29_03925 transglycosylase SLT domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PDM29_07820 MltA domain-containing protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D PDM29_04090 mltB; (GenBank) lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D PDM29_01045 transglycosylase SLT domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D PDM29_11940 transglycosylase SLT domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D PDM29_12115 mltG; (GenBank) endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D PDM29_04085 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PDM29_00205 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PDM29_07800 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PDM29_07870 hypothetical protein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:sou01004]
D PDM29_12090 fabD; (GenBank) ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_12975 mdcH; (GenBank) malonate decarboxylase subunit epsilon K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PDM29_12080 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PDM29_19610 beta-ketoacyl-ACP synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PDM29_06400 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PDM29_10070 fabB; (GenBank) beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PDM29_06385 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PDM29_12105 fabF; (GenBank) beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PDM29_05920 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_06390 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_12095 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_15870 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PDM29_10075 fabA; (GenBank) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D PDM29_13845 fabZ; (GenBank) 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PDM29_15435 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D PDM29_10995 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D PDM29_13180 tesB; (GenBank) acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D PDM29_07485 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PDM29_18185 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PDM29_13510 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D PDM29_06700 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PDM29_11675 prpE; (GenBank) propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D PDM29_16245 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D PDM29_07555 plsB; (GenBank) glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
C 01008 Polyketide biosynthesis proteins [BR:sou01008]
D PDM29_18410 isochorismatase family protein K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D PDM29_18415 AMP-binding protein K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D PDM29_18400 amino acid adenylation domain-containing protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01006 Prenyltransferases [BR:sou01006]
D PDM29_01230 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D PDM29_12665 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PDM29_13875 uppS; (GenBank) polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PDM29_14835 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PDM29_05840 ubiA; (GenBank) 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PDM29_09285 cyoE; (GenBank) heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:sou01007]
D PDM29_13615 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PDM29_11185 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PDM29_00175 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D PDM29_09155 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PDM29_08840 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PDM29_00085 cysS; (GenBank) cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PDM29_09020 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PDM29_01510 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PDM29_13235 ileS; (GenBank) isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PDM29_10450 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PDM29_01315 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PDM29_16225 lysS; (GenBank) lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PDM29_02520 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PDM29_20075 asnS; (GenBank) asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PDM29_15975 hisS; (GenBank) histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PDM29_06825 glyQ; (GenBank) glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PDM29_06820 glyS; (GenBank) glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PDM29_19830 serS; (GenBank) serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PDM29_10425 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PDM29_00755 thrS; (GenBank) threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PDM29_14875 alaS; (GenBank) alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PDM29_00735 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PDM29_00730 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PDM29_03665 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PDM29_07295 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PDM29_20560 pyridoxal phosphate-dependent aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D PDM29_16000 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_20030 pyridoxal phosphate-dependent aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PDM29_11725 kbl; (GenBank) glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D PDM29_05910 bioF; (GenBank) 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PDM29_14240 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PDM29_03300 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PDM29_02270 bioA; (GenBank) adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PDM29_03290 hemL; (GenBank) glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PDM29_11300 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PDM29_19855 serC; (GenBank) 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:sou00194]
D PDM29_04380 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PDM29_18430 atpC; (GenBank) ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PDM29_04385 atpD; (GenBank) F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PDM29_04390 atpG; (GenBank) F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PDM29_04395 atpA; (GenBank) F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PDM29_04400 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PDM29_04405 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PDM29_04410 atpE; (GenBank) F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PDM29_04415 atpB; (GenBank) F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:sou03000]
D PDM29_00710 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09575 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09745 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_18745 helix-turn-helix domain-containing protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D PDM29_18770 helix-turn-helix domain-containing protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D PDM29_17635 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D PDM29_03435 helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PDM29_13675 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PDM29_08005 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PDM29_13780 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PDM29_17760 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PDM29_11210 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PDM29_13025 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D PDM29_02960 LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PDM29_02550 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D PDM29_17490 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PDM29_18970 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PDM29_00965 LysR family transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
D PDM29_05880 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D PDM29_03955 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_05180 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_07400 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_07890 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_16060 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_17895 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_20515 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PDM29_12830 LacI family DNA-binding transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D PDM29_19880 hutC; (GenBank) histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PDM29_04175 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D PDM29_15680 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PDM29_03515 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PDM29_13500 fabR; (GenBank) HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PDM29_07425 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PDM29_10020 Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PDM29_06990 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PDM29_17275 helix-turn-helix domain-containing protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PDM29_19055 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PDM29_12255 soxR; (GenBank) redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D PDM29_15330 fur; (GenBank) ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PDM29_12745 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PDM29_13620 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PDM29_05390 crp; (GenBank) cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PDM29_15970 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PDM29_16900 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PDM29_07920 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PDM29_17245 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PDM29_08660 short-chain fatty acyl-CoA regulator family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D PDM29_13795 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D PDM29_19520 mntR; (GenBank) manganese-binding transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D PDM29_03040 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PDM29_13525 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PDM29_08775 birA; (GenBank) bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PDM29_05045 fis; (GenBank) DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PDM29_02035 prpR; (GenBank) propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D PDM29_07710 helix-turn-helix transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PDM29_16550 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PDM29_06095 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator
D PDM29_18955 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D PDM29_09235 putA; (GenBank) bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PDM29_03770 metal/formaldehyde-sensitive transcriptional repressor K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D PDM29_20520 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PDM29_06650 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_20695 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_20955 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_15340 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D PDM29_14950 glycine cleavage system protein R K03567 gcvR; glycine cleavage system transcriptional repressor
D PDM29_11205 rnk; (GenBank) nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D PDM29_20090 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D PDM29_12315 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D PDM29_00100 dksA; (GenBank) RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PDM29_10645 nrdR; (GenBank) transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D PDM29_06555 rtcR; (GenBank) RNA repair transcriptional activator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D PDM29_10740 mraZ; (GenBank) division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:sou03021]
D PDM29_11615 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PDM29_11460 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PDM29_11465 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PDM29_03180 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PDM29_04590 rpoD; (GenBank) RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D PDM29_01585 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PDM29_01770 rpoE; (GenBank) RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PDM29_15390 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PDM29_18180 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PDM29_05095 rpoH; (GenBank) RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D PDM29_12385 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D PDM29_16560 rpoN; (GenBank) RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D PDM29_16445 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D PDM29_00805 nusA; (GenBank) transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PDM29_10675 nusB; (GenBank) transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D PDM29_11435 nusG; (GenBank) transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PDM29_14380 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D PDM29_14385 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D PDM29_04545 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D PDM29_04550 STAS domain-containing protein K17762 rsbS; rsbT antagonist protein RsbS
D PDM29_04555 STAS domain-containing protein K17763 rsbR; rsbT co-antagonist protein RsbR
D PDM29_00100 dksA; (GenBank) RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PDM29_16195 greA; (GenBank) transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D PDM29_01055 greB; (GenBank) transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D PDM29_05160 rho; (GenBank) transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PDM29_08190 hypothetical protein K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:sou03019]
D PDM29_20475 rne; (GenBank) ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PDM29_01260 rng; (GenBank) ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D PDM29_01740 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PDM29_14045 rnr; (GenBank) ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PDM29_20435 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D PDM29_19510 orn; (GenBank) oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PDM29_05150 rhlB; (GenBank) ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D PDM29_10195 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PDM29_13705 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PDM29_02380 recQ; (GenBank) DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PDM29_14750 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PDM29_00780 pnp; (GenBank) polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PDM29_05160 rho; (GenBank) transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PDM29_15350 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D PDM29_04820 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PDM29_14840 hfq; (GenBank) RNA chaperone Hfq K03666 hfq; host factor-I protein
D PDM29_11810 ppk1; (GenBank) polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PDM29_11335 ppk2; (GenBank) polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PDM29_14980 pcnB; (GenBank) polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D PDM29_05355 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PDM29_14880 csrA; (GenBank) carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D PDM29_12365 rapZ; (GenBank) RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D PDM29_02370 hrpA; (GenBank) ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D PDM29_06260 hrpB; (GenBank) ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:sou03011]
D PDM29_15560 rpsA; (GenBank) 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PDM29_13905 rpsB; (GenBank) 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PDM29_11525 rpsC; (GenBank) 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PDM29_11610 rpsD; (GenBank) 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PDM29_11580 rpsE; (GenBank) 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PDM29_20055 rpsF; (GenBank) 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PDM29_11475 rpsG; (GenBank) 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PDM29_11565 rpsH; (GenBank) 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PDM29_05370 rpsI; (GenBank) 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PDM29_11490 rpsJ; (GenBank) 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PDM29_11605 rpsK; (GenBank) 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PDM29_11470 rpsL; (GenBank) 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PDM29_11600 rpsM; (GenBank) 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PDM29_11560 rpsN; (GenBank) 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PDM29_00785 rpsO; (GenBank) 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PDM29_13420 rpsP; (GenBank) 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PDM29_11540 rpsQ; (GenBank) 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PDM29_20050 rpsR; (GenBank) 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PDM29_11515 rpsS; (GenBank) 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PDM29_13220 rpsT; (GenBank) 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PDM29_09325 rpsU; (GenBank) 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PDM29_13660 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31/Thx
