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Transcription Machinery - Sceloporus undulatus (fence lizard)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 121933599 POLR2A; DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E 121921671 POLR2B; DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 121914268 POLR2C; DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 121917132 POLR2J; DNA-directed RNA polymerase II subunit RPB11-a isoform X1 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 121927324 POLR2D; DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 121915963 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 121916313 POLR2I; DNA-directed RNA polymerase II subunit RPB9 isoform X1 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E 121916705 POLR2E; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 121930320 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 121926503 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 121930027 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 121934267 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E 121930152 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E 121927017 GTF2A1; transcription initiation factor IIA subunit 1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 121935685 GTF2A2; transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 121929681 GTF2B; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 121929368 TBPL1; TATA box-binding protein-like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121919685 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121936577 TBPL2; TATA box-binding protein-like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121936179 TAF1; transcription initiation factor TFIID subunit 1 isoform X1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 121927830 transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 121931268 TAF3; transcription initiation factor TFIID subunit 3 isoform X1 K14650 TAF3; transcription initiation factor TFIID subunit 3
E 121917411 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4B-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 121917449 transcription initiation factor TFIID subunit 4B-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 121929508 TAF4; transcription initiation factor TFIID subunit 4 isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 121919475 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L K03130 TAF5; transcription initiation factor TFIID subunit 5
E 121925047 TAF5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 121932918 TAF6; transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 121915966 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L K03131 TAF6; transcription initiation factor TFIID subunit 6
E 121936311 TAF7L; transcription initiation factor TFIID subunit 7-like isoform X1 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 121928715 TAF8; transcription initiation factor TFIID subunit 8 isoform X1 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 121933536 transcription initiation factor TFIID subunit 9-like K14535 TAF9; transcription initiation factor TFIID subunit 9
E 121926897 TAF10; transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 121927885 TAF11; transcription initiation factor TFIID subunit 11 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 121915248 TAF12; transcription initiation factor TFIID subunit 12 isoform X1 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 121925039 TAF13; transcription initiation factor TFIID subunit 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 121916884 TAF15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D TFIIE
E 121921369 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 121921390 GTF2E2; transcription initiation factor IIE subunit beta K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E 121924339 GTF2F1; general transcription factor IIF subunit 1 K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E 121925799 GTF2F2; general transcription factor IIF subunit 2 isoform X1 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 121924886 GTF2H1; general transcription factor IIH subunit 1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 121923534 GTF2H2; general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 121916531 GTF2H3; general transcription factor IIH subunit 3 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 121921605 GTF2H4; general transcription factor IIH subunit 4 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 121914555 ERCC3; general transcription and DNA repair factor IIH helicase subunit XPB K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 121916112 ERCC2; general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 121935716 GTF2H5; general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 121921692 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 121919169 MNAT1; CDK-activating kinase assembly factor MAT1 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 121922250 CCNH; cyclin-H isoform X1 K06634 CCNH; cyclin H
