+D Transcription factors KO #

  Transcription Factors - Sphingopyxis sp. EG6

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SPYCW_3562 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D SPYCW_2872 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D SPYCW_1409 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPYCW_1540 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPYCW_1684 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPYCW_2800 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPYCW_1592 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SPYCW_0981 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase C DeoR family C LacI family D SPYCW_3130 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D SPYCW_0860 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SPYCW_3525 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SPYCW_2176 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator C TetR/AcrR family D SPYCW_0744 transcriptional regulator TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SPYCW_3729 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SPYCW_0064 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor C Lrp/AsnC family D SPYCW_0180 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D SPYCW_0181 transcriptional regulator AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D SPYCW_0317 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPYCW_0693 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPYCW_1265 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPYCW_3312 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPYCW_3443 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPYCW_3182 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D SPYCW_3582 LuxR family transcriptional regulator K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR C MarR family C MerR family D SPYCW_1933 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D SPYCW_3489 transcriptional regulator MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D SPYCW_3497 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D SPYCW_3660 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D SPYCW_0419 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D SPYCW_2449 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SPYCW_2768 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D SPYCW_0312 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SPYCW_0501 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SPYCW_1851 Crp/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SPYCW_2044 Crp/FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D SPYCW_1731 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D SPYCW_2959 arsR; (GenBank) ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D SPYCW_2272 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D SPYCW_1792 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D SPYCW_1208 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D SPYCW_0287 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D SPYCW_0640 CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D SPYCW_1343 biotin-acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SPYCW_3155 sigma-54 dependent trancsriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D SPYCW_0891 Cro/CI family transcriptional regulator K07727 K07727; putative transcriptional regulator D SPYCW_0505 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D SPYCW_0823 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D SPYCW_1922 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D SPYCW_3075 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D SPYCW_3444 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D SPYCW_0780 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D SPYCW_0724 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_0867 putative transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_1434 nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_1991 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_2412 ParB family chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_3223 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_3651 plasmid stabilization protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPYCW_1037 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D SPYCW_1045 hrcA; (GenBank) heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor D SPYCW_2834 sigma-54 dependent trancsriptional regulator K03974 pspF; psp operon transcriptional activator D SPYCW_1553 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D SPYCW_0765 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein D SPYCW_0255 negative transcriptional regulator K07734 paiB; transcriptional regulator D SPYCW_2777 UPF0301 protein EBMC1_03225 K07735 algH; putative transcriptional regulator D SPYCW_1083 dksA; (GenBank) dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D SPYCW_1139 nrdR; (GenBank) transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D SPYCW_0057 rtcR; (GenBank) sigma-54 interacting protein K14414 rtcR; transcriptional regulatory protein RtcR D SPYCW_2210 hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0