+E Transcription factors KO
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Transcription Factors - Sporolactobacillus terrae
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D C0679_01220 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D C0679_12980 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D C0679_01300 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
C LysR family
D C0679_05215 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D C0679_01610 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
C DeoR family
D C0679_07310 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D C0679_02205 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D C0679_11015 HTH domain-containing protein K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D C0679_09410 transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D C0679_03645 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C0679_10600 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C0679_04030 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D C0679_15220 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D C0679_04870 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D C0679_02845 UTRA domain-containing protein K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D C0679_07435 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D C0679_02700 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D C0679_01515 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C0679_03895 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D C0679_03920 GntR family transcriptional regulator K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D C0679_13095 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
C Lrp/AsnC family
D C0679_12895 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D C0679_02910 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D C0679_10255 transcriptional regulator CsgD K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D C0679_09100 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C0679_02860 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D C0679_07270 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D C0679_05875 MerR family DNA-binding transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
C Fur family
D C0679_08460 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D C0679_07565 ferric iron uptake transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D C0679_11735 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D C0679_13330 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D C0679_09730 HTH-type transcriptional regulator IscR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D C0679_01470 pyruvate dehydrogenase complex transcriptional repressor PdhR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C0679_01335 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D C0679_01760 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D C0679_06065 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C0679_06455 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C0679_01330 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C0679_03605 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C0679_08080 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D C0679_12955 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D C0679_08930 transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D C0679_07795 MurR/RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D C0679_12420 HTH-type transcriptional regulator MurR K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D C0679_05175 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D C0679_07910 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D C0679_05705 hypothetical protein K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D C0679_15115 GbsR/MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D C0679_00315 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D C0679_03505 AAA family ATPase K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D C0679_13570 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D C0679_06685 GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D C0679_11400 transcriptional regulator K07727 K07727; putative transcriptional regulator
D C0679_03855 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C0679_02090 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C0679_13800 transcriptional regulator K07729 K07729; putative transcriptional regulator
D C0679_14060 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D C0679_13720 antitoxin K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D C0679_03975 transcriptional regulator K03483 mtlR; mannitol operon transcriptional activator
D C0679_03095 hypothetical protein K03483 mtlR; mannitol operon transcriptional activator
C Others
D C0679_10795 transcriptional repressor RcnR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D C0679_07620 polyketide synthase regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D C0679_04190 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D C0679_03035 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D C0679_04705 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D C0679_00350 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D C0679_15620 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C0679_10815 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D C0679_09520 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D C0679_09145 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D C0679_00515 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D C0679_04720 PspC domain-containing protein K03973 pspC; phage shock protein C
D C0679_04800 hypothetical protein K05311 cggR; central glycolytic genes regulator
D C0679_08225 trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D C0679_06400 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D C0679_09740 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator
D C0679_06255 hypothetical protein K06314 rsfA; prespore-specific regulator
D C0679_03670 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D C0679_10365 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D C0679_04135 competence transcription factor (CTF) K02250 comK; competence protein ComK
D C0679_06260 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0