C Mediator complex
D Head
E 121919436 MED6; mediator of RNA polymerase II transcription subunit 6 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 121928397 MED8; mediator of RNA polymerase II transcription subunit 8 K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E 121926213 MED17; mediator of RNA polymerase II transcription subunit 17 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 121916081 MED18; mediator of RNA polymerase II transcription subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 121928526 MED19; mediator of RNA polymerase II transcription subunit 19 K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E 121929672 MED20; mediator of RNA polymerase II transcription subunit 20 isoform X1 K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 121937206 MED22; mediator of RNA polymerase II transcription subunit 22 isoform X1 K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 121931960 MED28; mediator of RNA polymerase II transcription subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 121915876 MED29; mediator of RNA polymerase II transcription subunit 29 K15142 MED29; mediator of RNA polymerase II transcription subunit 29
E 121929616 MED30; mediator of RNA polymerase II transcription subunit 30 K15143 MED30; mediator of RNA polymerase II transcription subunit 30
D Middle
E 121934161 MED1; mediator of RNA polymerase II transcription subunit 1 isoform X1 K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 121932673 MED4; mediator of RNA polymerase II transcription subunit 4 K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E 121924445 MED7; mediator of RNA polymerase II transcription subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 121914966 MED9; mediator of RNA polymerase II transcription subunit 9 K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 121930017 MED10; mediator of RNA polymerase II transcription subunit 10 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 121932306 MED21; mediator of RNA polymerase II transcription subunit 21 K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 121916902 MED31; mediator of RNA polymerase II transcription subunit 31 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 121925213 MED14; LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E 121936574 mediator of RNA polymerase II transcription subunit 15-like K15157 MED15; mediator of RNA polymerase II transcription subunit 15
E 121916668 MED16; mediator of RNA polymerase II transcription subunit 16 K15159 MED16; mediator of RNA polymerase II transcription subunit 16
D CDK-module
E 121919789 CDK19; cyclin-dependent kinase 19 isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 121926070 CDK8; cyclin-dependent kinase 8 isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 121916307 CCNC; cyclin-C isoform X1 K15161 CCNC; cyclin-C
E 121925971 MED12L; mediator of RNA polymerase II transcription subunit 12-like protein K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 121936729 MED12; mediator of RNA polymerase II transcription subunit 12 isoform X1 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 121916495 MED13L; mediator of RNA polymerase II transcription subunit 13-like isoform X1 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
E 121917140 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13-like K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 121920186 MED23; mediator of RNA polymerase II transcription subunit 23 isoform X1 K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 121935221 MED24; mediator of RNA polymerase II transcription subunit 24 isoform X1 K15167 MED24; mediator of RNA polymerase II transcription subunit 24
E 121934231 MED25; mediator of RNA polymerase II transcription subunit 25 isoform X1 K15168 MED25; mediator of RNA polymerase II transcription subunit 25
E 121936609 MED27; mediator of RNA polymerase II transcription subunit 27 isoform X1 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E 121934285 KAT2B; histone acetyltransferase KAT2B isoform X1 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 121935011 KAT2A; LOW QUALITY PROTEIN: histone acetyltransferase KAT2A K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 121914234 transformation/transcription domain-associated protein isoform X1 K08874 TRRAP; transformation/transcription domain-associated protein
E 121935459 SUPT3H; transcription initiation protein SPT3 homolog isoform X1 K11313 SUPT3H; transcription initiation protein SPT3
E 121916852 TADA2A; transcriptional adapter 2-alpha isoform X1 K11314 TADA2A; transcriptional adapter 2-alpha
E 121928527 TADA2B; transcriptional adapter 2-beta K15127 TADA2B; transcriptional adapter 2-beta
E 121921213 TADA3; transcriptional adapter 3 K11315 TADA3; transcriptional adapter 3
E 121930062 TADA1; transcriptional adapter 1 K11317 TADA1; transcriptional adapter 1
