+E Transcription factors KO
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Transcription Factors - Sphingopyxis sp. 113P3
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D LH20_06760 cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LH20_17815 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LH20_04670 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D LH20_03790 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D LH20_16880 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D LH20_06835 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D LH20_16560 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D LH20_01900 LysR family transcriptional regulator, glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D LH20_09570 LysR family transcriptional regulator, glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D LH20_10780 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D LH20_12280 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D LH20_09840 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D LH20_21990 hyaluronan synthase K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D LH20_07165 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D LH20_19260 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D LH20_19510 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D LH20_19555 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D LH20_19590 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
C DeoR family
C LacI family
D LH20_18750 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LH20_06990 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D LH20_14935 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D LH20_19715 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D LH20_13155 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D LH20_00345 GntR family transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D LH20_04150 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D LH20_21650 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D LH20_19065 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D LH20_00150 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D LH20_06500 hypothetical protein K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D LH20_18020 TetR family transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
C Lrp/AsnC family
D LH20_07460 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D LH20_10510 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D LH20_21240 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D LH20_08375 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D LH20_00330 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D LH20_19920 hypothetical protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D LH20_07380 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D LH20_20415 LuxR family transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
D LH20_06700 hypothetical protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D LH20_14125 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D LH20_00210 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D LH20_20430 transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D LH20_20330 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D LH20_02065 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D LH20_09385 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D LH20_02450 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D LH20_16065 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D LH20_08975 CRP/FNR family transcriptional regulator, anaerobic regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D LH20_13770 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D LH20_09955 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D LH20_13000 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D LH20_13015 cyclic nucleotide-binding protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D LH20_03460 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D LH20_20055 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D LH20_22555 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D LH20_17270 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D LH20_11695 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D LH20_09805 transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D LH20_16300 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D LH20_02220 CopY family transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D LH20_11460 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D LH20_18925 sigma-54 dependent transcription regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D LH20_06405 DNA-binding protein K07726 K07726; putative transcriptional regulator
D LH20_06440 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator
D LH20_16040 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D LH20_10365 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator
D LH20_02680 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator
D LH20_17785 hypothetical protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D LH20_07455 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D LH20_06215 transcriptional regulator K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D LH20_20230 transcriptional regulator K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D LH20_02485 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D LH20_05310 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_05580 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_20685 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_20890 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_01765 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_20395 plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_17225 chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_22020 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_22620 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_22750 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LH20_08695 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D LH20_08740 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D LH20_16755 ATPase AAA K03974 pspF; psp operon transcriptional activator
D LH20_15055 hypothetical protein K03973 pspC; phage shock protein C
D LH20_16735 phage-shock protein K03973 pspC; phage shock protein C
D LH20_12365 elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase
D LH20_06050 DNA-binding protein K07733 alpA; prophage regulatory protein
D LH20_01995 KUP system potassium uptake protein K07733 alpA; prophage regulatory protein
D LH20_17165 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D LH20_09270 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D LH20_01430 negative transcriptional regulator K07734 paiB; transcriptional regulator
D LH20_04155 transcriptional regulator K07734 paiB; transcriptional regulator
D LH20_09320 transcriptional regulator K07734 paiB; transcriptional regulator
D LH20_16455 hypothetical protein K07735 algH; putative transcriptional regulator
D LH20_02880 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D LH20_07530 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D LH20_14560 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0