D PDM29_11445 rplA; (GenBank) 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PDM29_11510 rplB; (GenBank) 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PDM29_11495 rplC; (GenBank) 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PDM29_11500 rplD; (GenBank) 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PDM29_11555 rplE; (GenBank) 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PDM29_11570 rplF; (GenBank) 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PDM29_20045 rplI; (GenBank) 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PDM29_11450 rplJ; (GenBank) 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PDM29_11440 rplK; (GenBank) 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PDM29_11455 rplL; (GenBank) 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PDM29_05375 rplM; (GenBank) 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PDM29_11545 rplN; (GenBank) 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PDM29_11590 rplO; (GenBank) 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PDM29_11530 rplP; (GenBank) 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PDM29_11620 rplQ; (GenBank) 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PDM29_11575 rplR; (GenBank) 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PDM29_13435 rplS; (GenBank) 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PDM29_00740 rplT; (GenBank) 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PDM29_13205 rplU; (GenBank) 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PDM29_11520 rplV; (GenBank) 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PDM29_11505 rplW; (GenBank) 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PDM29_11550 rplX; (GenBank) 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PDM29_13210 rpmA; (GenBank) 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PDM29_06595 rpmB; (GenBank) 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PDM29_11535 rpmC; (GenBank) 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PDM29_11585 rpmD; (GenBank) 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PDM29_03155 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PDM29_12075 rpmF; (GenBank) 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PDM29_06590 rpmG; (GenBank) 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PDM29_07155 rpmH; (GenBank) 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PDM29_00745 rpmI; (GenBank) 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PDM29_15550 ykgO; (GenBank) type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PDM29_11380 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D PDM29_06905 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PDM29_09160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PDM29_06890 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PDM29_09175 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PDM29_06885 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_09180 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_09185 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 03009 Ribosome biogenesis [BR:sou03009]
D PDM29_01740 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PDM29_03755 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D PDM29_19510 orn; (GenBank) oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PDM29_01735 era; (GenBank) GTPase Era K03595 era; GTPase
D PDM29_13215 obgE; (GenBank) GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D PDM29_00100 dksA; (GenBank) RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PDM29_00805 nusA; (GenBank) transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PDM29_10675 nusB; (GenBank) transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D PDM29_11435 nusG; (GenBank) transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PDM29_10060 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PDM29_11110 rsmA; (GenBank) 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PDM29_04645 rsmB; (GenBank) 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PDM29_10055 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PDM29_15145 rsmD; (GenBank) 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PDM29_02275 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PDM29_06660 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PDM29_10745 rsmH; (GenBank) 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PDM29_10710 rsmI; (GenBank) 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PDM29_14055 rlmB; (GenBank) 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PDM29_14810 rlmE; (GenBank) 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PDM29_01290 rlmH; (GenBank) 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PDM29_07115 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PDM29_13590 rlmJ; (GenBank) 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PDM29_14195 rlmKL; (GenBank) bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PDM29_11175 rlmM; (GenBank) 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PDM29_15615 rlmN; (GenBank) 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PDM29_01720 rlmD; (GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PDM29_11665 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PDM29_15455 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PDM29_11715 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PDM29_20540 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PDM29_20470 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PDM29_02665 rluD; (GenBank) 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PDM29_06270 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PDM29_01615 rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D PDM29_13720 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D PDM29_02930 rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D PDM29_10445 rimI; (GenBank) ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PDM29_02855 rimK; (GenBank) 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D PDM29_13425 rimM; (GenBank) ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D PDM29_01065 rimO; (GenBank) 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PDM29_05035 prmA; (GenBank) 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D PDM29_01025 prmB; (GenBank) 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D PDM29_20260 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D PDM29_20475 rne; (GenBank) ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PDM29_01260 rng; (GenBank) ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D PDM29_12320 ruvX; (GenBank) Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PDM29_15480 dbpA; (GenBank) ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D PDM29_13705 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PDM29_03660 rsgA; (GenBank) ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PDM29_15640 der; (GenBank) ribosome biogenesis GTPase Der K03977 engA; GTPase
D PDM29_14845 hflX; (GenBank) GTPase HflX K03665 hflX; GTPase
D PDM29_04690 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PDM29_03175 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PDM29_00795 rbfA; (GenBank) 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D PDM29_00810 rimP; (GenBank) ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D PDM29_13700 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D PDM29_01295 rsfS; (GenBank) ribosome silencing factor K09710 ybeB; ribosome-associated protein
D PDM29_14330 ybeY; (GenBank) rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D PDM29_14805 yhbY; (GenBank) ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D PDM29_01245 ribosome-associated protein K09889 yjgA; ribosome-associated protein
D PDM29_12380 raiA; (GenBank) ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
D PDM29_11390 ychF; (GenBank) redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D PDM29_12070 YceD family protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:sou03016]
D PDM29_20435 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D PDM29_03930 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D PDM29_06285 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PDM29_06545 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PDM29_13615 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PDM29_10425 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PDM29_13235 ileS; (GenBank) isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PDM29_01315 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PDM29_01510 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PDM29_11185 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PDM29_09020 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PDM29_16225 lysS; (GenBank) lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PDM29_02520 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PDM29_14875 alaS; (GenBank) alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PDM29_20075 asnS; (GenBank) asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PDM29_00755 thrS; (GenBank) threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PDM29_19830 serS; (GenBank) serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PDM29_00085 cysS; (GenBank) cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PDM29_10450 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PDM29_15975 hisS; (GenBank) histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PDM29_00735 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PDM29_00730 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PDM29_09155 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PDM29_08840 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PDM29_04595 dtd; (GenBank) D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PDM29_03590 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PDM29_12035 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PDM29_02885 trmB; (GenBank) tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PDM29_01000 truA; (GenBank) tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PDM29_00790 truB; (GenBank) tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PDM29_14770 truD; (GenBank) tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PDM29_04690 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PDM29_14835 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PDM29_07135 mnmE; (GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PDM29_05945 mnmG; (GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PDM29_02260 cysQ; (GenBank) 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PDM29_07150 rnpA; (GenBank) ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PDM29_10725 rnpB; (GenBank) RNase P RNA component class A K01978 rnpB; RNase P catalytic RNA component
D PDM29_14090 rnt; (GenBank) ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PDM29_03195 rph; (GenBank) ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PDM29_00240 rnd; (GenBank) ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PDM29_12740 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D PDM29_10625 ettA; (GenBank) energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D PDM29_06825 glyQ; (GenBank) glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PDM29_06820 glyS; (GenBank) glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PDM29_00175 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D PDM29_10865 ybaK; (GenBank) Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PDM29_19515 tadA; (GenBank) tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PDM29_08745 dusA; (GenBank) tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PDM29_10930 dusB; (GenBank) tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PDM29_14355 miaB; (GenBank) tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D PDM29_17485 class I SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PDM29_13430 trmD; (GenBank) tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PDM29_02930 rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D PDM29_00160 RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D PDM29_08335 trmL; (GenBank) tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PDM29_08405 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D PDM29_11665 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PDM29_15455 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PDM29_16720 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PDM29_07565 ttcA; (GenBank) tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PDM29_20070 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D PDM29_15065 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ
D PDM29_15410 queA; (GenBank) tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PDM29_02430 queC; (GenBank) 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PDM29_10165 queD; (GenBank) 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PDM29_02435 queE; (GenBank) 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PDM29_05250 queF; (GenBank) NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PDM29_00220 queG; (GenBank) tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PDM29_08615 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D PDM29_15415 tgt; (GenBank) tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PDM29_01220 tilS; (GenBank) tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PDM29_02325 tsaB; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PDM29_09330 tsaD; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PDM29_00210 tsaE; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PDM29_20325 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D PDM29_14045 rnr; (GenBank) ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PDM29_00780 pnp; (GenBank) polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:sou03012]
D PDM29_00800 infB; (GenBank) translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PDM29_00750 infC; (GenBank) translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PDM29_02555 ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D PDM29_13900 tsf; (GenBank) translation elongation factor Ts K02357 tsf; elongation factor Ts
D PDM29_11420 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D PDM29_11485 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D PDM29_11480 fusA; (GenBank) elongation factor G K02355 fusA; elongation factor G
D PDM29_16890 fusA; (GenBank) elongation factor G K02355 fusA; elongation factor G
D PDM29_11345 prfA; (GenBank) peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D PDM29_13880 frr; (GenBank) ribosome recycling factor K02838 frr; ribosome recycling factor
D PDM29_11225 prmC; (GenBank) peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PDM29_11385 pth; (GenBank) aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PDM29_16750 infA; (GenBank) translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PDM29_00140 efp; (GenBank) elongation factor P K02356 efp; elongation factor P
D PDM29_16140 yeiP; (GenBank) elongation factor P-like protein YeiP K02356 efp; elongation factor P
D PDM29_20015 epmA; (GenBank) EF-P lysine aminoacylase EpmA K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D PDM29_00145 epmB; (GenBank) EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D PDM29_16220 prfB; (GenBank) peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D PDM29_02150 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D PDM29_08415 arfB; (GenBank) alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:sou03110]
D PDM29_16740 clpA; (GenBank) ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D PDM29_02610 clpB; (GenBank) ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PDM29_11900 clpX; (GenBank) ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PDM29_04180 hslU; (GenBank) ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D PDM29_15350 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D PDM29_06765 molecular chaperone HscC K04045 hscC; molecular chaperone HscC
D PDM29_01565 Hsp70 family protein K04046 yegD; hypothetical chaperone protein
D PDM29_04820 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PDM29_15355 dnaJ; (GenBank) molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PDM29_01995 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein
D PDM29_02180 Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33
D PDM29_15345 grpE; (GenBank) nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D PDM29_13450 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D PDM29_04825 co-chaperone GroES K04078 groES; chaperonin GroES