E 121927830 transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 121917411 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4B-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 121917449 transcription initiation factor TFIID subunit 4B-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 121929508 TAF4; transcription initiation factor TFIID subunit 4 isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 121919475 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L K03130 TAF5; transcription initiation factor TFIID subunit 5
E 121925047 TAF5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 121932918 TAF6; transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 121915966 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L K03131 TAF6; transcription initiation factor TFIID subunit 6
E 121936311 TAF7L; transcription initiation factor TFIID subunit 7-like isoform X1 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 121933536 transcription initiation factor TFIID subunit 9-like K14535 TAF9; transcription initiation factor TFIID subunit 9
E 121926897 TAF10; transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 121915248 TAF12; transcription initiation factor TFIID subunit 12 isoform X1 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 121933096 ATXN7L3; ataxin-7-like protein 3 isoform X1 K11363 SGF11; SAGA-associated factor 11
E 121935183 SGF29; SAGA-associated factor 29 isoform X1 K11364 SGF29; SAGA-associated factor 29
E 121924923 SUPT7L; STAGA complex 65 subunit gamma K11316 SUPT7L; STAGA complex 65 subunit gamma
E 121928275 ATXN7L2; ataxin-7-like protein 2 isoform X1 K11318 ATXN7; ataxin-7
E 121924409 ATXN7; ataxin-7 isoform X1 K11318 ATXN7; ataxin-7
E 121930564 ATXN7L1; ataxin-7-like protein 1 isoform X1 K11318 ATXN7; ataxin-7
E 121922256 CHD1; LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 121929927 ENY2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 121914221 USP22; ubiquitin carboxyl-terminal hydrolase 22 isoform X1 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 121937552 SF3B3; splicing factor 3B subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 121920658 SMARCA4; transcription activator BRG1 isoform X1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 121920755 SMARCA2; probable global transcription activator SNF2L2 isoform X1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 121932997 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 121934353 SMARCC1; SWI/SNF complex subunit SMARCC1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 121921655 SMARCC2; SWI/SNF complex subunit SMARCC2 isoform X1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 121933062 SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 121933085 SMARCD3; LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 121923124 SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 121933561 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E 121937536 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 121933087 actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1
E 121934890 actin, clone 302-like K05692 ACTB_G1; actin beta/gamma 1
E 121935651 actin, cytoplasmic type 5-like K05692 ACTB_G1; actin beta/gamma 1
E 121935652 actin, clone 302-like K05692 ACTB_G1; actin beta/gamma 1
E 121921336 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 121925319 ACTL6A; actin-like protein 6A K11340 ACTL6A; actin-like protein 6A
E 121935374 actin-like protein 6B isoform X1 K11652 ACTL6B; actin-like protein 6B
E 121919044 ARID1B; AT-rich interactive domain-containing protein 1B isoform X1 K11653 ARID1; AT-rich interactive domain-containing protein 1
E 121915257 ARID1A; AT-rich interactive domain-containing protein 1A isoform X1 K11653 ARID1; AT-rich interactive domain-containing protein 1
E 121931005 ARID2; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 2 K11765 ARID2; AT-rich interactive domain-containing protein 2
E 121923283 PBRM1; protein polybromo-1 isoform X1 K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E 121932997 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 121922350 SUB1; activated RNA polymerase II transcriptional coactivator p15 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 121925709 CCAR1; cell division cycle and apoptosis regulator protein 1 isoform X1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
E 121923853 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1 isoform X1 K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1
C Other transcription-related factors
D Transcription elongation factors
E 121928865 TCEA2; transcription elongation factor A protein 2 isoform X1 K03145 TFIIS; transcription elongation factor S-II
E 121929431 TCEA1; transcription elongation factor A protein 1 isoform X1 K03145 TFIIS; transcription elongation factor S-II
E 121915474 LOW QUALITY PROTEIN: transcription elongation factor A protein 3-like K03145 TFIIS; transcription elongation factor S-II
E 121916779 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 121915320 SUPT5H; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
