+D Transcription factors KO
#
Transcription Factors - Serratia proteamaculans
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D Spro_0573 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D Spro_2248 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D Spro_0633 transcriptional regulator, AraC family K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D Spro_0837 transcriptional regulator, AraC family K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D Spro_0597 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D Spro_0679 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D Spro_1523 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D Spro_1931 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D Spro_3482 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D Spro_4021 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D Spro_0984 transcriptional regulator, AraC family K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D Spro_2337 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Spro_4236 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Spro_4687 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Spro_3547 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D Spro_1339 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_1341 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_1345 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_1370 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_2466 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_2483 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_2548 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_3048 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_3805 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Spro_4752 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D Spro_0241 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D Spro_0695 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D Spro_4775 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Spro_3925 transcriptional regulator, LysR family K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D Spro_0746 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D Spro_1535 transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D Spro_2656 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Spro_2917 transcriptional regulator, LysR family K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D Spro_2451 transcriptional regulator, LysR family K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D Spro_3394 transcriptional regulator, LysR family K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D Spro_3205 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D Spro_4199 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D Spro_0589 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D Spro_2093 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D Spro_2272 transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D Spro_0647 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Spro_1380 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Spro_3129 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Spro_2206 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D Spro_4393 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D Spro_4856 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D Spro_0608 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D Spro_4764 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D Spro_2527 transcriptional regulator, LysR family K26290 palR; LysR family transcriptional regulator, regulator of pal gene cluster
C DeoR family
D Spro_1631 transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D Spro_4640 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D Spro_2577 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Spro_3849 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Spro_3574 transcriptional regulator, DeoR family K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
C LacI family
D Spro_0102 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_1562 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_2053 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_2679 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_3197 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_3616 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_3832 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_4283 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_4466 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_4896 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spro_0061 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D Spro_4573 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Spro_4790 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Spro_0750 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D Spro_4207 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D Spro_0534 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D Spro_0577 transcriptional regulator, LacI family K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D Spro_2195 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D Spro_4652 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D Spro_3289 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D Spro_1972 transcriptional regulator, LacI family K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D Spro_2271 transcriptional regulator, LacI family K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D Spro_0522 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D Spro_2078 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Spro_2748 Fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D Spro_4012 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Spro_4323 regulatory protein GntR HTH K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D Spro_0041 GntR domain protein K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D Spro_2017 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Spro_3719 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Spro_4220 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Spro_4307 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Spro_3567 transcriptional regulator, GntR family K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D Spro_1408 transcriptional regulator, GntR family K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D Spro_1513 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D Spro_1128 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D Spro_4845 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D Spro_1824 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Spro_2203 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Spro_3184 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Spro_1394 transcriptional regulator, TetR family K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D Spro_4773 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D Spro_1330 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D Spro_4906 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Spro_1462 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Spro_1682 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Spro_2400 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Spro_1106 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D Spro_2046 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D Spro_0066 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D Spro_3050 transcriptional regulator, LuxR family K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D Spro_1517 transcriptional regulator, LuxR family K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D Spro_4637 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D Spro_1540 AAA ATPase K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator
C MarR family
D Spro_2214 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Spro_3741 transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D Spro_2313 transcriptional regulator, MarR family K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D Spro_0129 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Spro_0374 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Spro_1151 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Spro_4517 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
C Fur family
D Spro_1236 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Spro_4457 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D Spro_4491 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Spro_2514 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Spro_3036 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Spro_2122 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D Spro_3928 transcriptional regulator, IclR family K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D Spro_4580 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Spro_2582 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D Spro_3628 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Spro_0437 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Spro_1928 transcriptional regulator, BadM/Rrf2 family K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D Spro_2391 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Spro_1877 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D Spro_2231 transcriptional regulator, XRE family K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D Spro_1915 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Spro_1854 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D Spro_2769 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D Spro_0268 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Spro_4424 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Spro_0676 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D Spro_0470 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D Spro_0738 extracellular solute-binding protein family 5 K11925 sgrR; SgrR family transcriptional regulator
D Spro_0668 transcriptional regulator, XRE family K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D Spro_2066 transcriptional regulator, XRE family K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D Spro_3217 transcriptional regulator, XRE family K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D Spro_0567 transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D Spro_0317 protein of unknown function DUF955 K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Spro_4949 helix-turn-helix domain protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Spro_2392 PAS modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Spro_2411 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Spro_3032 transcriptional regulator, NifA subfamily, Fis Family K12266 norR; anaerobic nitric oxide reductase transcription regulator
D Spro_2440 transcriptional regulator, NifA subfamily, Fis Family K15836 fhlA; formate hydrogenlyase transcriptional activator
D Spro_1140 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D Spro_1296 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D Spro_0038 YheO domain protein K21829 dauR; D-arginine utilization repressor
D Spro_1852 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator
D Spro_2974 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator
D Spro_1951 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D Spro_4787 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D Spro_2931 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Spro_0055 transcriptional regulator, CopG family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D Spro_2325 transcriptional antiterminator, BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D Spro_1093 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Spro_2032 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Spro_4924 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Spro_4926 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Spro_2465 glycerol-3-phosphate responsive antiterminator, GlpP K02443 glpP; glycerol uptake operon antiterminator
D Spro_0256 transcriptional acivator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D Spro_0468 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D Spro_1225 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D Spro_2283 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D Spro_0074 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor
D Spro_3122 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Spro_2617 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D Spro_3769 transcriptional regulator, CadC K03765 cadC; transcriptional activator of cad operon
D Spro_3510 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor
D Spro_3083 transcriptional regulator, PaaX family K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D Spro_2625 sigma54 specific transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator
D Spro_2622 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Spro_4269 GAF modulated sigma54 specific transcriptional regulator, Fis family K05880 dhaR; transcriptional activator for dhaKLM operon
D Spro_4382 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Spro_3870 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Spro_3885 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Spro_1466 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D Spro_4027 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Spro_1939 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Spro_3985 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Spro_1071 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D Spro_0966 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
D Spro_0752 MraZ protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025
#
Classification taken and modified from TRANSFAC 7.0