D PDM29_01760 DegQ family serine endoprotease K04771 degP; serine protease Do [EC:3.4.21.107]
D PDM29_14815 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PDM29_04415 atpB; (GenBank) F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PDM29_13910 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_13930 molecular chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_07995 secB; (GenBank) protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D PDM29_13190 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A
D PDM29_10545 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_11305 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_18265 S8 family peptidase K14645 K14645; serine protease [EC:3.4.21.-]
D PDM29_03975 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PDM29_11655 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D PDM29_11935 peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D PDM29_14690 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D PDM29_20205 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D PDM29_01160 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D PDM29_11120 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D PDM29_05155 trxA; (GenBank) thioredoxin K03671 TXN; thioredoxin
D PDM29_18365 thioredoxin family protein K03671 TXN; thioredoxin
D PDM29_18455 thioredoxin family protein K03671 TXN; thioredoxin
D PDM29_01325 trxA; (GenBank) thioredoxin K05838 ybbN; putative thioredoxin
D PDM29_11835 grxC; (GenBank) glutaredoxin 3 K03676 grxC; glutaredoxin 3
D PDM29_03685 grxD; (GenBank) Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D PDM29_14425 grxD; (GenBank) Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D PDM29_03880 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PDM29_03885 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PDM29_11625 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D PDM29_10490 thioredoxin fold domain-containing protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PDM29_20595 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D PDM29_19045 dsbG; (GenBank) thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
C 04131 Membrane trafficking [BR:sou04131]
D PDM29_15610 ndk; (GenBank) nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_03010 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PDM29_13565 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PDM29_02985 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:sou03051]
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:sou03032]
D PDM29_11955 rnhA; (GenBank) ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PDM29_00710 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09575 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09745 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_11910 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PDM29_00725 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D PDM29_15565 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D PDM29_07160 dnaA; (GenBank) chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PDM29_20290 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PDM29_09310 dnaG; (GenBank) DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PDM29_20965 dnaG; (GenBank) DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PDM29_12760 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PDM29_13825 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PDM29_07170 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PDM29_10455 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PDM29_01305 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PDM29_12125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PDM29_11960 dnaQ; (GenBank) DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PDM29_12020 dnaX; (GenBank) DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PDM29_13830 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PDM29_06515 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PDM29_20025 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PDM29_12470 hda; (GenBank) DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D PDM29_20000 gyrA; (GenBank) DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PDM29_07180 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PDM29_13995 parC; (GenBank) DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PDM29_14735 parE; (GenBank) DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PDM29_04685 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PDM29_07605 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:sou03036]
D PDM29_00710 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09575 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09745 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_01740 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_05725 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D PDM29_20920 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D PDM29_11910 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PDM29_00725 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D PDM29_15565 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D PDM29_01995 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein
D PDM29_07160 dnaA; (GenBank) chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PDM29_00360 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D PDM29_02375 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D PDM29_05045 fis; (GenBank) DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PDM29_14840 hfq; (GenBank) RNA chaperone Hfq K03666 hfq; host factor-I protein
D PDM29_13025 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D PDM29_07425 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PDM29_10020 Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PDM29_20040 smc; (GenBank) chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D PDM29_20530 ScpA family protein K05896 scpA; segregation and condensation protein A
D PDM29_10800 ftsA; (GenBank) cell division protein FtsA K03590 ftsA; cell division protein FtsA
D PDM29_14755 ftsB; (GenBank) cell division protein FtsB K05589 ftsB; cell division protein FtsB
D PDM29_05145 ftsE; (GenBank) cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PDM29_10755 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PDM29_16775 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D PDM29_10750 ftsL; (GenBank) cell division protein FtsL K03586 ftsL; cell division protein FtsL
D PDM29_10795 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ
D PDM29_10775 ftsW; (GenBank) putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_05140 ftsX; (GenBank) permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D PDM29_10805 ftsZ; (GenBank) cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PDM29_20035 zipA; (GenBank) cell division protein ZipA K03528 zipA; cell division protein ZipA
D PDM29_03245 cell division protein ZapA K09888 zapA; cell division protein ZapA
D PDM29_03240 TIGR02449 family protein K09892 zapB; cell division protein ZapB
D PDM29_08555 zapE; (GenBank) cell division protein ZapE K06916 zapE; cell division protein ZapE
D PDM29_00205 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PDM29_02945 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_04170 smeD; (GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_08270 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_15510 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_16950 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_17035 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_20150 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_13085 minC; (GenBank) septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D PDM29_13080 minD; (GenBank) septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D PDM29_13075 minE; (GenBank) cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D PDM29_04115 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PDM29_04110 mreC; (GenBank) rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D PDM29_04105 mreD; (GenBank) rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D PDM29_04095 rodA; (GenBank) rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_06655 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_07730 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_16415 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_20690 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_06650 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_20695 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_20955 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_13995 parC; (GenBank) DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PDM29_14735 parE; (GenBank) DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PDM29_05945 mnmG; (GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PDM29_06660 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PDM29_04190 xerC; (GenBank) tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D PDM29_10480 xerD; (GenBank) site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D PDM29_01100 apbC; (GenBank) iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PDM29_07620 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D PDM29_03870 yihA; (GenBank) ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:sou03400]
D PDM29_13670 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PDM29_15200 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PDM29_05130 ung; (GenBank) uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PDM29_17020 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PDM29_15125 mutY; (GenBank) A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PDM29_14160 nth; (GenBank) endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PDM29_03020 S1/P1 nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D PDM29_10840 Nudix family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PDM29_19480 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PDM29_09080 dut; (GenBank) dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PDM29_04305 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PDM29_13115 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PDM29_13675 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PDM29_12300 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PDM29_07495 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PDM29_06675 xth; (GenBank) exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D PDM29_09130 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D PDM29_16205 recJ; (GenBank) single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PDM29_20025 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PDM29_06515 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PDM29_13200 uvrA; (GenBank) excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D PDM29_17535 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D PDM29_14500 uvrB; (GenBank) excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D PDM29_14545 uvrC; (GenBank) excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D PDM29_06575 uvrD; (GenBank) DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PDM29_17315 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PDM29_11460 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PDM29_11465 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PDM29_11615 rpoA; (GenBank) DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PDM29_03180 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PDM29_13580 mfd; (GenBank) transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PDM29_13465 mutS; (GenBank) DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PDM29_00200 mutL; (GenBank) DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D PDM29_20115 sbcB; (GenBank) exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D PDM29_00225 xseA; (GenBank) exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PDM29_01225 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PDM29_13825 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PDM29_07170 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PDM29_10455 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PDM29_01305 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PDM29_12125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PDM29_11960 dnaQ; (GenBank) DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PDM29_12020 dnaX; (GenBank) DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PDM29_12760 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PDM29_09570 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D PDM29_07030 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PDM29_07035 recC; (GenBank) exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PDM29_07025 recD; (GenBank) exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PDM29_14865 recA; (GenBank) recombinase RecA K03553 recA; recombination protein RecA
D PDM29_02490 ruvA; (GenBank) Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PDM29_02480 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PDM29_02495 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PDM29_04735 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PDM29_13395 radA; (GenBank) DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D PDM29_07175 recF; (GenBank) DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D PDM29_03165 recG; (GenBank) ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PDM29_01730 recO; (GenBank) DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PDM29_12030 recR; (GenBank) recombination mediator RecR K06187 recR; recombination protein RecR
D PDM29_15335 recN; (GenBank) DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PDM29_07570 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D PDM29_01050 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D PDM29_17010 Ku protein K10979 ku; DNA end-binding protein Ku
D PDM29_17015 ligD; (GenBank) DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D PDM29_20000 gyrA; (GenBank) DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PDM29_07180 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PDM29_04685 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PDM29_07605 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PDM29_11910 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PDM29_05045 fis; (GenBank) DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PDM29_00725 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D PDM29_15565 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D PDM29_02380 recQ; (GenBank) DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PDM29_05725 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D PDM29_20920 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D PDM29_10080 dinB; (GenBank) DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PDM29_14860 lexA; (GenBank) transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PDM29_18900 imuA; (GenBank) translesion DNA synthesis-associated protein ImuA K14160 imuA; protein ImuA
D PDM29_18905 DNA polymerase Y family protein K14161 imuB; protein ImuB
D PDM29_18910 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D PDM29_14870 recX; (GenBank) recombination regulator RecX K03565 recX; regulatory protein
D PDM29_07520 UvrD-helicase domain-containing protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D PDM29_02330 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PDM29_06005 dinG; (GenBank) ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PDM29_01675 ligase-associated DNA damage response DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D PDM29_04960 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D PDM29_08560 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PDM29_18440 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PDM29_08565 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PDM29_18445 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:sou03029]
D PDM29_14370 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PDM29_00800 infB; (GenBank) translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PDM29_00750 infC; (GenBank) translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PDM29_13900 tsf; (GenBank) translation elongation factor Ts K02357 tsf; elongation factor Ts
D PDM29_11420 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D PDM29_11485 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D PDM29_11480 fusA; (GenBank) elongation factor G K02355 fusA; elongation factor G
D PDM29_16890 fusA; (GenBank) elongation factor G K02355 fusA; elongation factor G
D PDM29_01735 era; (GenBank) GTPase Era K03595 era; GTPase
D PDM29_09155 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PDM29_01315 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PDM29_02520 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PDM29_09020 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PDM29_19370 toprim domain-containing protein K17680 PEO1; twinkle protein [EC:5.6.2.3]
