+D Transcription factors KO #

  Transcription Factors - Salmonella enterica subsp. enterica serovar Typhi CT18

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D HCM1.187c putative DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D STY2200 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D STY0121 arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D STY1142 hpaA; 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D STY3824 L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D STY3825 L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D STY1798 putative cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D STY4494 putative AraC family regulatory protein K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D STY2691 ethanolamine operon transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D STY4463 soxS; regulatory protein SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D STY1541 multiple antibiotic resistance protein MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D STY4933 right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D STY0624 ramA; transcriptional activator RamA K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D STY0611 hypothetical araC-family transcriptional regulator K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon D STY4496 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D STY1839 putative transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT D STY2241 pocR; pdu/cob regulatory protein PocR K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator D STY3352 possible AraC-family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D STY2491 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D STY3122 regulatory protein for glycine cleavage pathway K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D STY3649 LysR-family regulatory protein for ilvC expression K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D STY3595 trans-activator of metE and metH K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D STY0048 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D STY3749 hydrogen peroxide-inducible regulon activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D STY3220 chromosome intitiation inhibitor K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D STY0134 probable activator protein in leuABCD operon K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D STY3428 TDC operon transcriptional activator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D STY0562 hypothetical lysR-family transcriptional regulator K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D STY1337 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D STY3979 D-serine deaminase activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D STY0730 lysR-family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC D STY1386 putative transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D STY4867 probable transcriptional activator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D STY3547 probable LysR-family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D STY3708 possible LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D STY0897 deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D STY3988 putative DeoR-family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D STY4280 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D STY3445 galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D STY3119 l-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D STY2959 glucitol operon repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D STY4737 yjfQ; probable transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D STY3853 putative DeoR-family transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D STY2425 mgl repressor and galactose ultrainduction factor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D STY3155 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D STY3891 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D STY4136 xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D STY3776 transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D STY0138 fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D STY4795 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D STY1692 purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D STY4100 putative lacI family transcriptional regulator regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D STY4268 gluconate utilization operon repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D STY4819 regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D STY0822 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D STY4201 gntR family regulatory protein K03710 K03710; GntR family transcriptional regulator D STY1934 fatty acid-fatty acyl responsive DNA-binding protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D STY0174 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D STY4862 uxuR; uxu operon transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D STY4103 putative L-lactate dehydrogenase operon regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D STY3521 putative GntR-family transcriptional regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D STY3762 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D STY1477 putative regulatory protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D STY2914 putative transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D STY1551 putative regulatory protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor C TetR/AcrR family D HCM1.243 tetR; tetracycline repressor protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D STY0521 potential acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D STY4062 putative TetR-family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D STY1157 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D STY1685 putative TetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D STY1390 putative transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D STY1253 putative TetR-family regulatory protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D STY3747 possible TetR-family trancriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D STY0854 hypothetical tetR-family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D STY0902 putative tetR-family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D STY3902 regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D STY0957 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D STY1005 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D STY0502 ybaO; hypothetical transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D STY2158 cell-division regulatory protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D STY2190 colanic acid capsullar biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D STY1179 putative regulatory protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D STY4901 conserved hypothetical regulatory protein K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D STY4281 MalT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D STY1540 multiple antibiotic resistance protein MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D STY1678 slyA; transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D STY2939 putative transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D STY3045 putative regulatory protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D HCM1.151c merR; putative mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D HCM1.235 merR; putative mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D HCM1.159 merD; putative mercuric resistance operon coregulator K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D HCM1.230c merD; putative mercuric resistance operon coregulator K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D STY0545 cueR; copper efflux regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D STY4386 zntR; putative Zn(II)-responsive regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D STY4464 soxR; SoxR protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D STY2390 putative transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes C Fur family D STY0731 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D STY4437 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D STY4404 acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D STY0564 allR; negative regulator of allantoin and glyoxylate utilization operons K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D STY1972 kdgR; transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D STY4131 putative transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D STY4331 crp; cyclic AMP receptor protein,catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D STY1404 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D STY2790 conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D STY4724 yjeB; conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family D STY1459 putative DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D STY0876 transcriptional regulator (iron dependant repressor family) K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D STY2095 putative hex-regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D STY3741 bifunctional protein: biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D STY3565 Fis DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D STY4930 trpR; probable trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D STY0399 prpR; propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D STY3485 Ner-like regulatory protein K07724 ner; Ner family transcriptional regulator D STY4673 cII; transcriptional regulatory protein K07724 ner; Ner family transcriptional regulator D STY0127 putative ABC transporter periplasmic solute binding protein K11925 sgrR; SgrR family transcriptional regulator D STY3923 conserved hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D STY4927 nadR; conserved hypothetical transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D STY3848 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D STY2961 putative sigma-54-dependent transriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D STY2981 transcriptional activator of the formate hydrogenlyase system K15836 fhlA; formate hydrogenlyase transcriptional activator D STY0232 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator D STY2591 putative transcriptional regulator K06714 rocR; arginine utilization regulatory protein D STY0812 putative molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D STY4005 putative DNA-binding protein K07726 K07726; putative transcriptional regulator D STY4154 putative DNA-binding protein K07726 K07726; putative transcriptional regulator D STY2065 putative cro repressor K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D STY4227 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D STY3770 repressor of the methionine regulon K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D STY1159 proline dehydrogenase (proline oxidase) K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D STY4788 relB; RelB protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D STY3168 conserved hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D STY0488 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D HCM1.87 putative plasmid partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D STY3582 transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH D STY3540 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D STY0720 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D STY1576 putative regulatory protein K15545 mlc; transcriptional regulator of PTS gene D STY4109 mannitol operon repressor (mannitol repressor protein) K02562 mtlR; mannitol operon repressor D STY1378 transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D STY2804 transcriptional activator cadC K03765 cadC; transcriptional activator of cad operon D STY2999 iagA; invasion protein regulator K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D STY2728 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D STY1370 psp operon transcriptional activator PspF K03974 pspF; psp operon transcriptional activator D STY1373 phage shock protein C K03973 pspC; phage shock protein C D STY3797 putative regulatory protein K11531 lsrR; lsr operon transcriptional repressor D STY0664 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D STY4828 phage DNA binding protein K07733 alpA; prophage regulatory protein D STY3249 conserved hypothetical protein K07735 algH; putative transcriptional regulator D STY0078 transcriptional activator CaiF K08277 caiF; transcriptional activator CaiF D STY0211 dosage-dependent dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D STY0364 curlin genes transcriptional activator K11926 crl; sigma factor-binding protein Crl D STY0139 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ D STY0598 fimY; fimbriae Y protein K08088 fimY; fimbrial regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 3, 2025 #
Classification taken and modified from TRANSFAC 7.0