E 121916923 SUPT6H; transcription elongation factor SPT6 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 121926875 TTF2; LOW QUALITY PROTEIN: transcription termination factor 2 K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
E 121925146 PCF11; LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 121928708 CPSF1; cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 121919587 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 121914166 CPSF4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 121916397 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 121928727 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 121919527 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 121915129 SYMPK; symplekin K06100 SYMPK; symplekin
E 121936214 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 121927637 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 121922137 DXO; LOW QUALITY PROTEIN: decapping and exoribonuclease protein K14845 RAI1; RAT1-interacting protein
E 121927902 RPRD1B; LOW QUALITY PROTEIN: regulation of nuclear pre-mRNA domain-containing protein 1B K15559 RTT103; regulator of Ty1 transposition protein 103
E 121933089 RPRD1A; LOW QUALITY PROTEIN: regulation of nuclear pre-mRNA domain-containing protein 1A K15559 RTT103; regulator of Ty1 transposition protein 103
E 121916141 SFPQ; splicing factor, proline- and glutamine-rich isoform X1 K13219 SFPQ; splicing factor, proline- and glutamine-rich
E 121933492 SCAF8; LOW QUALITY PROTEIN: SR-related and CTD-associated factor 8 K13191 RBM16; RNA-binding protein 16
E 121924743 SCAF4; SR-related and CTD-associated factor 4 isoform X1 K13167 SCAF4; SR-related and CTD-associated factor 4
E 121936364 SETX; probable helicase senataxin isoform X1 K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E 121923266 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 121915964 PAF1; RNA polymerase II-associated factor 1 homolog K15174 PAF1; RNA polymerase II-associated factor 1
E 121929020 CDC73; parafibromin K15175 CDC73; parafibromin
E 121927815 CTR9; RNA polymerase-associated protein CTR9 homolog K15176 CTR9; RNA polymerase-associated protein CTR9
E 121934489 LEO1; RNA polymerase-associated protein LEO1 K15177 LEO1; RNA polymerase-associated protein LEO1
E 121922481 RTF1; RNA polymerase-associated protein RTF1 homolog isoform X1 K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E 121926021 NELFA; LOW QUALITY PROTEIN: negative elongation factor A K15179 WHSC2; negative elongation factor A
E 121936935 NELFB; negative elongation factor B K15180 COBRA1; negative elongation factor B
E 121929855 NELFCD; negative elongation factor C/D K15181 TH1L; negative elongation factor C/D
E 121922135 NELFE; negative elongation factor E isoform X1 K15182 RDBP; negative elongation factor E
D Super elongation complex (SEC)
E 121916608 ELL; RNA polymerase II elongation factor ELL K15183 ELL; RNA polymerase II elongation factor ELL
E 121920970 ELL2; RNA polymerase II elongation factor ELL2 isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 121931999 AFF1; AF4/FMR2 family member 1 isoform X1 K15184 AFF1; AF4/FMR2 family member 1
E 121920769 AFF4; AF4/FMR2 family member 4 isoform X1 K15185 AFF4; AF4/FMR2 family member 4
E 121932490 EAF1; ELL-associated factor 1 K15186 EAF; ELL-associated factor
E 121923209 MLLT3; protein AF-9 isoform X1 K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 121937341 MLLT1; protein ENL K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 121930655 cyclin-T2-like isoform X1 K15188 CCNT; cyclin T
E 121921729 CCNT1; cyclin-T1 K15188 CCNT; cyclin T
E 121936527 CDK9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D Little elongation complex (LEC)
E 121916608 ELL; RNA polymerase II elongation factor ELL K15183 ELL; RNA polymerase II elongation factor ELL
E 121920970 ELL2; RNA polymerase II elongation factor ELL2 isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 121928186 ICE1; little elongation complex subunit 1 isoform X1 K26143 ICE1; little elongation complex subunit 1
E 121933545 ICE2; little elongation complex subunit 2 isoform X1 K26144 ICE2; little elongation complex subunit 2
D Brd4/P-TEFb complex
E 121922148 BRD4; bromodomain-containing protein 4 isoform X1 K11722 BRD4; bromodomain-containing protein 4
E 121930655 cyclin-T2-like isoform X1 K15188 CCNT; cyclin T
E 121921729 CCNT1; cyclin-T1 K15188 CCNT; cyclin T
E 121936527 CDK9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 121935552 HEXIM1; protein HEXIM1 K15189 HEXIM1_2; protein HEXIM1/2
E 121935165 MEPCE; LOW QUALITY PROTEIN: 7SK snRNA methylphosphate capping enzyme K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E 121931182 LARP7; la-related protein 7 K15191 LARP7; La-related protein 7
E 121930655 cyclin-T2-like isoform X1 K15188 CCNT; cyclin T
E 121921729 CCNT1; cyclin-T1 K15188 CCNT; cyclin T
E 121936527 CDK9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D DBIRD complex
E 121932799 CCAR2; cell cycle and apoptosis regulator protein 2 K25816 CCAR2; cell cycle and apoptosis regulator protein 2