D PDM29_12760 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PDM29_13855 bamA; (GenBank) outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D PDM29_15350 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D PDM29_15345 grpE; (GenBank) nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D PDM29_04820 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PDM29_04825 co-chaperone GroES K04078 groES; chaperonin GroES
D PDM29_15355 dnaJ; (GenBank) molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PDM29_03685 grxD; (GenBank) Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D PDM29_14425 grxD; (GenBank) Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D PDM29_01100 apbC; (GenBank) iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PDM29_09285 cyoE; (GenBank) heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PDM29_09255 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D PDM29_09280 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PDM29_07145 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PDM29_09270 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D PDM29_01030 SCO family protein K07152 SCO1; protein SCO1
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:sou02000]
D PDM29_14525 msbA; (GenBank) lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PDM29_14440 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D PDM29_13755 smrA; (GenBank) multidrug efflux ABC transporter SmrA K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D PDM29_15375 ABC transporter transmembrane domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PDM29_20370 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PDM29_20620 cydC; (GenBank) thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D PDM29_20625 cydD; (GenBank) thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D PDM29_14065 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D PDM29_15495 ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D PDM29_17845 modA; (GenBank) molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D PDM29_17840 modB; (GenBank) molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D PDM29_17835 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PDM29_16275 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PDM29_16285 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D PDM29_16280 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PDM29_03615 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D PDM29_14285 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D PDM29_14300 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D PDM29_14295 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein
D PDM29_14290 potA; (GenBank) polyamine ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D PDM29_15060 ugpC; (GenBank) sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PDM29_07050 mlaD; (GenBank) outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PDM29_10400 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PDM29_07045 MlaE family lipid ABC transporter permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PDM29_10410 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PDM29_07040 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PDM29_10405 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PDM29_10395 ABC-type transport auxiliary lipoprotein family protein K18480 linN; cholesterol transport system auxiliary component
D PDM29_07055 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D PDM29_07060 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D PDM29_20500 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PDM29_20495 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D PDM29_20490 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PDM29_14145 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PDM29_14150 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PDM29_14140 pstC; (GenBank) phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D PDM29_14135 pstA; (GenBank) phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D PDM29_14130 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PDM29_04465 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D PDM29_04245 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D PDM29_04250 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D PDM29_16870 ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D PDM29_16875 iron ABC transporter permease K25133 hmuU; heme transport system permease protein
D PDM29_16880 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D PDM29_07480 ATP-binding cassette domain-containing protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PDM29_10245 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D PDM29_10250 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D PDM29_10465 lptF; (GenBank) LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D PDM29_10470 lptG; (GenBank) LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D PDM29_12390 lptB; (GenBank) LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PDM29_06100 ABC transporter permease K09696 natB; sodium transport system permease protein
D PDM29_06105 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D PDM29_15105 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E_F; lipoprotein-releasing system permease protein
D PDM29_15110 lolD; (GenBank) lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PDM29_20580 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D PDM29_20575 ccmC; (GenBank) heme ABC transporter permease CcmC K02195 ccmC; heme exporter protein C
D PDM29_20570 ccmB; (GenBank) heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D PDM29_20565 ccmA; (GenBank) heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D PDM29_05140 ftsX; (GenBank) permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D PDM29_05145 ftsE; (GenBank) cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PDM29_06245 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D PDM29_14350 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D PDM29_17435 DUF3526 domain-containing protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PDM29_17440 DUF3526 domain-containing protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PDM29_20230 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PDM29_06240 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PDM29_14345 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PDM29_17430 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PDM29_20225 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PDM29_04355 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D PDM29_04360 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D PDM29_08890 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D PDM29_08895 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D PDM29_10985 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D PDM29_04350 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PDM29_08900 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PDM29_10990 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PDM29_12595 sufC; (GenBank) Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D PDM29_09305 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PDM29_04720 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D PDM29_13440 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D PDM29_05185 sugar MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D PDM29_16065 fucP; (GenBank) L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D PDM29_08860 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D PDM29_12960 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PDM29_18360 proP; (GenBank) glycine betaine/L-proline transporter ProP K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PDM29_00005 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D PDM29_20185 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D PDM29_09135 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D PDM29_18425 MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D PDM29_01890 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D PDM29_06325 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D PDM29_19710 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D PDM29_14015 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D PDM29_18060 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D PDM29_18350 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D PDM29_08470 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D PDM29_12350 ptsP; (GenBank) phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PDM29_12355 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D PDM29_12360 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PDM29_12375 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D PDM29_01785 aqpZ; (GenBank) aquaporin Z K06188 aqpZ; aquaporin Z
D PDM29_03305 ion transporter K10716 kch; voltage-gated potassium channel
D PDM29_07795 amt; (GenBank) ammonium transporter K03320 amt; ammonium transporter, Amt family
D PDM29_02615 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_04740 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_07085 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_11685 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_14035 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_14660 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_15465 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_16830 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_20355 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PDM29_14380 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D PDM29_03065 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PDM29_03070 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PDM29_02910 mscL; (GenBank) large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D PDM29_05620 DUF3772 domain-containing protein K05802 mscK; potassium-dependent mechanosensitive channel
D PDM29_19500 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D PDM29_09340 mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D PDM29_06350 mgtE; (GenBank) magnesium transporter K06213 mgtE; magnesium transporter
D PDM29_12345 mgtE; (GenBank) magnesium transporter K06213 mgtE; magnesium transporter
D PDM29_10000 motA; (GenBank) flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D PDM29_16425 flagellar motor protein K02556 motA; chemotaxis protein MotA
D PDM29_09995 motB; (GenBank) flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PDM29_16420 motD; (GenBank) flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D PDM29_07205 exbB; (GenBank) TonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D PDM29_14515 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D PDM29_03920 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D PDM29_07210 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D PDM29_07215 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D PDM29_14520 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D PDM29_02470 tolQ; (GenBank) protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D PDM29_02465 tolR; (GenBank) protein TolR K03560 tolR; biopolymer transport protein TolR
D PDM29_14310 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D PDM29_16795 crcB; (GenBank) fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D PDM29_04870 bestrophin family ion channel K08994 yneE; ion channel-forming bestrophin family protein
D PDM29_06035 bestrophin family ion channel K08994 yneE; ion channel-forming bestrophin family protein
D PDM29_14720 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PDM29_03575 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D PDM29_03630 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D PDM29_14155 OprO/OprP family phosphate-selective porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D PDM29_16290 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D PDM29_00030 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D PDM29_06740 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D PDM29_11705 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D PDM29_09215 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein
D PDM29_03700 autotransporter domain-containing protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D PDM29_02870 autotransporter domain-containing protein K12686 apeE; outer membrane lipase/esterase
D PDM29_12555 catecholate siderophore receptor Fiu K16090 fiu; catecholate siderophore receptor
D PDM29_10100 btuB; (GenBank) TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D PDM29_03905 fhuE; (GenBank) ferric-rhodotorulic acid/ferric-coprogen receptor FhuE K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PDM29_04315 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PDM29_13010 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PDM29_13535 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PDM29_08180 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D PDM29_12540 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D PDM29_13515 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D PDM29_03390 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D PDM29_10190 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D PDM29_10955 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D PDM29_00245 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_01105 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_01280 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_02190 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_02560 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_02635 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_02950 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_03430 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_03915 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_03970 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_04850 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_04930 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_05275 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_05860 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_07300 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_07460 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_08295 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_10170 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_11395 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_11800 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_12230 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_12675 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_12755 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_13650 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_14215 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_16885 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_17740 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_19910 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PDM29_06615 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D PDM29_17290 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_15240 efflux transporter outer membrane subunit K18300 oprN; outer membrane protein, multidrug efflux system
D PDM29_04160 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14005 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14060 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_16960 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_13855 bamA; (GenBank) outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D PDM29_15635 bamB; (GenBank) outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D PDM29_02670 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D PDM29_15325 bamE; (GenBank) outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D PDM29_06800 autotransporter assembly complex protein TamA K07278 tamA; translocation and assembly module TamA
D PDM29_06795 translocation/assembly module TamB K09800 tamB; translocation and assembly module TamB
D PDM29_10540 ESPR-type extended signal peptide-containing protein K21449 ata; trimeric autotransporter adhesin
D PDM29_18270 YadA-like family protein K21449 ata; trimeric autotransporter adhesin
D PDM29_12395 lptA; (GenBank) lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D PDM29_12400 lptC; (GenBank) LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D PDM29_11125 lptD; (GenBank) LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D PDM29_01310 lptE; (GenBank) LPS assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D PDM29_00460 MipA/OmpV family protein K07274 mipA; MipA family protein
D PDM29_16970 MipA/OmpV family protein K07274 mipA; MipA family protein
D PDM29_17060 MipA/OmpV family protein K07274 mipA; MipA family protein
D PDM29_01425 sctE; (GenBank) type III secretion system translocon subunit SctE K13285 sipB; invasin B
D PDM29_14320 CBS domain-containing protein K06189 corC; hemolysin (HlyC) family protein
D PDM29_12690 MFS transporter K16211 malY; maltose/moltooligosaccharide transporter
D PDM29_16915 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D PDM29_16920 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D PDM29_19035 adiC; (GenBank) arginine/agmatine antiporter K03759 adiC; arginine:agmatine antiporter
