+D Transcription factors KO #

  Transcription Factors - Salmonella enterica subsp. enterica serovar Typhi Ty2

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D t0886 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D t0108 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D t1811 hpaA; 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D t3570 rhaR; L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D t3571 rhaS; L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D t1194 celD; putative cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D t4202 adiY; putative AraC family regulatory protein K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D t0404 yfeG; ethanolamine operon transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D t4171 soxS; regulatory protein SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D t1440 marA; multiple antibiotic resistance protein MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D t4625 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D t2287 ramA; transcriptional activator RamA K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D t2299 ykgD; hypothetical araC-family transcriptional regulator K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon D t4204 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D t1159 putative transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT D t0838 pocR; pdu/cob regulatory protein PocR K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator D t3096 possible AraC-family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D t0599 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D t2890 gcvA; regulatory protein of glycine cleavage pathway K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D t3390 ilvY; LysR-family regulatory protein for ilvC expression K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D t3333 metR; trans-activator of metE and metH K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D t0042 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D t3500 oxyR; hydrogen peroxide-inducible regulon activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D t2982 iciA; chromosome intitiation inhibitor K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D t0119 leuO; probable activator protein in leuABCD operon K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D t3165 tdcA; TDC operon transcriptional activator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D t2346 hypothetical lysR-family transcriptional regulator K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D t1626 cysB; cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D t3717 dsdC; D-serine deaminase activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D t2183 lysR-family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC D t1581 putative transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D t4561 probable transcriptional activator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D t3282 probable LysR-family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D t3449 possible LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D t2032 deoR; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D t3724 putative DeoR-family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D t3990 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D t3182 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D t2887 fucR; l-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D t2739 srlR; glucitol operon repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D t4432 yjfQ; probable transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D t3596 yihW; putative DeoR-family transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D t0664 galS; mgl repressor and galactose ultrainduction factor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D t2921 galR; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D t3633 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D t3857 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D t3524 cytR; transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D t0122 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D t4490 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D t1298 purR; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D t3823 putative lacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D t3978 gntR; gluconate utilization operon repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D t4515 regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D t2098 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D t3915 gntR family regulatory protein K03710 K03710; GntR family transcriptional regulator D t1072 fadR; fatty acid-fatty acyl responsive DNA-binding protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D t0157 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D t4556 uxuR; uxu operon transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D t3826 lctR; putative L-lactate dehydrogenase operon regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D t3257 putative GntR-family transcriptional regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D t3512 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D t1498 putative regulatory protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D t2689 ygaE; putative transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D t1431 putative regulatory protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor C TetR/AcrR family D t2383 acrR; potential acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D t3786 ttk; putative TetR-family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D t1799 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D t1305 putative TetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D t1578 putative transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D t1707 putative TetR-family regulatory protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D t3498 yijC; possible TetR-family trancriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D t2069 ybiH; hypothetical tetR-family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D t2027 putative TetR-family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D t3643 asnC; regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D t1933 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D t1975 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D t2400 ybaO; hypothetical transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D t0926 sdiA; cell-division regulatory protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D t0895 rcsA; colanic acid capsullar biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D t1778 csgD; putative regulatory protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D t4591 conserved hypothetical regulatory protein K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D t3991 malT; MalT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D t1441 marR; multiple antibiotic resistance protein MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D t1312 slyA; transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D t2710 emrR; putative transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D t2821 slyA; putative regulatory protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D t2361 cueR; copper efflux regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D t4093 zntR; putative Zn(II)-responsive regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D t4172 soxR; SoxR protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D t0695 yehV; putative transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes C Fur family D t2182 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D t4147 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D t4114 iclR; acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D t2344 allR; negative regulator of allantoin and glyoxylate utilization operons K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D t1036 kdgR; transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D t3852 yiaJ; putative transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D t4039 crp; cyclic AMP receptor protein,catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D t1564 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D t3387 hypothetical protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D t0312 yfhP; conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D t4418 yjeB; conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family D t1514 putative DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D t2052 transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D t0990 hexR; putative hex-regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D t3488 birA; biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D t3300 fis; Fis DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D t4622 trpR; probable trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D t2497 prpR; propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D t3223 nlp; Ner-like regulatory protein K07724 ner; Ner family transcriptional regulator D t4364 cII; transcriptional regulatory protein K07724 ner; Ner family transcriptional regulator D t0113 yabN; putative ABC transporter periplasmic solute binding protein K11925 sgrR; SgrR family transcriptional regulator D t3663 conserved hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D t4619 nadR; conserved hypothetical transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D t3591 ygjM; conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D t2741 ygaA; putative sigma-54-dependent transriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D t2761 fhlA; transcriptional activator of the formate hydrogenlyase system K15836 fhlA; formate hydrogenlyase transcriptional activator D t0211 yaeG; conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator D t0503 putative transcriptional regulator K06714 rocR; arginine utilization regulatory protein D t2108 modE; putative molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D t3740 putative DNA-binding protein K07726 K07726; putative transcriptional regulator D t3871 putative DNA-binding protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family D t3938 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D t3519 metJ; repressor of the methionine regulon K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D t1797 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D t4483 relB; RelB protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D t2933 conserved hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D t2414 bolA; BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D t3320 rfaH; transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH D t3275 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D t2193 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D t1409 putative regulatory protein K15545 mlc; transcriptional regulator of PTS gene D t3832 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor D t1588 tyrR; transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D t0299 cadC; transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon D t2778 iagA; invasion protein regulator K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D t0369 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D t1596 pspF; psp operon transcriptional activator PspF K03974 pspF; psp operon transcriptional activator D t1593 pspC; phage shock protein C K03973 pspC; phage shock protein C D t3545 ydeW; putative regulatory protein K11531 lsrR; lsr operon transcriptional repressor D t2251 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D t2651 hypothetical protein K07733 alpA; prophage regulatory protein D t4525 phage DNA binding protein K07733 alpA; prophage regulatory protein D t3008 conserved hypothetical protein K07735 algH; putative transcriptional regulator D t0069 caiF; transcriptional activator CaiF K08277 caiF; transcriptional activator CaiF D t0194 dksA; dosage-dependent dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D t2448 ybaD; hypothetical protein K07738 nrdR; transcriptional repressor NrdR D t2531 crl; curlin genes transcriptional activator K11926 crl; sigma factor-binding protein Crl D t0123 yabB; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ D t2313 fimY; fimbriae Y protein K08088 fimY; fimbrial regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0