+F Repair protein KO #

  DNA Repair and Recombination Proteins - Flagellimonas maritima

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HME9304_01655 mgmT; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HME9304_03335 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D HME9304_00246 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D HME9304_02925 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HME9304_03205 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HME9304_01184 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HME9304_03002 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D HME9304_02505 nuclease S(1) K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D HME9304_00676 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HME9304_00650 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HME9304_01587 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HME9304_01655 mgmT; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HME9304_03335 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D HME9304_00246 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D HME9304_02925 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D HME9304_03337 (6-4) photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E HME9304_03205 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HME9304_01184 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HME9304_01142 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HME9304_03002 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HME9304_01211 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E HME9304_01421 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HME9304_03417 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HME9304_02097 dpo1; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HME9304_03264 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A E HME9304_02999 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A E HME9304_00411 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B E HME9304_01264 UvrABC system protein K03703 uvrC; excinuclease ABC subunit C E HME9304_03276 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HME9304_02097 dpo1; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E HME9304_03417 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HME9304_02487 rpoB; DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HME9304_02488 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HME9304_00778 rpoA; DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HME9304_01882 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HME9304_02188 DNA mismatch repair protein MSH3 K03555 mutS; DNA mismatch repair protein MutS E HME9304_03207 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HME9304_00309 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E HME9304_01814 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HME9304_01973 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HME9304_02888 dnaN; DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HME9304_03269 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HME9304_01524 holB; DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HME9304_00736 dnaQ; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HME9304_02527 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HME9304_03393 dinG; DNA helicase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HME9304_02903 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HME9304_02703 dnaX; DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HME9304_03417 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HME9304_03276 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HME9304_00638 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HME9304_01838 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HME9304_01867 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HME9304_01183 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HME9304_01616 XorII very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HME9304_01604 Protein RecA K03553 recA; recombination protein RecA E HME9304_02124 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E HME9304_02118 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HME9304_01991 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HME9304_00038 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E HME9304_01604 Protein RecA K03553 recA; recombination protein RecA E HME9304_01209 DNA repair protein RadA like protein K04485 radA; DNA repair protein RadA/Sms E HME9304_00313 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E HME9304_03284 DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HME9304_01421 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HME9304_01271 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HME9304_02524 Recombination protein RecR K06187 recR; recombination protein RecR E HME9304_03405 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HME9304_02124 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E HME9304_02118 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HME9304_01991 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E HME9304_00748 uncharacterized protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HME9304_02767 gyrA; DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HME9304_00565 gyrB; DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HME9304_00971 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F HME9304_00185 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HME9304_01185 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F HME9304_02912 DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HME9304_01421 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HME9304_01271 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HME9304_02524 Recombination protein RecR K06187 recR; recombination protein RecR F HME9304_03417 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HME9304_00353 recQ; DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HME9304_02914 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HME9304_03264 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A F HME9304_02999 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A F HME9304_00411 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HME9304_01813 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HME9304_01338 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HME9304_00593 dpo4; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HME9304_03352 Protein ImpB K03502 umuC; DNA polymerase V D HME9304_03353 umuD; Protein ImpA K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D HME9304_01604 Protein RecA K03553 recA; recombination protein RecA D HME9304_03405 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HME9304_00592 dnaE; DNA-directed DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D HME9304_00638 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HME9304_01838 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HME9304_01867 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HME9304_01183 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HME9304_01188 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HME9304_01887 putative ATP-dependent helicase lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D HME9304_00676 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HME9304_00650 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HME9304_01587 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HME9304_01711 nrdA; Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HME9304_01709 nrdB; Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D HME9304_00318 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024