D PDM29_13560 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D PDM29_20465 zupT; (GenBank) zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D PDM29_06605 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D PDM29_17300 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D PDM29_03505 efflux RND transporter permease subunit K18303 mexK; multidrug efflux pump
D PDM29_02940 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_04165 smeE; (GenBank) multidrug efflux RND transporter permease subunit SmeE K18138 acrB; multidrug efflux pump
D PDM29_08275 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_15515 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_16955 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_20155 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_15230 multidrug efflux RND transporter permease subunit K19585 oqxB; multidrug efflux pump
D PDM29_04800 MdtB/MuxB family multidrug efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump
D PDM29_05265 efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump
D PDM29_04805 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump
D PDM29_05270 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump
D PDM29_12000 multidrug efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D PDM29_03895 EamA family transporter K11939 rhtA; inner membrane transporter RhtA
D PDM29_08870 rarD; (GenBank) EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D PDM29_02250 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D PDM29_13350 lactate permease LctP family transporter K03303 lutP; lactate permease
D PDM29_03455 BCCT family transporter K05020 opuD; glycine betaine transporter
D PDM29_18075 betT; (GenBank) choline BCCT transporter BetT K02168 betT; choline/glycine/proline betaine transport protein
D PDM29_05510 sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter
D PDM29_03570 dicarboxylate/amino acid:cation symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D PDM29_08640 sstT; (GenBank) serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D PDM29_09970 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D PDM29_06355 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D PDM29_15650 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D PDM29_02585 ybaL; (GenBank) YbaL family putative K(+) efflux transporter K26735 KEA4_5_6; K+:H+ antiporter
D PDM29_13980 cation:proton antiporter K26731 CHX; K+:H+ antiporter
D PDM29_02620 hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D PDM29_10620 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D PDM29_06910 benzoate/H(+) symporter BenE family transporter K05782 benE; benzoate membrane transport protein
D PDM29_18065 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D PDM29_04525 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D PDM29_03780 Nramp family divalent metal transporter K03322 mntH; manganese transport protein
D PDM29_18625 Nramp family divalent metal transporter K03322 mntH; manganese transport protein
D PDM29_07380 TRAP transporter substrate-binding protein K11688 dctP; TRAP-type transport system periplasmic protein
D PDM29_07385 TRAP transporter small permease K11689 dctQ; TRAP-type transport system small permease protein
D PDM29_07390 TRAP transporter large permease K11690 dctM; TRAP-type transport system large permease protein
D PDM29_12835 Na/Pi symporter K03324 yjbB; phosphate:Na+ symporter
D PDM29_07930 arsB; (GenBank) ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D PDM29_17255 arsB; (GenBank) ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D PDM29_05480 monovalent cation/H+ antiporter subunit A K05559 phaA; multicomponent K+:H+ antiporter subunit A
D PDM29_05485 Na+/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C
D PDM29_05490 monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D
D PDM29_05495 Na+/H+ antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E
D PDM29_05500 K+/H+ antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F
D PDM29_05505 Na+/H+ antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G
D PDM29_13225 murJ; (GenBank) murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D PDM29_08370 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D PDM29_02485 potassium transporter Kup K03549 kup; KUP system potassium uptake protein
D PDM29_13030 LysE family transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D PDM29_08605 LysE family transporter K05835 rhtC; threonine efflux protein
D PDM29_07100 leuE; (GenBank) leucine efflux protein LeuE K11250 leuE; leucine efflux protein
D PDM29_09450 queuosine precursor transporter K09125 yhhQ; queuosine precursor transporter
D PDM29_10775 ftsW; (GenBank) putative lipid II flippase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D PDM29_17395 alaE; (GenBank) L-alanine exporter AlaE K28156 alaE; L-alanine exporter
D PDM29_06710 mntP; (GenBank) manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein
D PDM29_01800 carbon starvation protein A K06200 cstA; carbon starvation protein
D PDM29_01275 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_02320 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_06090 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_07200 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_07885 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_12580 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_19840 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_20460 energy transducer TonB K03832 tonB; periplasmic protein TonB
D PDM29_02445 pal; (GenBank) peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D PDM29_02460 tolA; (GenBank) cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein
D PDM29_02450 tolB; (GenBank) Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D PDM29_03370 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D PDM29_13005 mdcA; (GenBank) malonate decarboxylase subunit alpha K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187]
D PDM29_13000 mdcC; (GenBank) malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit
D PDM29_14010 emrA; (GenBank) multidrug efflux MFS transporter periplasmic adaptor subunit EmrA K03543 emrA; membrane fusion protein, multidrug efflux system
D PDM29_06610 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D PDM29_17295 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D PDM29_14445 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D PDM29_03510 efflux RND transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D PDM29_02945 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_04170 smeD; (GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_08270 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_15510 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_16950 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_17035 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_20150 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_15225 efflux RND transporter periplasmic adaptor subunit K19586 oqxA; membrane fusion protein, multidrug efflux system
D PDM29_04795 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D PDM29_05260 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D PDM29_14070 efflux RND transporter periplasmic adaptor subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D PDM29_08290 pnuC; (GenBank) nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D PDM29_09230 pnuC; (GenBank) nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D PDM29_16165 FeoA family protein K04758 feoA; ferrous iron transport protein A
D PDM29_16170 feoB; (GenBank) ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D PDM29_08820 entericidin A/B family lipoprotein K16347 ecnA; entericidin A
D PDM29_20590 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D PDM29_18875 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D PDM29_17005 DUF202 domain-containing protein K00389 yidH; inner membrane protein YidH
D PDM29_18720 DUF202 domain-containing protein K00389 yidH; inner membrane protein YidH
C 02044 Secretion system [BR:sou02044]
D PDM29_14440 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D PDM29_14445 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_10600 gspD; (GenBank) type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D PDM29_06830 GspE/PulE family protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PDM29_10550 gspE; (GenBank) type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PDM29_10555 type II secretion system F family protein K02455 gspF; general secretion pathway protein F
D PDM29_10560 gspG; (GenBank) type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G
D PDM29_10565 GspH/FimT family pseudopilin K02457 gspH; general secretion pathway protein H
D PDM29_10570 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I
D PDM29_10575 type II secretion system protein J K02459 gspJ; general secretion pathway protein J
D PDM29_10580 type II secretion system protein GspK K02460 gspK; general secretion pathway protein K
D PDM29_10585 PilN domain-containing protein K02461 gspL; general secretion pathway protein L
D PDM29_10590 gspM; (GenBank) type II secretion system protein GspM K02462 gspM; general secretion pathway protein M
D PDM29_10595 general secretion pathway protein GspN K02463 gspN; general secretion pathway protein N
D PDM29_02830 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PDM29_02810 pilin K02650 pilA; type IV pilus assembly protein PilA
D PDM29_02820 pilin K02650 pilA; type IV pilus assembly protein PilA
D PDM29_04675 GYF domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D PDM29_02815 pilB; (GenBank) type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D PDM29_02825 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D PDM29_14485 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D PDM29_15620 tetratricopeptide repeat protein K02656 pilF; type IV pilus assembly protein PilF
D PDM29_02310 response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D PDM29_01990 pilH; (GenBank) twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02305 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02300 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D PDM29_02295 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D PDM29_03110 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D PDM29_03105 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN
D PDM29_03100 type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D PDM29_03095 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D PDM29_03090 type IV pilus secretin PilQ family protein K02666 pilQ; type IV pilus assembly protein PilQ
D PDM29_12280 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D PDM29_10210 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D PDM29_12285 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D PDM29_14465 pilV; (GenBank) type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D PDM29_14470 PilW family protein K02672 pilW; type IV pilus assembly protein PilW
D PDM29_14480 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1
D PDM29_12130 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ
D PDM29_14460 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT
D PDM29_14495 GspH/FimT family protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D PDM29_01005 fimbrial protein FimV K08086 fimV; pilus assembly protein FimV
D PDM29_18780 A24 family peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D PDM29_18790 cpaB; (GenBank) Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D PDM29_18795 type II and III secretion system protein family protein K02280 cpaC; pilus assembly protein CpaC
D PDM29_18800 fimbrial protein K02282 cpaE; pilus assembly protein CpaE
D PDM29_18805 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PDM29_18810 type II secretion system F family protein K12510 tadB; tight adherence protein B
D PDM29_18815 type II secretion system F family protein K12511 tadC; tight adherence protein C
D PDM29_18820 tetratricopeptide repeat protein K27079 tadD; tight adherence protein D
D PDM29_18785 pilus assembly protein K12513 tadE; tight adherence protein E
D PDM29_18830 TadG family pilus assembly protein K27080 tadG; tight adherence protein G
D PDM29_18775 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D PDM29_12495 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D PDM29_14510 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D PDM29_01380 hypothetical protein K03221 yscF; type III secretion protein F
D PDM29_01455 sctQ; (GenBank) type III secretion system cytoplasmic ring protein SctQ K03225 yscQ; type III secretion protein Q
D PDM29_01480 EscV/YscV/HrcV family type III secretion system export apparatus protein K03230 yscV; type III secretion protein V
D PDM29_01490 sctC; (GenBank) type III secretion system outer membrane ring subunit SctC K22504 invG; type III secretion system outer membrane ring protein
D PDM29_01370 sctJ; (GenBank) type III secretion inner membrane ring lipoprotein SctJ K22505 prgK; type III secretion system inner membrane ring protein
D PDM29_01470 FliI/YscN family ATPase K22506 spaL; type III secretion system ATPase [EC:7.4.2.8]
D PDM29_01450 EscR/YscR/HrcR family type III secretion system export apparatus protein K22507 spaP; type III secretion system export apparatus protein
D PDM29_01445 sctS; (GenBank) type III secretion system export apparatus subunit SctS K22508 spaQ; type III secretion system export apparatus protein
D PDM29_01440 sctT; (GenBank) type III secretion system export apparatus subunit SctT K22509 spaR; type III secretion system export apparatus protein
D PDM29_01435 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K22510 spaS; type III secretion system export apparatus switch protein
D PDM29_01485 sctW; (GenBank) type III secretion system gatekeeper subunit SctW K22511 invE; type III secretion system protein
D PDM29_01475 hypothetical protein K22512 spaK; type III secretion system chaperone
D PDM29_01385 hypothetical protein K22488 prgH; type III secretion system protein
D PDM29_01375 sctI; (GenBank) type III secretion system inner rod subunit SctI K22487 prgJ; type III secretion system protein
D PDM29_16460 flhA; (GenBank) flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PDM29_16465 flhB; (GenBank) flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PDM29_16535 fliF; (GenBank) flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D PDM29_16525 FliH/SctL family protein K02411 fliH; flagellar assembly protein FliH
D PDM29_16520 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PDM29_16495 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PDM29_16490 fliO; (GenBank) flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D PDM29_16485 fliP; (GenBank) flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D PDM29_16480 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PDM29_16475 fliR; (GenBank) flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D PDM29_19665 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1
D PDM29_19660 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2
D PDM29_19655 VirB3 family type IV secretion system protein K03198 virB3; type IV secretion system protein VirB3
D PDM29_20795 VirB3 family type IV secretion system protein K03198 virB3; type IV secretion system protein VirB3
D PDM29_19650 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D PDM29_20790 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D PDM29_20785 hypothetical protein K03200 virB5; type IV secretion system protein VirB5
D PDM29_19565 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D PDM29_19640 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D PDM29_20775 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6
D PDM29_19685 VirB8/TrbF family protein K03203 virB8; type IV secretion system protein VirB8
D PDM29_20770 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8
D PDM29_19680 TrbG/VirB9 family P-type conjugative transfer protein K03204 virB9; type IV secretion system protein VirB9
D PDM29_20765 TrbG/VirB9 family P-type conjugative transfer protein K03204 virB9; type IV secretion system protein VirB9
D PDM29_19675 secretion protein K03195 virB10; type IV secretion system protein VirB10
D PDM29_20760 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D PDM29_19670 virB11; (GenBank) P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D PDM29_20755 virB11; (GenBank) P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D PDM29_19695 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D PDM29_20750 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D PDM29_10490 thioredoxin fold domain-containing protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PDM29_03700 autotransporter domain-containing protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D PDM29_02870 autotransporter domain-containing protein K12686 apeE; outer membrane lipase/esterase
D PDM29_13910 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_13930 molecular chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_13920 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PDM29_13935 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PDM29_16840 CS1 fimbrial subunit B flags: Precursor K21965 ecpB; Mat/Ecp fimbriae periplasmic chaperone
