+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingobium sp. EP60837

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D EP837_00117 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E EP837_01928 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EP837_03573 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E EP837_01540 mutY; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EP837_00014 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D EP837_00644 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EP837_01078 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D EP837_00783 DNA-3-methyladenine glycosylase II K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D EP837_00117 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D EP837_01138 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D EP837_01761 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E EP837_01928 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EP837_00312 uncharacterized protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E EP837_01657 DNA-directed DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E EP837_00137 DNA-directed DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E EP837_01904 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E EP837_03573 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E EP837_01540 mutY; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EP837_01074 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E EP837_00014 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E EP837_01140 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E EP837_01480 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E EP837_00748 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E EP837_01166 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E EP837_00603 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E EP837_00905 dpo1; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E EP837_02879 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A E EP837_02248 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A E EP837_01150 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B E EP837_02449 UvrABC system protein K03703 uvrC; excinuclease ABC subunit C E EP837_00272 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EP837_04034 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EP837_00905 dpo1; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E EP837_00603 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F EP837_01969 rpoB; DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F EP837_01968 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F EP837_01247 rpoA; DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F EP837_01925 rpoZ; DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F EP837_00404 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] F EP837_03575 UvrABC system protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E EP837_01484 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E EP837_00084 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E EP837_01546 xseA; Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E EP837_00636 xseB; Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E EP837_00133 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E EP837_01159 dnaN; DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E EP837_00816 holC; DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E EP837_01442 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E EP837_00209 holB; DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E EP837_02869 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E EP837_01278 dnaQ; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E EP837_01464 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E EP837_00293 dnaX; DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E EP837_00603 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E EP837_00272 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EP837_04034 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EP837_03693 hypothetical protein K03111 ssb; single-strand DNA-binding protein E EP837_01318 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E EP837_00003 hypothetical protein K03111 ssb; single-strand DNA-binding protein E EP837_03967 hypothetical protein K03111 ssb; single-strand DNA-binding protein E EP837_04052 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E EP837_04070 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E EP837_01173 Protein RecA K03553 recA; recombination protein RecA E EP837_01528 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E EP837_01527 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EP837_00938 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E EP837_00782 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E EP837_01710 Nuclease SbcCD subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E EP837_01711 Nuclease SbcCD subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E EP837_01173 Protein RecA K03553 recA; recombination protein RecA E EP837_02213 DNA repair protein RadA like protein K04485 radA; DNA repair protein RadA/Sms E EP837_01796 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E EP837_00402 recG; DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E EP837_01166 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E EP837_02380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E EP837_00774 Recombination protein RecR K06187 recR; recombination protein RecR E EP837_00604 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E EP837_01528 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E EP837_01527 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EP837_00938 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E EP837_00198 addA; ATP-dependent helicase/nuclease subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E EP837_01738 DNA helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E EP837_00197 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] E EP837_01739 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E EP837_02636 uncharacterized protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E EP837_01710 Nuclease SbcCD subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E EP837_01711 Nuclease SbcCD subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E EP837_01948 uncharacterized protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E EP837_02331 Non-like proteinous end joining protein Ku K10979 ku; DNA end-binding protein Ku E EP837_03020 Non-like proteinous end joining protein Ku K10979 ku; DNA end-binding protein Ku E EP837_02925 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E EP837_02332 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E EP837_03016 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F EP837_00253 gyrA; DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F EP837_01415 gyrB; DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F EP837_02905 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F EP837_01860 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F EP837_00159 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F EP837_03878 Integration host factor subunit alpha K03530 hupB; DNA-binding protein HU-beta F EP837_00290 DNA-binding protein HRL18 K03530 hupB; DNA-binding protein HU-beta F EP837_03457 DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F EP837_01166 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F EP837_02380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F EP837_00774 Recombination protein RecR K06187 recR; recombination protein RecR F EP837_00603 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F EP837_01826 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F EP837_00281 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F EP837_01636 recQ; DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F EP837_02879 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A F EP837_02248 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A F EP837_01150 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D EP837_01493 dpo4; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D EP837_01173 Protein RecA K03553 recA; recombination protein RecA D EP837_02410 lexA; Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D EP837_00604 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D EP837_01755 Protein ImuA K14160 imuA; protein ImuA D EP837_01171 Protein ImuB K14161 imuB; protein ImuB D EP837_03014 Protein ImuB K14161 imuB; protein ImuB D EP837_01754 Protein ImuB K14161 imuB; protein ImuB D EP837_01170 DNA-directed DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D EP837_03015 DNA-directed DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D EP837_01753 DNA-directed DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D EP837_03693 hypothetical protein K03111 ssb; single-strand DNA-binding protein D EP837_01318 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D EP837_00003 hypothetical protein K03111 ssb; single-strand DNA-binding protein D EP837_03967 hypothetical protein K03111 ssb; single-strand DNA-binding protein D EP837_04052 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D EP837_04070 hypothetical protein K03111 ssb; single-strand DNA-binding protein D EP837_00915 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D EP837_01830 dinG; DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D EP837_01420 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D EP837_01783 putative ATP-dependent helicase lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D EP837_00644 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EP837_01078 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D EP837_01811 nrdA; Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D EP837_01813 nrdB; Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024