+E Ribosome biogenesis KO
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Ribosome Biogenesis - Salmonella enterica subsp. enterica serovar Paratyphi B
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D SPAB_05483 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SPAB_00346 hypothetical protein K03595 era; GTPase
C SPAB_04118 hypothetical protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SPAB_00237 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C SPAB_04099 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
C SPAB_03165 hypothetical protein K03625 nusB; transcription antitermination protein NusB
C SPAB_05135 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SPAB_00778 hypothetical protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SPAB_00115 hypothetical protein K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SPAB_04249 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SPAB_05733 hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SPAB_04437 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SPAB_03859 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SPAB_01359 hypothetical protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D SPAB_04817 hypothetical protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SPAB_00154 hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SPAB_04074 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SPAB_04461 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D SPAB_01379 hypothetical protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SPAB_05503 hypothetical protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SPAB_04112 hypothetical protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D SPAB_02677 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D SPAB_04019 hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D SPAB_02911 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SPAB_02477 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SPAB_04465 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D SPAB_02497 hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D SPAB_03709 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D SPAB_00414 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SPAB_03678 hypothetical protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SPAB_02607 hypothetical protein K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D SPAB_00121 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SPAB_01525 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SPAB_02338 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D SPAB_03373 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SPAB_02277 hypothetical protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D SPAB_05187 hypothetical protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D SPAB_00327 hypothetical protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C SPAB_05735 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SPAB_02362 hypothetical protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SPAB_02614 hypothetical protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C SPAB_01670 hypothetical protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C SPAB_03388 hypothetical protein K02860 rimM; 16S rRNA processing protein RimM
C SPAB_02645 hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C SPAB_02542 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C SPAB_04214 hypothetical protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C SPAB_00584 hypothetical protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C SPAB_02285 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C SPAB_02340 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C SPAB_04198 hypothetical protein K08301 rng; ribonuclease G [EC:3.1.26.-]
C SPAB_03862 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C SPAB_01610 hypothetical protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C SPAB_04091 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C SPAB_00333 hypothetical protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C SPAB_00346 hypothetical protein K03595 era; GTPase
C SPAB_05482 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SPAB_00422 hypothetical protein K03977 engA; GTPase
C SPAB_04118 hypothetical protein K03979 obgE; GTPase [EC:3.6.5.-]
C SPAB_05495 hypothetical protein K03665 hflX; GTPase
B Other maturation factors
C SPAB_04243 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SPAB_04643 hypothetical protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SPAB_04097 hypothetical protein K02834 rbfA; ribosome-binding factor A
C SPAB_04100 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SPAB_03023 hypothetical protein K14761 rlbA; ribosome-associated protein
C SPAB_02910 hypothetical protein K09710 ybeB; ribosome-associated protein
C SPAB_02880 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SPAB_04113 hypothetical protein K07574 yhbY; RNA-binding protein
C SPAB_04583 hypothetical protein K14762 yibL; ribosome-associated protein
C SPAB_05586 hypothetical protein K09889 yjgA; ribosome-associated protein
C SPAB_04139 hypothetical protein K05808 hpf; ribosome hibernation promoting factor
C SPAB_03376 hypothetical protein K05809 raiA; ribosome-associated inhibitor A
C SPAB_01734 hypothetical protein K02972 sra; stationary-phase-induced ribosome-associated protein
C SPAB_01442 hypothetical protein K06942 ychF; ribosome-binding ATPase
C SPAB_02333 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024