D PDM29_10825 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PDM29_07995 secB; (GenBank) protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D PDM29_15425 secD; (GenBank) protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PDM29_11430 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PDM29_15430 secF; (GenBank) protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D PDM29_00915 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PDM29_11595 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PDM29_13405 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PDM29_15130 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PDM29_15420 yajC; (GenBank) preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PDM29_07145 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PDM29_06855 tatA; (GenBank) Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D PDM29_06850 tatB; (GenBank) Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D PDM29_06845 tatC; (GenBank) twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:sou02042]
D PDM29_14720 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PDM29_02155 hemolysin III family protein K11068 hlyIII; hemolysin III
D PDM29_08285 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:sou02022]
D PDM29_11815 phoR; (GenBank) phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PDM29_11820 phoB; (GenBank) phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PDM29_08760 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PDM29_08755 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PDM29_13600 creC; (GenBank) two-component system sensor histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D PDM29_13595 creB; (GenBank) two-component system response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D PDM29_09095 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PDM29_09090 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PDM29_03620 sensor histidine kinase N-terminal domain-containing protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D PDM29_03625 response regulator transcription factor K07774 tctD; two-component system, OmpR family, response regulator TctD
D PDM29_05650 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D PDM29_08150 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D PDM29_14075 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D PDM29_08065 response regulator K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PDM29_08075 response regulator K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PDM29_08060 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PDM29_08305 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PDM29_16815 response regulator transcription factor K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PDM29_15030 response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PDM29_08310 transporter substrate-binding domain-containing protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PDM29_04495 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D PDM29_04490 LytTR family DNA-binding domain-containing protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D PDM29_08970 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D PDM29_07935 ATP-binding protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PDM29_07940 ntrC; (GenBank) nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PDM29_02700 HAMP domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D PDM29_02705 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D PDM29_16685 ATP-binding protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D PDM29_16395 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16400 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16440 cheY; (GenBank) chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_19530 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_16665 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PDM29_02290 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PDM29_02310 response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D PDM29_01990 pilH; (GenBank) twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02305 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02285 chemotaxis protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D PDM29_07840 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D PDM29_16235 ATP-binding protein K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D PDM29_16230 two-component system response regulator K13815 rpfG; two-component system, response regulator RpfG
D PDM29_15015 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D PDM29_15010 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
C 02035 Bacterial motility proteins [BR:sou02035]
D PDM29_16395 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16430 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PDM29_16370 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PDM29_16410 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PDM29_16345 cheD; (GenBank) chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D PDM29_16350 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PDM29_19535 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PDM29_16340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_19530 chemotaxis protein CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PDM29_16400 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16440 cheY; (GenBank) chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PDM29_16435 protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D PDM29_16665 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PDM29_00250 Cache 3/Cache 2 fusion domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_01955 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_04860 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_06315 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16355 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16360 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16390 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16710 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_19435 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D PDM29_16525 FliH/SctL family protein K02411 fliH; flagellar assembly protein FliH
D PDM29_16520 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PDM29_16515 fliJ; (GenBank) flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D PDM29_16490 fliO; (GenBank) flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D PDM29_16485 fliP; (GenBank) flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D PDM29_16480 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PDM29_16475 fliR; (GenBank) flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D PDM29_16460 flhA; (GenBank) flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PDM29_16465 flhB; (GenBank) flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PDM29_16530 fliG; (GenBank) flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D PDM29_16500 fliM; (GenBank) flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D PDM29_16495 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D PDM29_16535 fliF; (GenBank) flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D PDM29_16625 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D PDM29_16670 flgA; (GenBank) flagellar basal body P-ring formation chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D PDM29_16630 flgH; (GenBank) flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D PDM29_16505 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D PDM29_16540 fliE; (GenBank) flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D PDM29_16510 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D PDM29_16660 flgB; (GenBank) flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D PDM29_16655 flgC; (GenBank) flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D PDM29_16650 flgD; (GenBank) flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D PDM29_16640 flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D PDM29_16635 flgG; (GenBank) flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D PDM29_16620 flgJ; (GenBank) flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D PDM29_16645 flgE; (GenBank) flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D PDM29_16615 flgK; (GenBank) flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D PDM29_16610 flgL; (GenBank) flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D PDM29_16590 flagellin K02406 fliC; flagellin
D PDM29_16595 flagellin K02406 fliC; flagellin
D PDM29_16600 flagellin K02406 fliC; flagellin
D PDM29_16605 flagellin K02406 fliC; flagellin
D PDM29_16585 fliD; (GenBank) flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D PDM29_16580 fliS; (GenBank) flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D PDM29_16445 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D PDM29_10000 motA; (GenBank) flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D PDM29_16425 flagellar motor protein K02556 motA; chemotaxis protein MotA
D PDM29_09995 motB; (GenBank) flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D PDM29_16420 motD; (GenBank) flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D PDM29_16550 sigma-54 dependent transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PDM29_16675 flgM; (GenBank) flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PDM29_16455 flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D PDM29_16450 MinD/ParA family protein K04562 flhG; flagellar biosynthesis protein FlhG
D PDM29_02310 response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D PDM29_01990 pilH; (GenBank) twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02305 response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D PDM29_02300 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI
D PDM29_02295 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D PDM29_02290 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PDM29_02705 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D PDM29_02700 HAMP domain-containing sensor histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D PDM29_12280 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D PDM29_10210 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D PDM29_12285 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU
D PDM29_02285 chemotaxis protein K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D PDM29_02280 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC
D PDM29_02810 pilin K02650 pilA; type IV pilus assembly protein PilA
D PDM29_02820 pilin K02650 pilA; type IV pilus assembly protein PilA
D PDM29_04675 GYF domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D PDM29_02815 pilB; (GenBank) type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D PDM29_02825 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D PDM29_02830 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PDM29_15620 tetratricopeptide repeat protein K02656 pilF; type IV pilus assembly protein PilF
D PDM29_03090 type IV pilus secretin PilQ family protein K02666 pilQ; type IV pilus assembly protein PilQ
D PDM29_03095 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D PDM29_03100 type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D PDM29_03105 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN
D PDM29_03110 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D PDM29_12130 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ
D PDM29_14465 pilV; (GenBank) type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D PDM29_14470 PilW family protein K02672 pilW; type IV pilus assembly protein PilW
D PDM29_14480 PilC/PilY family type IV pilus protein K02674 pilY1; type IV pilus assembly protein PilY1
D PDM29_14485 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D PDM29_18775 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D PDM29_18780 A24 family peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D PDM29_18790 cpaB; (GenBank) Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D PDM29_18795 type II and III secretion system protein family protein K02280 cpaC; pilus assembly protein CpaC
D PDM29_18800 fimbrial protein K02282 cpaE; pilus assembly protein CpaE
D PDM29_18805 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PDM29_13910 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_13930 molecular chaperone K07346 fimC; fimbrial chaperone protein
D PDM29_13920 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PDM29_13935 spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:sou04812]
D PDM29_04115 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PDM29_10805 ftsZ; (GenBank) cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PDM29_10800 ftsA; (GenBank) cell division protein FtsA K03590 ftsA; cell division protein FtsA
D PDM29_13085 minC; (GenBank) septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D PDM29_13080 minD; (GenBank) septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D PDM29_13075 minE; (GenBank) cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D PDM29_06655 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_07730 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_16415 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_20690 ParA family protein K03496 parA; chromosome partitioning protein
D PDM29_06650 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_20695 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PDM29_20955 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:sou04147]
D PDM29_15140 htpG; (GenBank) molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D PDM29_02980 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PDM29_14750 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PDM29_03010 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PDM29_02995 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PDM29_02985 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PDM29_07110 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PDM29_04820 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PDM29_15350 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D PDM29_15005 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PDM29_06060 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D PDM29_15660 guaB; (GenBank) IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PDM29_11420 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D PDM29_11485 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D PDM29_03590 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PDM29_12035 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PDM29_09305 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PDM29_16245 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D PDM29_01645 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_07960 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PDM29_01845 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D PDM29_10880 ahcY; (GenBank) adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PDM29_03355 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PDM29_15475 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PDM29_00050 argH; (GenBank) argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PDM29_00070 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PDM29_10235 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PDM29_07290 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PDM29_04460 glpK; (GenBank) glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PDM29_07785 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_14280 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PDM29_06030 hemB; (GenBank) porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PDM29_05530 hppD; (GenBank) 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D PDM29_20455 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PDM29_01215 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D PDM29_16115 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PDM29_05080 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PDM29_04430 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_20280 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PDM29_10310 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D PDM29_15055 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PDM29_00920 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PDM29_13565 gpmA; (GenBank) 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PDM29_00405 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
D PDM29_04230 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
D PDM29_05625 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
D PDM29_18215 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:sou02048]
D PDM29_05825 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PDM29_00710 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09575 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_09745 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PDM29_06560 hypothetical protein K19048 symE; toxic protein SymE
D PDM29_06790 hypothetical protein K19048 symE; toxic protein SymE
D PDM29_07280 SymE family type I addiction module toxin K19048 symE; toxic protein SymE
