+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus suis GZ1 (serotype 2)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SSGZ1_0658 Methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SSGZ1_0887 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SSGZ1_0930 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SSGZ1_0796 Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SSGZ1_0439 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1007 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_0901 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1821 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1787 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1961 putative MutT/NudX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1847 DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SSGZ1_0658 Methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SSGZ1_0887 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SSGZ1_0930 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SSGZ1_0057 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SSGZ1_1239 Formamidopyrimidine-DNA glycolase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SSGZ1_0796 Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SSGZ1_0661 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SSGZ1_1160 RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SSGZ1_1039 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SSGZ1_1224 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SSGZ1_1645 Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E SSGZ1_0905 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E SSGZ1_0739 excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E SSGZ1_0721 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SSGZ1_1224 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SSGZ1_1039 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SSGZ1_0115 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SSGZ1_0116 DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SSGZ1_0093 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SSGZ1_0307 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F SSGZ1_0376 RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SSGZ1_0008 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SSGZ1_1929 MutS-1 protein K03555 mutS; DNA mismatch repair protein MutS E SSGZ1_0216 DNA structure-specific ATPase involved in suppression of recombination, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SSGZ1_0055 putative mismatch repair protein HexB K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SSGZ1_1487 Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SSGZ1_1486 Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SSGZ1_0533 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SSGZ1_1768 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SSGZ1_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SSGZ1_1374 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SSGZ1_0652 putative DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SSGZ1_1459 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SSGZ1_1039 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SSGZ1_0721 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SSGZ1_0137 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SSGZ1_1649 phage SMP K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SSGZ1_0205 Helicase RecD/TraA K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SSGZ1_0059 homologous recombination factor RecA K03553 recA; recombination protein RecA E SSGZ1_0056 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SSGZ1_0045 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SSGZ1_0377 Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SSGZ1_0059 homologous recombination factor RecA K03553 recA; recombination protein RecA E SSGZ1_1845 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SSGZ1_1977 RecF protein K03629 recF; DNA replication and repair protein RecF E SSGZ1_0311 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SSGZ1_1160 RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SSGZ1_0022 Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E SSGZ1_1201 RecR protein K06187 recR; recombination protein RecR E SSGZ1_1482 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SSGZ1_0367 Recombination protein U K03700 recU; recombination protein U E SSGZ1_0056 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SSGZ1_0045 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SSGZ1_0745 putative exonuclease RexA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SSGZ1_0744 putative exonuclease RexB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SSGZ1_0245 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SSGZ1_0947 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SSGZ1_1345 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SSGZ1_0872 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SSGZ1_1478 Histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SSGZ1_1160 RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SSGZ1_0022 Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F SSGZ1_1201 RecR protein K06187 recR; recombination protein RecR F SSGZ1_1039 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SSGZ1_1645 Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F SSGZ1_0905 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SSGZ1_0188 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SSGZ1_0472 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SSGZ1_0059 homologous recombination factor RecA K03553 recA; recombination protein RecA D SSGZ1_1482 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SSGZ1_0137 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SSGZ1_1649 phage SMP K03111 ssb; single-strand DNA-binding protein D SSGZ1_0394 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SSGZ1_0547 DnaQ exonuclease K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SSGZ1_0439 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1007 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_0901 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1821 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1787 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1961 putative MutT/NudX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SSGZ1_1847 DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SSGZ1_1062 ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SSGZ1_1064 ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SSGZ1_1367 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024