E 121929486 ZNF326; DBIRD complex subunit ZNF326 isoform X1 K13204 ZNF326; zinc finger protein 326
D Others
E 121916872 GTF2I; LOW QUALITY PROTEIN: general transcription factor II-I K03121 TFII-I; transcription initiation factor TFII-I
E 121916970 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1
E 121926342 BTAF1; TATA-binding protein-associated factor 172 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 121928344 DR1; protein Dr1 K21751 DR1; down-regulator of transcription 1
E 121915831 DRAP1; dr1-associated corepressor K21752 DRAP1; Dr1-associated corepressor
E 121935437 SPTY2D1; protein SPT2 homolog K15193 SPTY2D1; protein SPT2
E 121936305 AFF2; AF4/FMR2 family member 2 isoform X1 K15194 AFF2; AF4/FMR2 family member 2
E 121927005 AFF3; AF4/FMR2 family member 3 K15195 AFF3; AF4/FMR2 family member 3
E 121928345 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase isoform X1 K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E 121927977 CTDSP1; LOW QUALITY PROTEIN: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 121935163 CTDSPL; CTD small phosphatase-like protein isoform X1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 121920791 CTDSP2; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 121926288 IWS1; protein IWS1 homolog isoform X1 K17498 SPN1; transcription factor SPN1
E 121933255 CSRNP1; cysteine/serine-rich nuclear protein 1 isoform X1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 121917301 CSRNP3; cysteine/serine-rich nuclear protein 3 isoform X1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 121921115 CSRNP2; cysteine/serine-rich nuclear protein 2 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 121930454 RPAP1; LOW QUALITY PROTEIN: RNA polymerase II-associated protein 1 K20826 RPAP1; RNA polymerase II-associated protein 1
E 121928335 RPAP2; putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 121931786 RPAP3; LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3 K23002 RPAP3; RNA polymerase II-associated protein 3
E 121918984 CCNK; cyclin-K isoform X1 K23326 CCNK; cyclin K
E 121916231 GPN2; GPN-loop GTPase 2 isoform X1 K24104 GPN; GPN-loop GTPase
E 121916563 GPN3; GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
E 121932878 GPN1; GPN-loop GTPase 1 isoform X1 K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 121926702 POLR3A; DNA-directed RNA polymerase III subunit RPC1 isoform X1 K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 121930773 POLR3B; DNA-directed RNA polymerase III subunit RPC2 isoform X1 K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 121918868 POLR1C; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 121937374 DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 121915313 POLR3C; DNA-directed RNA polymerase III subunit RPC3 K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E 121935173 POLR3D; DNA-directed RNA polymerase III subunit RPC4 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 121914341 POLR3E; DNA-directed RNA polymerase III subunit RPC5 isoform X1 K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 121916037 POLR3GL; DNA-directed RNA polymerase III subunit RPC7-like K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 121931973 POLR3H; DNA-directed RNA polymerase III subunit RPC8 K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 121916814 DNA-directed RNA polymerase III subunit RPC9 isoform X1 K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 121914477 POLR3K; DNA-directed RNA polymerase III subunit RPC10 K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 121916705 POLR2E; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 121930320 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 121926503 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 121930027 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 121934267 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E 121930152 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E 121925254 GTF3A; transcription factor IIIA isoform X1 K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 121929368 TBPL1; TATA box-binding protein-like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121919685 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121936577 TBPL2; TATA box-binding protein-like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121919845 BRF1; LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa subunit K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 121935737 BRF2; transcription factor IIIB 50 kDa subunit K15197 BRF2; transcription factor IIIB 50 kDa subunit