D PDM29_05890 type II toxin-antitoxin system PrlF family antitoxin K19156 prlF; antitoxin PrlF
D PDM29_06680 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D PDM29_01810 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_01960 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_07705 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_08110 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_14560 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_14620 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_15770 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PDM29_07710 helix-turn-helix transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PDM29_15280 hypothetical protein K18843 hicB; antitoxin HicB
D PDM29_04240 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D PDM29_00325 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_03980 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_04235 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_06135 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_09635 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_12155 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_13310 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_13320 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_14595 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_19920 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D PDM29_10805 ftsZ; (GenBank) cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PDM29_04115 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PDM29_13995 parC; (GenBank) DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PDM29_14735 parE; (GenBank) DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PDM29_13615 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PDM29_15100 hypothetical protein K19168 cptA; toxin CptA
D PDM29_15095 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:sou04052]
D PDM29_08625 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:sou04090]
D PDM29_06060 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D PDM29_01845 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
C 01504 Antimicrobial resistance genes [BR:sou01504]
D PDM29_15745 aminoglycoside phosphotransferase family protein K18844 aph; spectinomycin phosphotransferase
D PDM29_18425 MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D PDM29_18060 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D PDM29_03035 TonB family protein K02172 blaR1; bla regulator protein blaR1
D PDM29_07630 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D PDM29_03040 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PDM29_13525 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PDM29_02545 blaL2; (GenBank) L2 family class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D PDM29_13125 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PDM29_09410 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PDM29_01530 mprF; (GenBank) bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D PDM29_08760 sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PDM29_08755 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PDM29_02945 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_04170 smeD; (GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_08270 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_15510 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_16950 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_17035 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_20150 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PDM29_02940 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_04165 smeE; (GenBank) multidrug efflux RND transporter permease subunit SmeE K18138 acrB; multidrug efflux pump
D PDM29_08275 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_15515 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_16955 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_20155 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D PDM29_04160 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14005 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_14060 TolC family protein K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_16960 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D PDM29_15240 efflux transporter outer membrane subunit K18300 oprN; outer membrane protein, multidrug efflux system
D PDM29_03515 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PDM29_03510 efflux RND transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D PDM29_03505 efflux RND transporter permease subunit K18303 mexK; multidrug efflux pump
D PDM29_17275 helix-turn-helix domain-containing protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PDM29_19055 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PDM29_03525 TolC family outer membrane protein K12340 tolC; outer membrane protein
D PDM29_17490 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PDM29_18970 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:sou00537]
D PDM29_01215 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D PDM29_13260 treA; (GenBank) alpha,alpha-trehalase TreA K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D PDM29_07110 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:sou03200]
D PDM29_19420 T3/T7 RNA polymerase K21313 1; Autographiviridae RNA polymerase [EC:2.7.7.6]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:sou03100]
D PDM29_00255 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_06900 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_09165 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19065 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19075 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19085 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_19095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PDM29_05845 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_11860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_14905 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_14910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_14915 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_15820 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PDM29_01285 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PDM29_14490 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PDM29_19285 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PDM29_11920 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PDM29_11925 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PDM29_11930 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PDM29_14585 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PDM29_05365 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PDM29_11370 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PDM29_14975 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19070 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19080 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19090 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_19100 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PDM29_02865 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_11410 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_14555 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_14575 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_14580 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PDM29_11865 tRNA-His K14226 tRNA-His; tRNA His
D PDM29_06895 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PDM29_09170 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PDM29_00910 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_11885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_14655 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_19115 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_19170 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PDM29_02425 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PDM29_11870 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PDM29_11875 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PDM29_00825 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_00835 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_04585 tRNA-Ile K14230 tRNA-Met; tRNA Met
D PDM29_05360 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_19280 tRNA-Met K14230 tRNA-Met; tRNA Met
D PDM29_00390 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PDM29_00715 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_11855 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_20645 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_20650 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PDM29_11970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_12015 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_14885 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_19815 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PDM29_08790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PDM29_11415 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PDM29_13280 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PDM29_11425 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PDM29_11405 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PDM29_11915 tRNA-Val K14237 tRNA-Val; tRNA Val
D PDM29_12135 tRNA-Val K14237 tRNA-Val; tRNA Val
D PDM29_14505 tRNA-Val K14237 tRNA-Val; tRNA Val
D PDM29_06905 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PDM29_09160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PDM29_06890 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PDM29_09175 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PDM29_06885 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_09180 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_09185 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PDM29_10725 rnpB; (GenBank) RNase P RNA component class A K01978 rnpB; RNase P catalytic RNA component
D PDM29_15300 ssrA; (GenBank) transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
D PDM29_03250 ssrS; (GenBank) 6S RNA K28358 ssrS; RNA polymerase binding 6S RNA
D PDM29_11995 ffs; (GenBank) signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PDM29_09010 SDR family NAD(P)-dependent oxidoreductase K05886 sdh; serine 3-dehydrogenase (NADP+) [EC:1.1.1.276]
D PDM29_06330 dkgB; (GenBank) 2,5-didehydrogluconate reductase DkgB K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D PDM29_08385 NAD-dependent epimerase/dehydratase family protein K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D PDM29_12790 GMC family oxidoreductase K26059 gtd1; glucoside 3-dehydrogenase (cytochrome c) catalytic subunit [EC:1.1.2.11]
D PDM29_09355 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D PDM29_17710 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D PDM29_06685 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D PDM29_07715 indolepyruvate ferredoxin oxidoreductase family protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D PDM29_11695 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D PDM29_15875 NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D PDM29_08320 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D PDM29_19825 NAD(P)H-dependent oxidoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D PDM29_11215 ahpF; (GenBank) alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D PDM29_10125 msrA; (GenBank) peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PDM29_11195 msrA; (GenBank) peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PDM29_10005 msrB; (GenBank) peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PDM29_10135 msrB; (GenBank) peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PDM29_06065 glutathione S-transferase N-terminal domain-containing protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D PDM29_00340 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D PDM29_04565 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D PDM29_17695 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D PDM29_14945 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PDM29_11220 ahpC; (GenBank) alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D PDM29_04875 Ohr family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PDM29_08145 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PDM29_08690 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PDM29_12635 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PDM29_01795 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PDM29_14890 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PDM29_07360 cysteine dioxygenase family protein K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91]
D PDM29_12550 Fe2+-dependent dioxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D PDM29_20375 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D PDM29_17235 arsC; (GenBank) arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D PDM29_20350 arsC; (GenBank) arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D PDM29_07925 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PDM29_17250 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PDM29_17270 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PDM29_03520 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D PDM29_14785 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D PDM29_18200 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D PDM29_18210 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D PDM29_20395 cfa; (GenBank) cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D PDM29_08325 N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D PDM29_03730 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D PDM29_14315 DUF4105 domain-containing protein K27956 lnb; lipoprotein N-acyltransferase [EC:2.3.1.-]
D PDM29_16755 aat; (GenBank) leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PDM29_12045 DUF3488 and transglutaminase-like domain-containing protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D PDM29_13160 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D PDM29_08355 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D PDM29_02540 ggpS; (GenBank) glucosylglycerol-phosphate synthase K03692 E2.4.1.213; glucosylglycerol-phosphate synthase [EC:2.4.1.213]
D PDM29_12980 mdcB; (GenBank) triphosphoribosyl-dephospho-CoA synthase MdcB K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D PDM29_11060 lgt; (GenBank) prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PDM29_12520 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D PDM29_19490 kinase/pyrophosphorylase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D PDM29_09445 glnE; (GenBank) bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D PDM29_13555 GGDEF domain-containing protein K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D PDM29_12985 mdcG; (GenBank) malonate decarboxylase holo-[acyl-carrier-protein] synthase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66]
D PDM29_15470 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D PDM29_17205 CBASS cGAMP synthase K25555 dncV; cyclic GMP-AMP synthase [EC:2.7.7.-]
D PDM29_05605 phosphoglycerol transferase I K01002 mdoB; phosphoglycerol transferase [EC:2.7.8.20]
D PDM29_05210 aceK; (GenBank) bifunctional isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D PDM29_12370 hprK; (GenBank) HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D PDM29_03580 PAS-domain containing protein K10819 E2.7.13.3; histidine kinase [EC:2.7.13.3]
D PDM29_18100 CaiB/BaiF CoA-transferase family protein K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D PDM29_13130 alpha/beta fold hydrolase K24085 estD; esterase [EC:3.1.1.1]
D PDM29_17885 beta galactosidase jelly roll domain-containing protein K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D PDM29_02970 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D PDM29_16860 alpha/beta hydrolase-fold protein K23722 pfeE; iron(III)-enterobactin esterase [EC:3.1.1.108]
D PDM29_07365 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D PDM29_02475 ybgC; (GenBank) tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PDM29_06425 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PDM29_13195 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PDM29_07735 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D PDM29_09865 EAL domain-containing protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D PDM29_13340 MBL fold metallo-hydrolase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D PDM29_06255 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PDM29_20320 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PDM29_17890 alpha-glucuronidase family glycosyl hydrolase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139]
D PDM29_04655 def; (GenBank) peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PDM29_12065 Maf family nucleotide pyrophosphatase K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D PDM29_03085 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PDM29_05975 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PDM29_07675 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PDM29_12055 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PDM29_18300 type 2 lanthipeptide synthetase LanM family protein K27862 lanM; class II lanthipeptide synthase [EC:3.13.2.4]
