+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus suis SC070731 (serotype 2)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NJAUSS_0727 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E NJAUSS_0943 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NJAUSS_0985 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NJAUSS_0855 EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D NJAUSS_0463 MutT family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_0957 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1851 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1063 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1816 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1983 MutT/NudX family protein () K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1877 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NJAUSS_0727 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E NJAUSS_0943 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E NJAUSS_0985 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NJAUSS_0072 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E NJAUSS_1298 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NJAUSS_0855 EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NJAUSS_0730 Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E NJAUSS_1207 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NJAUSS_1094 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E NJAUSS_1282 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E NJAUSS_1684 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E NJAUSS_0961 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E NJAUSS_0800 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E NJAUSS_0782 superfamily I DNA/RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NJAUSS_1282 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E NJAUSS_1094 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NJAUSS_0140 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NJAUSS_0141 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NJAUSS_0105 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NJAUSS_0316 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F NJAUSS_0391 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NJAUSS_0008 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E NJAUSS_1950 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E NJAUSS_0234 mismatch repair ATPase K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E NJAUSS_0070 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E NJAUSS_1532 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E NJAUSS_1531 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E NJAUSS_0510 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NJAUSS_1799 DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E NJAUSS_0002 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NJAUSS_1424 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NJAUSS_0721 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NJAUSS_1505 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E NJAUSS_1094 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NJAUSS_0782 superfamily I DNA/RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NJAUSS_1688 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E NJAUSS_0161 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NJAUSS_0224 exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E NJAUSS_0074 recombinase A K03553 recA; recombination protein RecA E NJAUSS_0071 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E NJAUSS_0062 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NJAUSS_0392 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E NJAUSS_0074 recombinase A K03553 recA; recombination protein RecA E NJAUSS_1875 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E NJAUSS_1999 recombination protein F K03629 recF; DNA replication and repair protein RecF E NJAUSS_0327 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NJAUSS_1207 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NJAUSS_0041 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E NJAUSS_1247 recombination protein K06187 recR; recombination protein RecR E NJAUSS_1527 DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) E NJAUSS_0383 Holliday junction-specific endonuclease K03700 recU; recombination protein U E NJAUSS_0071 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E NJAUSS_0062 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E NJAUSS_0804 ATP-dependent exoDNAse beta subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E NJAUSS_0803 ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E NJAUSS_0261 Uncharacterized protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NJAUSS_1001 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NJAUSS_1397 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F NJAUSS_0928 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F NJAUSS_1523 nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NJAUSS_1207 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NJAUSS_0041 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F NJAUSS_1247 recombination protein K06187 recR; recombination protein RecR F NJAUSS_1094 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F NJAUSS_1684 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F NJAUSS_0961 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D NJAUSS_0207 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D NJAUSS_0622 Putative UV-damage repair protein uvrX K03502 umuC; DNA polymerase V C Other SOS response factors D NJAUSS_0074 recombinase A K03553 recA; recombination protein RecA D NJAUSS_1527 DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) D NJAUSS_1688 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NJAUSS_0161 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D NJAUSS_0421 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NJAUSS_0522 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D NJAUSS_0463 MutT family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_0957 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1851 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1063 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1816 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1983 MutT/NudX family protein () K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NJAUSS_1877 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D NJAUSS_1116 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D NJAUSS_1117 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D NJAUSS_1416 Bifunctional oligoribonuclease and PAP phosphatase nrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024