+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhizorhabdus wittichii DC-6

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HY78_11280 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HY78_20325 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HY78_09525 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HY78_01685 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HY78_27145 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D HY78_14875 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D HY78_23595 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HY78_00045 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HY78_11280 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HY78_20325 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HY78_20940 bifunctional transcriptional activator/DNA repair protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D HY78_23915 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D HY78_23930 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E HY78_09525 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HY78_04430 DNA-deoxyinosine glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E HY78_03670 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HY78_20465 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HY78_23940 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HY78_13380 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HY78_01685 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HY78_01735 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HY78_00015 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E HY78_27145 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HY78_04670 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HY78_05305 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E HY78_01455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HY78_01490 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HY78_25835 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HY78_10030 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E HY78_01745 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E HY78_02855 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E HY78_20515 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HY78_25100 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HY78_25835 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E HY78_01490 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HY78_06960 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HY78_06965 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HY78_19940 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HY78_06640 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HY78_11700 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E HY78_25615 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HY78_09815 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HY78_27835 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HY78_13815 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HY78_11525 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HY78_11245 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HY78_25650 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HY78_11355 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HY78_02190 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E HY78_27655 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HY78_01490 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HY78_20515 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HY78_25100 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HY78_13255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HY78_30610 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HY78_14575 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HY78_28615 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HY78_25280 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HY78_28705 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HY78_00310 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HY78_24135 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E HY78_14815 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HY78_14825 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HY78_14810 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HY78_27070 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E HY78_24135 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E HY78_03705 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E HY78_11500 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E HY78_18970 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HY78_01455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HY78_02845 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HY78_03960 recombination protein RecR K06187 recR; recombination protein RecR E HY78_01480 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HY78_14815 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HY78_14825 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HY78_14810 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E HY78_12110 double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E HY78_06570 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E HY78_04320 Ku protein K10979 ku; DNA end-binding protein Ku E HY78_04315 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HY78_02490 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HY78_11490 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HY78_05110 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F HY78_10755 topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HY78_27715 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F HY78_13915 integration host factor K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HY78_01455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HY78_02845 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HY78_03960 recombination protein RecR K06187 recR; recombination protein RecR F HY78_01490 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F HY78_06480 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F HY78_13465 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F HY78_16035 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HY78_10030 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F HY78_01745 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HY78_06285 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D HY78_24135 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D HY78_09475 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D HY78_01480 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HY78_30230 damage-inducible mutagenesis protein K14160 imuA; protein ImuA D HY78_20965 hypothetical protein K14160 imuA; protein ImuA D HY78_30235 nucleotidyltransferase K14161 imuB; protein ImuB D HY78_20970 nucleotidyltransferase K14161 imuB; protein ImuB D HY78_30240 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D HY78_20975 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D HY78_13255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HY78_30610 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HY78_14575 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HY78_28615 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HY78_25280 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HY78_28705 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HY78_12730 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HY78_06440 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D HY78_11540 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D HY78_23595 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HY78_00045 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HY78_19030 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HY78_19020 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024