+F Repair protein KO
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DNA Repair and Recombination Proteins - Selenomonas ruminantium subsp. lactilytica
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SELR_pSRC201070 putative methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E SELR_27240 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELR_16470 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SELR_10060 nth; putative DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SELR_02560 mutX; putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELR_pSRC101400 putative NUDIX (nucleoside diphosphate linked to some other moiety X) hydrolases K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELR_pSRC200550 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELR_15950 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELR_pSRC300740 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELR_pSRC400850 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SELR_pSRC201070 putative methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E SELR_27240 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SELR_16470 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SELR_15040 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SELR_10060 nth; putative DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SELR_16280 xthA; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SELR_pSRC101720 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E SELR_09470 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SELR_11810 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E SELR_pSRC100790 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E SELR_11800 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E SELR_19110 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E SELR_15980 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SELR_19310 putative helicase UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SELR_pSRC101490 putative ATP-dependent DNA helicase C-terminal region fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SELR_21670 rpoB; putative DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SELR_21660 rpoC; putative DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SELR_07140 rpoA; putative DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SELR_21930 rpoE; putative DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F SELR_15720 rpoZ; putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F SELR_21900 mfd; putative transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SELR_10410 mutS; putative DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E SELR_15570 mutS2; putative MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E SELR_10420 mutL; putative DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E SELR_12140 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E SELR_12150 xseB; putative exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E SELR_19450 dnaE; putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SELR_pSRC300040 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SELR_pSRC400580 dnaE; putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SELR_15010 polC; putative DNA polymerase III polC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E SELR_00020 dnaN; putative DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SELR_19160 holA; putative DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E SELR_24410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SELR_11040 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SELR_21570 dnaQ; putative DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SELR_04560 dnaX; putative DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SELR_15980 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SELR_19310 putative helicase UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SELR_pSRC101490 putative ATP-dependent DNA helicase C-terminal region fragment K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SELR_12590 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E SELR_13440 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E SELR_21320 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E SELR_pSRC400870 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E SELR_pSRC400890 dam; putative site-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SELR_03940 recD; putative exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E SELR_22840 recA; putative recombination protein RecA K03553 recA; recombination protein RecA
E SELR_10940 ruvA; putative Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E SELR_10950 ruvB; putative Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SELR_10500 ruvC; putative crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SELR_pSRC300860 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E SELR_20530 priA; putative primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E SELR_27890 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E SELR_27880 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E SELR_22840 recA; putative recombination protein RecA K03553 recA; recombination protein RecA
E SELR_16500 radA; putative DNA repair protein RadA homolog K04485 radA; DNA repair protein RadA/Sms
E SELR_00040 recF; putative DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E SELR_11460 recG; putative ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SELR_09470 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E SELR_09720 recO; putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E SELR_04700 recR; putative recombination protein RecR K06187 recR; recombination protein RecR
E SELR_12210 recN; putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E SELR_10940 ruvA; putative Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E SELR_10950 ruvB; putative Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SELR_10500 ruvC; putative crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E SELR_08560 addA; putative ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E SELR_08550 addB; putative ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E SELR_09380 putative CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E SELR_27890 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E SELR_27880 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SELR_00330 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SELR_00070 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SELR_05290 topA; putative DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F SELR_12940 hup; putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F SELR_21800 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SELR_09470 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F SELR_09720 recO; putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F SELR_04700 recR; putative recombination protein RecR K06187 recR; recombination protein RecR
F SELR_15970 lig; putative DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F SELR_10640 putative helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SELR_21260 recQ; putative ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SELR_11810 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F SELR_pSRC100790 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F SELR_11800 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SELR_10450 dinB; putative DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SELR_13080 putative DNA-damage repair protein K03502 umuC; DNA polymerase V
D SELR_pSRC102270 putative DNA repair polymerase K03502 umuC; DNA polymerase V
C Other SOS response factors
D SELR_22840 recA; putative recombination protein RecA K03553 recA; recombination protein RecA
D SELR_12210 recN; putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SELR_12590 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SELR_13440 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SELR_21320 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SELR_pSRC400870 ssb; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SELR_22830 recX; putative regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D SELR_02560 mutX; putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELR_pSRC101400 putative NUDIX (nucleoside diphosphate linked to some other moiety X) hydrolases K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELR_pSRC200550 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SELR_15950 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELR_pSRC300740 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELR_pSRC400850 dut; putative deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SELR_pSRC300820 putative vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D SELR_16130 putative phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024