+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus thermophilus JIM 8232

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D STH8232_1747 ogt; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E STH8232_1246 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E STH8232_2022 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E STH8232_1428 nth; endonuclease III, DNA repair K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D STH8232_1719 putative A3CMM1 UDP-glucose 4-epimerase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0790 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0226 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0876 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_1326 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0530 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_1542 putative mutT/NudX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_2104 dut; deoxyuridine 5-triphosphate nucleotidohydrolase (DUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D STH8232_1747 ogt; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E STH8232_1246 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E STH8232_2022 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E STH8232_0075 3-methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E STH8232_0812 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E STH8232_1428 nth; endonuclease III, DNA repair K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E STH8232_1777 exoA; 3-exo-deoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E STH8232_1432 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E STH8232_1782 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E STH8232_2030 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E STH8232_2013 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E STH8232_1720 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E STH8232_1528 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E STH8232_1187 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E STH8232_0688 uvrD, superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E STH8232_2030 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E STH8232_1782 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F STH8232_2151 rpoB; DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F STH8232_2150 rpoC; DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F STH8232_2208 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F STH8232_0223 rpoE; DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F STH8232_1656 DNA-directed RNA polymerase omega chain(RNAP omega;subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F STH8232_0006 transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E STH8232_0068 mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS E STH8232_2031 mutS2; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E STH8232_0072 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E STH8232_1423 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E STH8232_1422 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E STH8232_1403 dnaE; DNA polymeraDNA polymerase III alphase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E STH8232_0104 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E STH8232_0002 dnaN; beta subunit of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E STH8232_0912 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E STH8232_0602 dnaH; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E STH8232_1844 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E STH8232_1372 folC2; folylpolyglutamate synthase / dihydrofolate synthase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E STH8232_1782 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E STH8232_1187 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E STH8232_0688 uvrD, superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E STH8232_2127 ssbA; single strand binding protein K03111 ssb; single-strand DNA-binding protein E STH8232_2018 ssbB; single strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E STH8232_2036 recD; exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E STH8232_0077 recA; protein RecA K03553 recA; recombination protein RecA E STH8232_0074 ruvA; holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E STH8232_2236 ruvB; holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E STH8232_1655 priA; primosomal replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E STH8232_1618 sbcC; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E STH8232_1619 sbcD; ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E STH8232_0077 recA; protein RecA K03553 recA; recombination protein RecA E STH8232_2102 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E STH8232_2325 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E STH8232_1990 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E STH8232_1432 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E STH8232_0045 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E STH8232_0805 recR; recombination protein recR K06187 recR; recombination protein RecR E STH8232_1418 recN; DNA repair and genetic recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) E STH8232_0325 recU; recombination protein U K03700 recU; recombination protein U E STH8232_0074 ruvA; holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E STH8232_2236 ruvB; holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E STH8232_1976 rexA; ATP-dependent exonuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E STH8232_1977 rexB; ATP-dependent exonuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E STH8232_1159 cas1-2; CRISPR-associated protein cas1 K15342 cas1; CRISP-associated protein Cas1 E STH8232_0854 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E STH8232_1618 sbcC; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E STH8232_1619 sbcD; ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F STH8232_1503 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F STH8232_1741 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F STH8232_1100 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F STH8232_1414 hstH; histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F STH8232_1432 recJ; single strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F STH8232_0045 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F STH8232_0805 recR; recombination protein recR K06187 recR; recombination protein RecR F STH8232_1782 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F STH8232_2013 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F STH8232_1720 hypothetical protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D STH8232_1907 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D STH8232_1585 umuC1; soS responce UmuC protein K03502 umuC; DNA polymerase V D STH8232_1066 umuC-MucB-like protein K03502 umuC; DNA polymerase V C Other SOS response factors D STH8232_0077 recA; protein RecA K03553 recA; recombination protein RecA D STH8232_1095 umuD; UV resistance protein UmuD K01356 lexA; repressor LexA [EC:3.4.21.88] D STH8232_1418 recN; DNA repair and genetic recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) D STH8232_2127 ssbA; single strand binding protein K03111 ssb; single-strand DNA-binding protein D STH8232_2018 ssbB; single strand binding protein K03111 ssb; single-strand DNA-binding protein D STH8232_0484 recX; regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D STH8232_1009 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D STH8232_1719 putative A3CMM1 UDP-glucose 4-epimerase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0790 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0226 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0876 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_1326 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_0530 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_1542 putative mutT/NudX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D STH8232_2104 dut; deoxyuridine 5-triphosphate nucleotidohydrolase (DUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D STH8232_1495 nrdE; ribonucleotide reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D STH8232_1496 nrdF; ribonucleotide diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D STH8232_0940 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024