+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Sclerotinia sclerotiorum
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E SS1G_02201 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E SS1G_02296 cell division control protein 2 K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E SS1G_06051 serine/threonine-protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E SS1G_13698 hypothetical protein K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
D Cap binding complex
E SS1G_13629 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E SS1G_08946 conserved hypothetical protein K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E SS1G_08371 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E SS1G_01592 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E SS1G_12256 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E SS1G_11148 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SS1G_00452 conserved hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SS1G_05895 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E SS1G_14057 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E SS1G_05474 hypothetical protein K15541 MPE1; protein MPE1
E SS1G_13568 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E SS1G_11362 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SS1G_12553 serine/threonine protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SS1G_02547 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SS1G_06015 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E SS1G_09907 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E SS1G_11721 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E SS1G_01691 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E SS1G_12875 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E SS1G_09962 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E SS1G_12149 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E SS1G_11148 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SS1G_00452 conserved hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SS1G_09907 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E SS1G_01691 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E SS1G_00566 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E SS1G_04574 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E SS1G_06424 predicted protein K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E SS1G_03520 hypothetical protein K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
D Poly(A) addition factors
E SS1G_12538 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E SS1G_01333 hypothetical protein K13192 RBM26; RNA-binding protein 26
C Other processing factors
D SS1G_00565 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D SS1G_01819 hypothetical protein K27103 SRRT; serrate RNA effector molecule
D SS1G_10040 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E SS1G_12129 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E SS1G_01554 hypothetical protein K12877 MAGOH; protein mago nashi
E SS1G_13464 hypothetical protein K12881 THOC4; THO complex subunit 4
E SS1G_02874 hypothetical protein K12881 THOC4; THO complex subunit 4
E SS1G_05270 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E SS1G_06435 eukaryotic initiation factor 4A-12 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SS1G_14423 hypothetical protein K25178 CCDC174; coiled-coil domain-containing protein 174
E SS1G_07317 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E SS1G_11370 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E SS1G_04456 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E SS1G_00664 hypothetical protein K12878 THOC1; THO complex subunit 1
E SS1G_02723 hypothetical protein K12879 THOC2; THO complex subunit 2
E SS1G_06756 hypothetical protein K12880 THOC3; THO complex subunit 3
E SS1G_13464 hypothetical protein K12881 THOC4; THO complex subunit 4
E SS1G_02874 hypothetical protein K12881 THOC4; THO complex subunit 4
E SS1G_04682 hypothetical protein K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E SS1G_03048 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E SS1G_01104 predicted protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SS1G_00342 hypothetical protein K16466 CETN3; centrin-3
E SS1G_08824 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E SS1G_11653 hypothetical protein K09291 TPR; nucleoprotein TPR
E SS1G_10552 hypothetical protein K14298 RAE1; mRNA export factor
E SS1G_12747 hypothetical protein K14004 SEC13; protein transport protein SEC13
E SS1G_03474 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E SS1G_01637 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E SS1G_00341 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E SS1G_06851 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E SS1G_03817 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E SS1G_12348 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E SS1G_14013 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E SS1G_03225 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E SS1G_14058 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E SS1G_03976 hypothetical protein K14315 NDC1; nucleoporin NDC1
E SS1G_07729 hypothetical protein K14299 SEH1; nucleoporin SEH1
E SS1G_14256 hypothetical protein K18715 NUP159; nucleoporin NUP159
E SS1G_11024 hypothetical protein K18716 NUP42; nucleoporin NUP42
E SS1G_13630 hypothetical protein K18719 NUP82; nucleoporin NUP82
E SS1G_00342 hypothetical protein K16466 CETN3; centrin-3
E SS1G_09132 hypothetical protein K18723 GLE1; nucleoporin GLE1
E SS1G_14226 hypothetical protein K14284 NXF; nuclear RNA export factor
E SS1G_12186 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2
E SS1G_10967 hypothetical protein K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E SS1G_04524 GTP-binding nuclear protein GSP1/Ran K07936 RAN; GTP-binding nuclear protein Ran
E SS1G_14154 hypothetical protein K18726 FAF2; FAS-associated factor 2
E SS1G_03189 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E SS1G_10171 hypothetical protein K14290 XPO1; exportin-1
E SS1G_01719 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E SS1G_07827 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SS1G_04707 translation Initiation Factor Eif4e K03259 EIF4E; translation initiation factor 4E
E SS1G_04459 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E SS1G_00108 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SS1G_03124 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E SS1G_04322 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SS1G_05629 ATP-dependent RNA helicase DED1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SS1G_03690 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E SS1G_00363 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SS1G_11456 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SS1G_13071 hypothetical protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E SS1G_08075 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E SS1G_13289 hypothetical protein K14294 WIBG; partner of Y14 and mago
E SS1G_05220 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SS1G_02265 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E SS1G_09602 hypothetical protein K06965 PELO; protein pelota
E SS1G_03706 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E SS1G_10291 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E SS1G_08581 conserved hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E SS1G_07251 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E SS1G_01915 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E SS1G_08533 hypothetical protein K11493 RCC1; regulator of chromosome condensation
C Surveillance factors
D Surveillance complex
