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Transcription Machinery - Streptomyces rapamycinicus
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E M271_27945 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E M271_21340 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E M271_21685 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E M271_21680 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E M271_10175 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E M271_14880 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E M271_33080 RNA polymerase sigma70 K03086 rpoD; RNA polymerase primary sigma factor
E M271_05740 RNA polymerase subunit sigma24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_06180 RNA polymerase sigma70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_06235 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_06895 RNA polymerase sigma 70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_07430 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_08400 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_12780 RNA polymerase sigma factor SigK K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_16425 RNA polymerase sigma24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_17825 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_18185 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_21035 RNA polymerase sigma factor SigD K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_22495 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_25200 RNA polymerase sigma factor SigM K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_26990 RNA polymerase sigma factor SigL K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_28220 RNA polymerase sigma70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_28645 RNA polymerase sigma70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_30030 RNA polymerase sigma factor SigL K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_36160 RNA polymerase K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_45530 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_46785 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E M271_06040 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_07550 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_13030 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_17660 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_25940 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_25945 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_26875 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_29335 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_42015 hypothetical protein K03090 sigB; RNA polymerase sigma-B factor
E M271_47655 RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E M271_15695 RNA polymerase sigma70 K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E M271_15440 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
E M271_10235 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
E M271_21715 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E M271_21315 serine/threonine protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E M271_21320 anti-anti-sigma factor K17762 rsbS; rsbT antagonist protein RsbS
E M271_21325 anti-anti-sigma factor K17763 rsbR; rsbT co-antagonist protein RsbR
E M271_21305 translation initiation factor IF-2 K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E M271_17595 hypothetical protein K04749 rsbV; anti-sigma B factor antagonist
E M271_17600 sulfate transporter K04749 rsbV; anti-sigma B factor antagonist
E M271_26555 anti-sigma B factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E M271_17655 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E M271_25590 anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E M271_25780 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E M271_02730 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
E M271_35985 DNA-binding protein K06204 dksA; RNA polymerase-binding transcription factor
E M271_44960 suppressor protein DnaK K06204 dksA; RNA polymerase-binding transcription factor
E M271_19145 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E M271_17150 transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 17, 2025