+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptomyces sp. 769

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GZL_08384 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_02338 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_06567 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_01283 putative methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GZL_07562 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GZL_01702 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GZL_06720 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GZL_04230 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GZL_04371 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E GZL_04018 helicase domain protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GZL_04114 putative hydrolase mutT1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_03606 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_06016 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_02900 DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_p00137 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_p00138 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_08810 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_06015 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_07794 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_02419 NUDIX hydrolase C MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_04412 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_04413 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_02862 Deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GZL_08384 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_02338 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_06567 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_01283 putative methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GZL_08382 putative DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E GZL_07562 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GZL_01702 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GZL_01444 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E GZL_01184 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E GZL_02339 transcriptional regulator C AraC family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GZL_01284 transcriptional regulator C AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GZL_06720 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GZL_04230 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GZL_03565 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E GZL_03163 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GZL_02999 DNA-(apurinic or apyrimidinic site) lyase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E GZL_05782 DNA glycosylase/AP lyase C H2TH DNA-binding protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E GZL_04371 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GZL_05281 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GZL_02575 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GZL_06404 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E GZL_02033 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ D DNA ligase E GZL_03250 DNA ligase C NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E GZL_06535 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E GZL_06576 excinuclease ABC C A subunit K03701 uvrA; excinuclease ABC subunit A E GZL_01906 excinuclease ABC C A subunit K03701 uvrA; excinuclease ABC subunit A E GZL_06569 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E GZL_06585 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E GZL_03518 ATP-dependent DNA helicase UvrD or PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GZL_03523 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GZL_03913 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GZL_06535 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E GZL_03250 DNA ligase C NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GZL_05063 DNA-directed RNA polymerase C beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GZL_05064 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GZL_05099 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GZL_01872 DNA-directed RNA polymerase C alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GZL_07221 RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GZL_05341 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E GZL_03619 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GZL_03620 exonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GZL_00657 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GZL_06457 DNA polymerase III C alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GZL_04681 DNA polymerase III C beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GZL_05840 DNA polymerase III C delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GZL_04339 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GZL_02725 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GZL_06676 DNA polymerase III C epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GZL_07158 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GZL_p00160 exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GZL_04399 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E GZL_03250 DNA ligase C NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GZL_03518 ATP-dependent DNA helicase UvrD or PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GZL_03523 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GZL_03913 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GZL_04651 single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein E GZL_05733 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E GZL_07632 single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GZL_05686 RecD/TraA family helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GZL_02984 Protein recA K03553 recA; recombination protein RecA E GZL_07176 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GZL_07177 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GZL_07175 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E GZL_07224 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GZL_01454 exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E GZL_01455 exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GZL_02984 Protein recA K03553 recA; recombination protein RecA E GZL_04225 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E GZL_04683 recombination protein F K03629 recF; DNA replication and repair protein RecF E GZL_03170 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GZL_05887 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E GZL_04397 recombinant protein K06187 recR; recombination protein RecR E GZL_06738 putative recombination and DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E GZL_07176 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GZL_07177 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GZL_07175 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E GZL_01454 exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E GZL_01455 exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E GZL_07396 Ku70/Ku80 protein K10979 ku; DNA end-binding protein Ku E GZL_01529 Ku70/Ku80 protein K10979 ku; DNA end-binding protein Ku E GZL_02561 putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E GZL_01528 DNA polymerase LigD C polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GZL_04686 DNA gyrase C A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GZL_02889 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GZL_04685 DNA gyrase (subunit B) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GZL_02895 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GZL_04341 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F GZL_03183 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F GZL_05509 DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta F GZL_06043 putative DNA-binding protein Hu K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GZL_05887 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F GZL_04397 recombinant protein K06187 recR; recombination protein RecR F GZL_03250 DNA ligase C NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F GZL_05206 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GZL_02940 ATP-dependent DNA helicase C RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GZL_06576 excinuclease ABC C A subunit K03701 uvrA; excinuclease ABC subunit A F GZL_01906 excinuclease ABC C A subunit K03701 uvrA; excinuclease ABC subunit A F GZL_06569 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GZL_07482 DNA polymerase IV (Pol IV) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D GZL_02984 Protein recA K03553 recA; recombination protein RecA D GZL_02955 transcriptional repressor C LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D GZL_06738 putative recombination and DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D GZL_06794 DNA polymerase III C alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D GZL_04651 single-stranded DNA-binding protein 1 K03111 ssb; single-strand DNA-binding protein D GZL_05733 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D GZL_07632 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D GZL_02983 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D GZL_01592 PHP domain-containing protein K02347 polX; DNA polymerase (family X) C DNA helicases D GZL_02956 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D GZL_02998 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D GZL_04114 putative hydrolase mutT1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_03606 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_06016 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_02900 DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_p00137 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_p00138 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_08810 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_06015 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_07794 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_02419 NUDIX hydrolase C MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_04412 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_04413 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GZL_06746 ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D GZL_02862 Deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D GZL_01367 ribonucleoside-diphosphate reductase C adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GZL_02953 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GZL_03480 ribonucleoside-diphosphate reductase C alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GZL_03481 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024