+F Repair protein KO #

  DNA Repair and Recombination Proteins - Selenomonas ruminantium subsp. lactilytica

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SELR_pSRC201070 putative methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SELR_27240 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SELR_16470 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SELR_10060 nth; putative DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SELR_02560 mutX; putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SELR_pSRC101400 putative NUDIX (nucleoside diphosphate linked to some other moiety X) hydrolases K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SELR_pSRC200550 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SELR_15950 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SELR_pSRC300740 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SELR_pSRC400850 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SELR_pSRC201070 putative methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SELR_27240 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SELR_16470 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SELR_15040 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SELR_10060 nth; putative DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SELR_16280 xthA; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SELR_pSRC101720 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E SELR_09470 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E SELR_11810 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SELR_pSRC100790 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SELR_11800 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SELR_19110 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SELR_15980 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SELR_19310 putative helicase UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SELR_pSRC101490 putative ATP-dependent DNA helicase C-terminal region fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SELR_21670 rpoB; putative DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SELR_21660 rpoC; putative DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SELR_07140 rpoA; putative DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SELR_21930 rpoE; putative DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F SELR_15720 rpoZ; putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SELR_21900 mfd; putative transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SELR_10410 mutS; putative DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E SELR_15570 mutS2; putative MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SELR_10420 mutL; putative DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SELR_12140 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SELR_12150 xseB; putative exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SELR_19450 dnaE; putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SELR_pSRC300040 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SELR_pSRC400580 dnaE; putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SELR_15010 polC; putative DNA polymerase III polC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SELR_00020 dnaN; putative DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SELR_19160 holA; putative DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SELR_24410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SELR_11040 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SELR_21570 dnaQ; putative DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SELR_04560 dnaX; putative DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SELR_15980 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SELR_19310 putative helicase UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SELR_pSRC101490 putative ATP-dependent DNA helicase C-terminal region fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SELR_12590 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SELR_13440 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SELR_21320 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SELR_pSRC400870 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SELR_pSRC400890 dam; putative site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SELR_03940 recD; putative exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SELR_22840 recA; putative recombination protein RecA K03553 recA; recombination protein RecA E SELR_10940 ruvA; putative Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SELR_10950 ruvB; putative Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SELR_10500 ruvC; putative crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SELR_pSRC300860 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E SELR_20530 priA; putative primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SELR_27890 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SELR_27880 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SELR_22840 recA; putative recombination protein RecA K03553 recA; recombination protein RecA E SELR_16500 radA; putative DNA repair protein RadA homolog K04485 radA; DNA repair protein RadA/Sms E SELR_00040 recF; putative DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E SELR_11460 recG; putative ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SELR_09470 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SELR_09720 recO; putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SELR_04700 recR; putative recombination protein RecR K06187 recR; recombination protein RecR E SELR_12210 recN; putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SELR_10940 ruvA; putative Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SELR_10950 ruvB; putative Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SELR_10500 ruvC; putative crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E SELR_08560 addA; putative ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SELR_08550 addB; putative ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E SELR_09380 putative CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E SELR_27890 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SELR_27880 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SELR_00330 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SELR_00070 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SELR_05290 topA; putative DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SELR_12940 hup; putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F SELR_21800 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SELR_09470 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SELR_09720 recO; putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SELR_04700 recR; putative recombination protein RecR K06187 recR; recombination protein RecR F SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SELR_10640 putative helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SELR_21260 recQ; putative ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SELR_11810 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SELR_pSRC100790 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SELR_11800 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SELR_10450 dinB; putative DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SELR_13080 putative DNA-damage repair protein K03502 umuC; DNA polymerase V D SELR_pSRC102270 putative DNA repair polymerase K03502 umuC; DNA polymerase V C Other SOS response factors D SELR_22840 recA; putative recombination protein RecA K03553 recA; recombination protein RecA D SELR_12210 recN; putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SELR_12590 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SELR_13440 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SELR_21320 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SELR_pSRC400870 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SELR_22830 recX; putative regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D SELR_02560 mutX; putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SELR_pSRC101400 putative NUDIX (nucleoside diphosphate linked to some other moiety X) hydrolases K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SELR_pSRC200550 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SELR_15950 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SELR_pSRC300740 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SELR_pSRC400850 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SELR_pSRC300820 putative vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D SELR_16130 putative phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024