+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingomonas sanxanigenens

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NX02_25400 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NX02_10615 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NX02_23445 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NX02_24085 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NX02_14505 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D NX02_28960 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D NX02_10835 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NX02_29740 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NX02_25400 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D NX02_08960 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D NX02_25185 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D NX02_10615 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D NX02_23125 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E NX02_23445 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NX02_28320 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NX02_29510 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NX02_11145 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NX02_22335 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E NX02_24085 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NX02_27165 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E NX02_29770 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NX02_14505 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NX02_17830 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NX02_01880 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NX02_25970 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E NX02_13060 hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E NX02_20330 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NX02_27060 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E NX02_25745 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E NX02_24655 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E NX02_16965 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E NX02_08870 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E NX02_11025 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NX02_06615 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NX02_25745 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E NX02_27060 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NX02_06660 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NX02_06665 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NX02_26495 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NX02_25095 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NX02_12510 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NX02_23180 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E NX02_05515 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E NX02_26370 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E NX02_22510 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E NX02_04800 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NX02_26815 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NX02_12330 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E NX02_25365 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NX02_11740 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NX02_25445 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NX02_07625 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E NX02_04970 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E NX02_27060 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NX02_11025 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NX02_06615 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NX02_28030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E NX02_p0075 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NX02_06865 recombinase RecA K03553 recA; recombination protein RecA E NX02_29065 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E NX02_28990 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NX02_29070 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E NX02_09030 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E NX02_06865 recombinase RecA K03553 recA; recombination protein RecA E NX02_10775 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E NX02_25310 hypothetical protein K03629 recF; DNA replication and repair protein RecF E NX02_12500 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NX02_20330 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NX02_08880 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E NX02_10605 recombinase RecR K06187 recR; recombination protein RecR E NX02_20775 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) E NX02_29065 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E NX02_28990 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NX02_29070 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E NX02_08520 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E NX02_08515 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E NX02_03160 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E NX02_28535 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E NX02_27125 hypothetical protein K10979 ku; DNA end-binding protein Ku E NX02_01905 hypothetical protein K10979 ku; DNA end-binding protein Ku E NX02_27130 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E NX02_01885 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NX02_15460 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NX02_28045 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F NX02_14945 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F NX02_29725 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F NX02_08380 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta F NX02_17395 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NX02_20330 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NX02_08880 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F NX02_10605 recombinase RecR K06187 recR; recombination protein RecR F NX02_27060 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F NX02_25580 transcriptional regulator K04764 ihfA; integration host factor subunit alpha F NX02_17920 transcriptional regulator K05788 ihfB; integration host factor subunit beta E Supressor F NX02_23400 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NX02_24655 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F NX02_16965 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NX02_04700 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D NX02_08855 type VI secretion protein ImpB K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D NX02_06865 recombinase RecA K03553 recA; recombination protein RecA D NX02_27070 umuDC operon protein-like protein K01356 lexA; repressor LexA [EC:3.4.21.88] D NX02_29215 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D NX02_19285 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D NX02_20775 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) D NX02_02130 hypothetical protein K14160 imuA; protein ImuA D NX02_25145 hypothetical protein K14160 imuA; protein ImuA D NX02_02135 hypothetical protein K14161 imuB; protein ImuB D NX02_25140 hypothetical protein K14161 imuB; protein ImuB D NX02_02140 hypothetical protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NX02_25135 hypothetical protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D NX02_28030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NX02_p0075 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NX02_01535 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NX02_25595 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D NX02_25985 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D NX02_10835 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NX02_29740 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NX02_28480 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NX02_28475 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024