D PDM29_12995 biotin-independent malonate decarboxylase subunit beta K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87]
D PDM29_12990 mdcE; (GenBank) biotin-independent malonate decarboxylase subunit gamma K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87]
D PDM29_08360 alpha/beta fold hydrolase K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D PDM29_00215 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D PDM29_14170 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D PDM29_08380 fatty acid CoA ligase family protein K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D PDM29_03350 mpl; (GenBank) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D PDM29_06540 rtcA; (GenBank) RNA 3'-terminal phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
D PDM29_01520 rnfB; (GenBank) Rnf electron transport complex subunit RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
C 99981 Carbohydrate metabolism
D PDM29_12795 gluconate 2-dehydrogenase subunit 3 family protein K26060 gtd2; glucoside 3-dehydrogenase (cytochrome c) hitch-hiker subunit
C 99982 Energy metabolism
D PDM29_14965 ferredoxin family protein K05524 fdxA; ferredoxin
D PDM29_10315 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D PDM29_01660 acyl-CoA dehydrogenase family protein K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PDM29_01500 VOC family protein K08234 yaeR; glyoxylase I family protein
D PDM29_12275 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D PDM29_18920 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D PDM29_15570 LapA family protein K08992 lapA; lipopolysaccharide assembly protein A
D PDM29_15575 lapB; (GenBank) lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D PDM29_07965 heme biosynthesis protein HemY K02498 hemY; HemY protein
D PDM29_08400 ubiB; (GenBank) ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D PDM29_14855 ubiB; (GenBank) 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D PDM29_08395 SCP2 sterol-binding domain-containing protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D PDM29_05690 accessory factor UbiK family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
D PDM29_20295 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D PDM29_14095 DoxX family protein K15977 K15977; putative oxidoreductase
D PDM29_17675 DoxX family protein K15977 K15977; putative oxidoreductase
D PDM29_18585 DoxX family protein K15977 K15977; putative oxidoreductase
D PDM29_04500 alpha/beta hydrolase K06999 K06999; phospholipase/carboxylesterase
D PDM29_06345 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PDM29_01695 cold-shock protein K03704 cspA; cold shock protein
D PDM29_15460 cold-shock protein K03704 cspA; cold shock protein
D PDM29_20335 cold-shock protein K03704 cspA; cold shock protein
D PDM29_19445 Tex family protein K06959 tex; protein Tex
C 99974 Translation
D PDM29_01665 ligase-associated DNA damage response exonuclease K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D PDM29_16735 clpS; (GenBank) ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PDM29_11890 tig; (GenBank) trigger factor K03545 tig; trigger factor
D PDM29_15310 smpB; (GenBank) SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D PDM29_05765 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D PDM29_04015 20S proteasome subunit A/B K07395 K07395; putative proteasome-type protease
D PDM29_20450 NfuA family Fe-S biogenesis protein K07400 nfuA; Fe/S biogenesis protein NfuA
D PDM29_17825 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D PDM29_01140 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D PDM29_09025 radC; (GenBank) DNA repair protein RadC K03630 radC; DNA repair protein RadC
D PDM29_20980 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D PDM29_07080 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D PDM29_10700 YraN family protein K07460 yraN; putative endonuclease
D PDM29_04785 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D PDM29_04665 dprA; (GenBank) DNA-processing protein DprA K04096 smf; DNA processing protein
D PDM29_16790 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D PDM29_00615 DUF5906 domain-containing protein K06919 K06919; putative DNA primase/helicase
D PDM29_09810 transposase K07491 rayT; REP-associated tyrosine transposase
D PDM29_01865 transposase K07493 K07493; putative transposase
D PDM29_01870 transposase K07493 K07493; putative transposase
D PDM29_01900 IS256 family transposase K07493 K07493; putative transposase
D PDM29_01935 IS256 family transposase K07493 K07493; putative transposase
D PDM29_02680 IS256 family transposase K07493 K07493; putative transposase
D PDM29_03600 IS256 family transposase K07493 K07493; putative transposase
D PDM29_07245 IS256 family transposase K07493 K07493; putative transposase
D PDM29_07850 IS256 family transposase K07493 K07493; putative transposase
D PDM29_09295 IS256 family transposase K07493 K07493; putative transposase
D PDM29_13330 IS256 family transposase K07493 K07493; putative transposase
D PDM29_15855 IS256 family transposase K07493 K07493; putative transposase
D PDM29_17330 IS256 family transposase K07493 K07493; putative transposase
D PDM29_18610 IS256 family transposase K07493 K07493; putative transposase
D PDM29_19935 IS256 family transposase K07493 K07493; putative transposase
D PDM29_09535 IS3 family transposase K07497 K07497; putative transposase
D PDM29_17095 DDE-type integrase/transposase/recombinase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D PDM29_12025 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PDM29_01910 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D PDM29_07105 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D PDM29_16100 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D PDM29_16105 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D PDM29_15520 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D PDM29_03635 CitMHS family transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D PDM29_02215 MFS transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family
D PDM29_05555 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D PDM29_13045 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D PDM29_20420 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D PDM29_14730 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D PDM29_03055 dicarboxylate/amino acid:cation symporter K03309 TC.DAACS; dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family
D PDM29_02920 alanine/glycine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D PDM29_02935 alanine/glycine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D PDM29_17460 hypothetical protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D PDM29_10940 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D PDM29_18435 DASS family sodium-coupled anion symporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
D PDM29_09200 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D PDM29_05305 ampE; (GenBank) regulatory signaling modulator protein AmpE K03807 ampE; AmpE protein
D PDM29_11650 typA; (GenBank) translational GTPase TypA K06207 typA; GTP-binding protein
D PDM29_18175 ChrR family anti-sigma-E factor K07167 chrR; putative transcriptional regulator
D PDM29_14335 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D PDM29_14940 PhoH family protein K07175 phoH2; PhoH-like ATPase
D PDM29_04260 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D PDM29_16785 lolA; (GenBank) outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein
D PDM29_11360 lolB; (GenBank) lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB
D PDM29_07065 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D PDM29_16940 hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB
D PDM29_20330 glycine zipper 2TM domain-containing protein K06077 slyB; outer membrane lipoprotein SlyB
D PDM29_14795 peptidoglycan DD-metalloendopeptidase family protein K06194 nlpD; lipoprotein NlpD
D PDM29_03015 outer membrane beta-barrel protein K07275 ompW; outer membrane protein
D PDM29_04450 outer membrane beta-barrel protein K07275 ompW; outer membrane protein
D PDM29_04480 DUF481 domain-containing protein K07283 ydiY; putative salt-induced outer membrane protein
D PDM29_12040 Slp family lipoprotein K07285 slp; outer membrane lipoprotein
D PDM29_02160 AsmA family protein K07290 yhjG; AsmA family protein
D PDM29_14340 HlyD family efflux transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein
D PDM29_04345 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D PDM29_13605 creD; (GenBank) cell envelope integrity protein CreD K06143 creD; inner membrane protein
D PDM29_20585 ccmE; (GenBank) cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D PDM29_20600 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D PDM29_20605 tetratricopeptide repeat protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D PDM29_15625 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D PDM29_14125 phoU; (GenBank) phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D PDM29_17220 hypothetical protein K02039 phoU; phosphate transport system protein
D PDM29_05350 bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D PDM29_07510 glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein
D PDM29_04835 divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D PDM29_16045 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D PDM29_11105 apaG; (GenBank) Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein
D PDM29_14255 bacteriohemerythrin K07216 hr; hemerythrin
D PDM29_17265 ArsO family NAD(P)H-dependent flavin-containing monooxygenase K07222 K07222; putative flavoprotein involved in K+ transport
D PDM29_02395 copper resistance protein B K07233 pcoB; copper resistance protein B
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PDM29_11760 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D PDM29_05795 peptidoglycan-binding protein K03791 K03791; putative chitinase
D PDM29_07645 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D PDM29_14640 group III truncated hemoglobin K06886 glbN; hemoglobin
D PDM29_07450 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D PDM29_18680 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D PDM29_09425 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D PDM29_05315 erpA; (GenBank) iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D PDM29_12600 sufB; (GenBank) Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D PDM29_12590 sufD; (GenBank) Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D PDM29_10920 metal-dependent hydrolase K07038 K07038; inner membrane protein
D PDM29_09315 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D PDM29_11325 YihY family inner membrane protein K07058 K07058; membrane protein
D PDM29_00090 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D PDM29_14700 sulfurtransferase K07146 K07146; UPF0176 protein
D PDM29_16715 hflD; (GenBank) high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein
D PDM29_09895 VOC family protein K04750 phnB; PhnB protein
D PDM29_07915 arsH; (GenBank) arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D PDM29_17240 arsH; (GenBank) arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D PDM29_11045 LemA family protein K03744 lemA; LemA protein
D PDM29_20195 SlyX family protein K03745 slyX; SlyX protein
D PDM29_04670 DUF494 family protein K03747 smg; Smg protein
D PDM29_04615 PH domain-containing protein K08981 K08981; putative membrane protein
D PDM29_02210 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
D PDM29_06960 YchJ family metal-binding protein K09858 K09858; SEC-C motif domain protein
D PDM29_01560 zinc ribbon domain-containing protein YjdM K06193 phnA; protein PhnA
C 99997 Function unknown
D PDM29_06370 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D PDM29_11050 TPM domain-containing protein K06872 K06872; uncharacterized protein
D PDM29_17625 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D PDM29_08375 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D PDM29_05225 ATP/GTP-binding protein K06945 K06945; uncharacterized protein
D PDM29_08795 GTPase K06945 K06945; uncharacterized protein
D PDM29_01680 pdeM; (GenBank) ligase-associated DNA damage response endonuclease PdeM K06953 K06953; uncharacterized protein
D PDM29_18190 FAD-dependent oxidoreductase K06954 K06954; uncharacterized protein
D PDM29_20405 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D PDM29_13090 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein
D PDM29_04910 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D PDM29_18890 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D PDM29_09805 MnmC family methyltransferase K06983 K06983; uncharacterized protein
D PDM29_01190 C39 family peptidase K06992 K06992; uncharacterized protein
D PDM29_08540 ExeM/NucH family extracellular endonuclease K07004 K07004; uncharacterized protein
D PDM29_00930 sulfatase-like hydrolase/transferase K07014 K07014; uncharacterized protein
D PDM29_08550 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D PDM29_07760 alpha/beta fold hydrolase K07019 K07019; uncharacterized protein
D PDM29_09900 VOC family protein K07032 K07032; uncharacterized protein
D PDM29_05395 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D PDM29_06965 TSUP family transporter K07090 K07090; uncharacterized protein
D PDM29_12910 metallophosphoesterase K07098 K07098; uncharacterized protein
D PDM29_17970 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D PDM29_12610 SET domain-containing protein-lysine N-methyltransferase K07117 K07117; uncharacterized protein
D PDM29_10085 NAD(P)H-binding protein K07118 K07118; uncharacterized protein
D PDM29_10705 penicillin-binding protein activator K07121 K07121; uncharacterized protein
D PDM29_05220 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein
D PDM29_01155 DUF418 domain-containing protein K07148 K07148; uncharacterized protein
D PDM29_03345 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein
D PDM29_00105 yidD; (GenBank) membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D PDM29_03270 DUF192 domain-containing protein K09005 K09005; uncharacterized protein
D PDM29_09320 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D PDM29_04070 DUF493 family protein K09158 K09158; uncharacterized protein
D PDM29_00195 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D PDM29_13485 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D PDM29_04610 PH domain-containing protein K09167 K09167; uncharacterized protein
D PDM29_18195 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein
D PDM29_05440 DUF333 domain-containing protein K09712 K09712; uncharacterized protein
D PDM29_20525 YciI family protein K09780 K09780; uncharacterized protein
D PDM29_05595 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D PDM29_03375 YbaN family protein K09790 K09790; uncharacterized protein
D PDM29_20340 DUF456 domain-containing protein K09793 K09793; uncharacterized protein
D PDM29_15320 RnfH family protein K09801 K09801; uncharacterized protein
D PDM29_01270 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D PDM29_03235 UPF0149 family protein K09895 K09895; uncharacterized protein
D PDM29_06375 YcgL domain-containing protein K09902 K09902; uncharacterized protein
D PDM29_01605 DUF2058 domain-containing protein K09912 K09912; uncharacterized protein
D PDM29_07530 DUF480 domain-containing protein K09915 K09915; uncharacterized protein
D PDM29_16760 GNAT family N-acetyltransferase K09919 K09919; uncharacterized protein
D PDM29_19485 DUF1249 domain-containing protein K09920 K09920; uncharacterized protein
D PDM29_04195 DUF484 family protein K09921 K09921; uncharacterized protein
D PDM29_10980 DMT family protein K09922 K09922; uncharacterized protein
D PDM29_08410 DUF2059 domain-containing protein K09924 K09924; uncharacterized protein
D PDM29_14100 putative DNA-binding domain-containing protein K09929 K09929; uncharacterized protein
D PDM29_14105 DUF692 domain-containing protein K09930 K09930; uncharacterized protein
D PDM29_12460 DUF2066 domain-containing protein K09938 K09938; uncharacterized protein
D PDM29_12535 PepSY-associated TM helix domain-containing protein K09939 K09939; uncharacterized protein
D PDM29_01235 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein
D PDM29_04265 DUF1415 domain-containing protein K09941 K09941; uncharacterized protein
D PDM29_19720 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein
D PDM29_00190 TraB/GumN family protein K09973 K09973; uncharacterized protein
D PDM29_11095 DUF1287 domain-containing protein K09974 K09974; uncharacterized protein
D PDM29_12510 HutD family protein K09975 K09975; uncharacterized protein
D PDM29_02400 zf-TFIIB domain-containing protein K09981 K09981; uncharacterized protein
D PDM29_09220 ThuA domain-containing protein K09992 K09992; uncharacterized protein
D PDM29_07640 ribonuclease H-like domain-containing protein K07502 yprB; uncharacterized protein
D PDM29_14725 DUF47 family protein K07220 K07220; uncharacterized protein
D PDM29_09465 mitochondrial fission ELM1 family protein K07276 K07276; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: August 20, 2025