+F Repair protein KO #

  DNA Repair and Recombination Proteins - Shewanella sediminis

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Ssed_2903 Methylated-DNA--(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Ssed_3688 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Ssed_1219 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Ssed_2038 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors E Ssed_0374 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Ssed_0419 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Ssed_2716 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Ssed_0383 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Ssed_2903 Methylated-DNA--(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Ssed_3688 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Ssed_2904 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Ssed_1219 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Ssed_0016 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Ssed_0117 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Ssed_2038 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Ssed_1668 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E Ssed_1179 Deoxyribonuclease IV (phage-T(4)-induced) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Ssed_0895 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Ssed_1738 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Ssed_0096 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Ssed_4027 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Ssed_2046 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Ssed_2454 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Ssed_0467 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Ssed_4241 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Ssed_0096 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E Ssed_1738 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Ssed_4324 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Ssed_4323 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Ssed_4294 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Ssed_0335 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Ssed_2833 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Ssed_1299 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Ssed_0795 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E Ssed_1131 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E Ssed_2617 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Ssed_3125 Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Ssed_3327 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Ssed_3146 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Ssed_0007 DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Ssed_1009 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E Ssed_3481 DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Ssed_2647 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Ssed_1752 exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Ssed_1993 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Ssed_2322 exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Ssed_2410 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Ssed_2852 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Ssed_1738 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Ssed_0467 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Ssed_4241 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Ssed_4025 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Ssed_4262 Site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Ssed_1936 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E Ssed_1937 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E Ssed_1935 Exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Ssed_1300 Calcium-transporting ATPase K03553 recA; recombination protein RecA E Ssed_2033 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Ssed_2034 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Ssed_2032 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Ssed_0534 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Ssed_0758 single-strand binding protein/primosomal replication protein N K02686 priB; primosomal replication protein N E Ssed_1564 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' E Ssed_2617 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Ssed_1589 exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E Ssed_1588 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Ssed_1300 Calcium-transporting ATPase K03553 recA; recombination protein RecA E Ssed_3370 Methylated-DNA--(protein)-cysteine S-methyltransferase K04485 radA; DNA repair protein RadA/Sms E Ssed_0008 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Ssed_0329 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Ssed_0895 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Ssed_1150 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Ssed_2850 recombination protein RecR K06187 recR; recombination protein RecR E Ssed_1281 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Ssed_3306 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC E Ssed_2033 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Ssed_2034 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Ssed_2032 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Ssed_1862 type III restriction enzyme, res subunit K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E Ssed_1589 exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E Ssed_1588 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Ssed_2303 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Ssed_0009 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Ssed_2841 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Ssed_0600 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Ssed_1544 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Ssed_0895 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Ssed_1150 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Ssed_2850 recombination protein RecR K06187 recR; recombination protein RecR F Ssed_1738 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Ssed_4119 transcriptional regulator, fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F Ssed_2596 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F Ssed_2297 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F Ssed_2617 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F Ssed_0391 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Ssed_2318 23S rRNA (Gm2251)-methyltransferase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Ssed_4027 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Ssed_2046 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F Ssed_1444 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Ssed_3422 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Ssed_2171 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Ssed_2172 SOS-response transcriptional repressor LexA -like protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D Ssed_1300 Calcium-transporting ATPase K03553 recA; recombination protein RecA D Ssed_0200 Repressor lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Ssed_1281 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Ssed_1567 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7] D Ssed_4025 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Ssed_3210 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Ssed_4147 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Ssed_2255 UvrD/REP helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D Ssed_1566 helicase C2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Ssed_2535 helicase C2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Ssed_0419 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Ssed_2716 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Ssed_0383 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Ssed_2306 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Ssed_2307 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 5, 2025