+E Transcription factors KO #

  Transcription Factors - Stenotrophomonas sp. KCTC 12332

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AXG53_15185 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AXG53_04745 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D AXG53_00355 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D AXG53_05510 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AXG53_13760 hypothetical protein K07506 K07506; AraC family transcriptional regulator D AXG53_11800 hypothetical protein K07506 K07506; AraC family transcriptional regulator D AXG53_03530 DNA methylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D AXG53_13855 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AXG53_11400 LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D AXG53_05035 CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D AXG53_04725 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D AXG53_10720 transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family D AXG53_11710 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor C LacI family D AXG53_07600 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AXG53_05980 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AXG53_17700 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AXG53_02020 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AXG53_00490 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AXG53_00535 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AXG53_11905 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D AXG53_08875 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AXG53_18715 hypothetical protein K03710 K03710; GntR family transcriptional regulator D AXG53_18745 hypothetical protein K03710 K03710; GntR family transcriptional regulator D AXG53_16765 transcriptional regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator C TetR/AcrR family D AXG53_06210 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D AXG53_06170 TetR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D AXG53_15520 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AXG53_05620 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D AXG53_01160 TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D AXG53_17595 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AXG53_07195 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D AXG53_01045 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D AXG53_17850 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D AXG53_00165 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D AXG53_08250 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D AXG53_19305 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D AXG53_00090 hypothetical protein K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D AXG53_12475 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D AXG53_16020 transcriptional regulator K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes C Fur family D AXG53_01565 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AXG53_03590 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D AXG53_15730 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AXG53_09535 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D AXG53_12820 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AXG53_08110 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AXG53_18455 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AXG53_08135 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AXG53_12885 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family D AXG53_03400 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D AXG53_05710 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AXG53_05130 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D AXG53_16550 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AXG53_15565 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D AXG53_08635 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D AXG53_17775 AAA family ATPase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AXG53_07135 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AXG53_18935 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D AXG53_16405 integrase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D AXG53_05815 regulator K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D AXG53_17625 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D AXG53_02025 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D AXG53_17185 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AXG53_10190 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor D AXG53_13860 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D AXG53_12740 hypothetical protein K07733 alpA; prophage regulatory protein D AXG53_19280 hypothetical protein K07733 alpA; prophage regulatory protein D AXG53_01275 hypothetical protein K07734 paiB; transcriptional regulator D AXG53_12440 hypothetical protein K07735 algH; putative transcriptional regulator D AXG53_02315 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D AXG53_14495 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D AXG53_14385 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0