+F Repair protein KO #

  DNA Repair and Recombination Proteins - Staphylococcus aureus subsp. aureus 71193 (MSSA)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ST398NM01_2597 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ST398NM01_0769 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ST398NM01_0655 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ST398NM01_2396 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ST398NM01_1961 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ST398NM01_1452 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ST398NM01_1841 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ST398NM01_2935 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ST398NM01_2597 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ST398NM01_0769 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ST398NM01_0655 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ST398NM01_2396 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ST398NM01_1961 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ST398NM01_1719 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E ST398NM01_1743 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E ST398NM01_1452 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ST398NM01_1622 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E ST398NM01_1699 RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ST398NM01_1998 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ST398NM01_1744 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ST398NM01_0835 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ST398NM01_0834 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E ST398NM01_1142 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ST398NM01_1999 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ST398NM01_1744 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E ST398NM01_1998 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ST398NM01_0617 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ST398NM01_0618 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ST398NM01_2277 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ST398NM01_2170 DNA-directed RNA polymerase delta chain K03048 rpoE; DNA-directed RNA polymerase subunit delta F ST398NM01_1208 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ST398NM01_0569 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ST398NM01_1298 MutS K03555 mutS; DNA mismatch repair protein MutS E ST398NM01_1140 MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E ST398NM01_1299 MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ST398NM01_1589 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ST398NM01_1588 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ST398NM01_1756 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ST398NM01_1266 DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E ST398NM01_0002 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ST398NM01_1652 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ST398NM01_0550 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ST398NM01_1987 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ST398NM01_0544 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ST398NM01_1998 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ST398NM01_1999 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ST398NM01_2942 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E ST398NM01_0446 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E ST398NM01_2139 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ST398NM01_1683 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ST398NM01_1287 Reca K03553 recA; recombination protein RecA E ST398NM01_1705 RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ST398NM01_1704 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ST398NM01_1210 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ST398NM01_1348 SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E ST398NM01_1347 SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ST398NM01_1287 Reca K03553 recA; recombination protein RecA E ST398NM01_0601 RadA K04485 radA; DNA repair protein RadA/Sms E ST398NM01_0004 RecF K03629 recF; DNA replication and repair protein RecF E ST398NM01_1226 RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ST398NM01_1699 RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ST398NM01_1631 RecO K03584 recO; DNA repair protein RecO (recombination protein O) E ST398NM01_0546 RecR K06187 recR; recombination protein RecR E ST398NM01_1585 RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E ST398NM01_1449 RecU K03700 recU; recombination protein U E ST398NM01_1705 RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ST398NM01_1704 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E ST398NM01_0950 ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E ST398NM01_0949 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E ST398NM01_1348 SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E ST398NM01_1347 SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ST398NM01_0006 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ST398NM01_0005 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ST398NM01_1252 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ST398NM01_1471 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ST398NM01_2944 Rect K07455 recT; recombination protein RecT F ST398NM01_1699 RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ST398NM01_1631 RecO K03584 recO; DNA repair protein RecO (recombination protein O) F ST398NM01_0546 RecR K06187 recR; recombination protein RecR F ST398NM01_1998 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F ST398NM01_0798 RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ST398NM01_1481 RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ST398NM01_0835 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ST398NM01_0834 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ST398NM01_1988 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D ST398NM01_1365 hypothetical protein K03502 umuC; DNA polymerase V C Other SOS response factors D ST398NM01_1287 Reca K03553 recA; recombination protein RecA D ST398NM01_1341 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D ST398NM01_1585 RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D ST398NM01_2942 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D ST398NM01_0446 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D ST398NM01_2139 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D ST398NM01_1966 RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D ST398NM01_1139 DNA Polymerase X family K02347 polX; DNA polymerase (family X) C DNA helicases D ST398NM01_1455 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D ST398NM01_1841 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ST398NM01_2935 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ST398NM01_0808 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ST398NM01_0809 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D ST398NM01_1757 Phosphoesterase, DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024