E 121920664 BDP1; LOW QUALITY PROTEIN: transcription factor TFIIIB component B'' homolog K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 121914470 GTF3C1; general transcription factor 3C polypeptide 1 isoform X1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 121919910 GTF3C2; general transcription factor 3C polypeptide 2 isoform X1 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 121919568 GTF3C3; LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 121936077 GTF3C4; general transcription factor 3C polypeptide 4 isoform X1 K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E 121937320 GTF3C5; general transcription factor 3C polypeptide 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 121919610 GTF3C6; general transcription factor 3C polypeptide 6 isoform X1 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 121937320 GTF3C5; general transcription factor 3C polypeptide 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 121919568 GTF3C3; LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 121922433 SNAPC1; snRNA-activating protein complex subunit 1 isoform X1 K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 121928806 SNAPC2; snRNA-activating protein complex subunit 2 K15209 SNAPC2; snRNA-activating protein complex subunit 2
E 121923506 SNAPC3; snRNA-activating protein complex subunit 3 K15210 SNAPC3; snRNA-activating protein complex subunit 3
E 121936778 SNAPC4; snRNA-activating protein complex subunit 4 isoform X1 K09453 SNAPC4; snRNA-activating protein complex subunit 4
E 121934456 SNAPC5; snRNA-activating protein complex subunit 5 K15211 SNAPC5; snRNA-activating protein complex subunit 5
D Octamer transcription factors
E 121934746 POU2F3; POU domain, class 2, transcription factor 3 K09364 POU2F; POU domain transcription factor, class 2
E 121925248 POU2F1; POU domain, class 2, transcription factor 1 K09364 POU2F; POU domain transcription factor, class 2
E 121915971 POU2F2; POU domain, class 2, transcription factor 2 isoform X1 K09364 POU2F; POU domain transcription factor, class 2
E 121920281 POU domain, class 5, transcription factor 1-like K09367 POU5F; POU domain transcription factor, class 5
D Others
E 121928703 ZNF76; zinc finger protein 76 isoform X1 K20828 ZNF143_76; zinc finger protein 143/76
E 121919047 ZNF143; zinc finger protein 143 isoform X1 K20828 ZNF143_76; zinc finger protein 143/76
E 121929202 MAF1; repressor of RNA polymerase III transcription MAF1 homolog K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 121934645 POLR1A; DNA-directed RNA polymerase I subunit RPA1 K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 121931971 POLR1B; LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA2 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 121918868 POLR1C; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 121937374 DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 121924432 POLR1E; DNA-directed RNA polymerase I subunit RPA49 K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 121935510 POLR1F; DNA-directed RNA polymerase I subunit RPA43 K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E 121916038 POLR1G; DNA-directed RNA polymerase I subunit RPA34 K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34
E 121924023 POLR1H; DNA-directed RNA polymerase I subunit RPA12 K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E 121916705 POLR2E; LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 121930320 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 121926503 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 121930027 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 121934267 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
E 121930152 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E 121929368 TBPL1; TATA box-binding protein-like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121919685 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121936577 TBPL2; TATA box-binding protein-like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 121927907 TAF1B; LOW QUALITY PROTEIN: TATA box-binding protein-associated factor RNA polymerase I subunit B K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B
E 121923680 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1 K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C
E 121925109 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
C Other transcription-related factors
D UBF
E 121933095 UBTF; nucleolar transcription factor 1 K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 121914715 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E 121916779 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 121915320 SUPT5H; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E 121931125 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E 121922627 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A isoform X1 K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A
D CTDK-I complex
D Transcription termination factors
E 121922970 transcription termination factor 1-like isoform X1 K15225 TTF1; transcription termination factor 1
E 121936365 TTF1; transcription termination factor 1 isoform X1 K15225 TTF1; transcription termination factor 1
E 121934072 CAVIN1; caveolae-associated protein 1 K19387 CAVIN1; caveolae-associated protein 1
D Others
E 121925869 NOLC1; nucleolar and coiled-body phosphoprotein 1 K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 121929681 GTF2B; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 121921369 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024