E SS1G_00613 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E SS1G_02272 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E SS1G_00971 hypothetical protein K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E SS1G_01887 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SS1G_13475 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E SS1G_08489 serine/threonine protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E SS1G_07119 protein phosphatase PP2A regulatory subunit A K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E SS1G_07871 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E SS1G_07868 conserved hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E SS1G_03690 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E SS1G_11611 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E SS1G_06776 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E SS1G_06958 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E SS1G_14233 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E SS1G_00204 hypothetical protein K10357 MYO5; myosin V
E SS1G_03891 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E SS1G_05361 hypothetical protein K13210 FUBP; far upstream element-binding protein
E SS1G_05520 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E SS1G_00220 elongation factor 1 gamma domain-containing protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E SS1G_09131 hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E SS1G_07676 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E SS1G_11723 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SS1G_00334 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SS1G_07827 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SS1G_04707 translation Initiation Factor Eif4e K03259 EIF4E; translation initiation factor 4E
E SS1G_00971 hypothetical protein K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E SS1G_04322 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SS1G_05629 ATP-dependent RNA helicase DED1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E SS1G_11309 conserved hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SS1G_02070 hypothetical protein K18749 LSM14; protein LSM14
E SS1G_07008 hypothetical protein K18752 TNPO1; transportin-1
E SS1G_13577 conserved hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E SS1G_03171 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E SS1G_14443 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E SS1G_03492 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SS1G_10500 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SS1G_01708 conserved hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SS1G_11612 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SS1G_13239 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SS1G_05691 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SS1G_12902 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SS1G_14124 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SS1G_06785 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E SS1G_00204 hypothetical protein K10357 MYO5; myosin V
E SS1G_01548 tubulin alpha chain K07374 TUBA; tubulin alpha
E SS1G_01818 tubulin alpha chain K07374 TUBA; tubulin alpha
E SS1G_06643 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SS1G_09748 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SS1G_04986 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E SS1G_02231 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E SS1G_12598 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SS1G_12459 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SS1G_02269 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E SS1G_14156 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E SS1G_03651 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E SS1G_03341 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E SS1G_01887 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SS1G_13475 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E SS1G_07770 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E SS1G_03339 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E SS1G_00363 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SS1G_07219 hypothetical protein K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E SS1G_11918 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E SS1G_04820 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E SS1G_04459 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E SS1G_06435 eukaryotic initiation factor 4A-12 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SS1G_03124 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E SS1G_00108 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SS1G_00900 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E SS1G_14226 hypothetical protein K14284 NXF; nuclear RNA export factor
E SS1G_07799 hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E SS1G_03492 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SS1G_11309 conserved hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SS1G_03341 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E SS1G_03651 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E SS1G_10500 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SS1G_01708 conserved hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SS1G_11612 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SS1G_13239 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SS1G_05691 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SS1G_12902 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SS1G_14124 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SS1G_06785 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E SS1G_07676 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E SS1G_13542 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E SS1G_03256 hypothetical protein K07573 CSL4; exosome complex component CSL4
E SS1G_10804 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SS1G_09279 hypothetical protein K03681 RRP40; exosome complex component RRP40
E SS1G_12042 hypothetical protein K11600 RRP41; exosome complex component RRP41
E SS1G_08471 hypothetical protein K12587 MTR3; exosome complex component MTR3
E SS1G_00987 hypothetical protein K12589 RRP42; exosome complex component RRP42
E SS1G_05411 hypothetical protein K12586 RRP43; exosome complex component RRP43
E SS1G_13558 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E SS1G_01560 hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E SS1G_11882 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E SS1G_13164 hypothetical protein K12592 C1D; exosome complex protein LRP1
E SS1G_10411 hypothetical protein K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E SS1G_04619 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E SS1G_10269 hypothetical protein K12597 AIR1_2; protein AIR1/2
E SS1G_03952 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E SS1G_11456 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SS1G_11868 hypothetical protein K12600 SKI3; superkiller protein 3
E SS1G_10828 hypothetical protein K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E SS1G_12598 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SS1G_06643 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SS1G_09748 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SS1G_04986 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E SS1G_02231 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E SS1G_12459 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SS1G_12740 conserved hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E SS1G_08753 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
E SS1G_12857 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E SS1G_02269 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E SS1G_14156 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E SS1G_13672 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E SS1G_05482 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E SS1G_12552 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E SS1G_07000 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E SS1G_06475 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E SS1G_04072 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SS1G_11603 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E SS1G_09744 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E SS1G_02087 heat shock protein 60, mitochondrial precursor K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E SS1G_10804 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SS1G_03256 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E SS1G_12042 hypothetical protein K11600 RRP41; exosome complex component RRP41
E SS1G_00987 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024