+E Transcription factors KO
#
Transcription Factors - Serratia ureilytica
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D J0X03_21040 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D J0X03_19910 chbR; transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D J0X03_03285 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_05390 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_07970 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_07975 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_14260 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_16200 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_20775 robA; MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_21235 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D J0X03_19220 feaR; transcriptional regulator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D J0X03_03975 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D J0X03_12200 helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D J0X03_19205 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D J0X03_05650 alkA; DNA-3-methyladenine glycosylase 2 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D J0X03_04365 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_07835 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_08675 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_11550 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_11845 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_17055 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_17215 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_23530 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D J0X03_00630 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D J0X03_22845 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D J0X03_20690 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D J0X03_00495 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D J0X03_03715 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D J0X03_20455 leuO; transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D J0X03_21340 LysR family transcriptional regulator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D J0X03_18320 allS; HTH-type transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D J0X03_16135 cynR; transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D J0X03_10625 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D J0X03_09380 cbl; HTH-type transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D J0X03_06490 dsdC; DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D J0X03_03645 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D J0X03_21285 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D J0X03_12585 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D J0X03_16965 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D J0X03_20935 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D J0X03_08040 nac; nitrogen assimilation transcriptional regulator NAC K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D J0X03_02300 aaeR; HTH-type transcriptional activator AaeR K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D J0X03_12825 LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D J0X03_21165 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D J0X03_00565 hdfR; HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D J0X03_15585 deoR; DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D J0X03_01075 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D J0X03_12115 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D J0X03_04140 DeoR/GlpR transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D J0X03_03820 DeoR/GlpR transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D J0X03_05495 DNA-binding transcriptional repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D J0X03_01090 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D J0X03_11715 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_01950 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_04215 galR; HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_07540 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_10480 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_13650 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_16040 galS; HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_24050 rbsR; ribose operon transcriptional repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J0X03_23690 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D J0X03_00415 cytR; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D J0X03_20435 cra; catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D J0X03_03060 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D J0X03_21575 treR; HTH-type transcriptional regulator TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D J0X03_21375 LacI family DNA-binding transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D J0X03_12880 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D J0X03_01010 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D J0X03_07045 LacI family DNA-binding transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D J0X03_12590 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D J0X03_21635 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D J0X03_13510 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D J0X03_03000 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D J0X03_10160 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D J0X03_03320 pdhR; pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D J0X03_02685 exuR; transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D J0X03_00875 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D J0X03_02745 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D J0X03_04820 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D J0X03_06695 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D J0X03_13775 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D J0X03_05530 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D J0X03_11470 tetR; tetracycline resistance transcriptional repressor TetR K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D J0X03_03985 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D J0X03_16250 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D J0X03_18495 acrR; multidrug efflux transporter transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D J0X03_00135 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D J0X03_12840 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D J0X03_16425 TetR/AcrR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D J0X03_13465 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D J0X03_16875 TetR/AcrR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D J0X03_00505 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D J0X03_17295 cecR; transcriptional regulator CecR K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D J0X03_24000 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D J0X03_15315 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D J0X03_16515 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D J0X03_18680 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D J0X03_07830 autoinducer binding domain-containing protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D J0X03_21480 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D J0X03_23665 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D J0X03_05965 LuxR family transcriptional regulator K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D J0X03_08660 rcsA; transcriptional regulator RcsA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D J0X03_04105 response regulator transcription factor K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D J0X03_16230 LuxR family transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D J0X03_01130 malT; HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D J0X03_12785 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D J0X03_17005 winged helix DNA-binding protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D J0X03_04705 mprA; transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D J0X03_12360 winged helix-turn-helix transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D J0X03_23390 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D J0X03_11880 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D J0X03_18335 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D J0X03_01690 zntR; Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
C Fur family
D J0X03_17835 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D J0X03_01995 zur; zinc uptake transcriptional repressor Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D J0X03_01825 iclR; glyoxylate bypass operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D J0X03_08165 helix-turn-helix domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D J0X03_18310 allR; HTH-type transcriptional repressor AllR K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D J0X03_13310 kdgR; DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D J0X03_01405 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D J0X03_11110 FNR family transcription factor K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D J0X03_00825 cyclic nucleotide-binding domain-containing protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D J0X03_05245 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D J0X03_22095 nsrR; nitric oxide-sensing transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D J0X03_14275 Rrf2 family transcriptional regulator K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D J0X03_08720 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D J0X03_11805 helix-turn-helix transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D J0X03_12695 helix-turn-helix transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D J0X03_14350 mntR; manganese-binding transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D J0X03_10055 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D J0X03_22690 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D J0X03_02175 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D J0X03_20790 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D J0X03_16505 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D J0X03_21920 helix-turn-helix domain-containing protein K07724 ner; Ner family transcriptional regulator
D J0X03_20500 sgrR; HTH-type transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D J0X03_20840 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D J0X03_07450 puuR; HTH-type transcriptional regulator PuuR K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D J0X03_13575 puuR; HTH-type transcriptional regulator PuuR K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D J0X03_02420 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D J0X03_12030 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D J0X03_18435 helix-turn-helix domain-containing protein K02647 cdaR; carbohydrate diacid regulator
D J0X03_05875 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein
D J0X03_17475 modE; molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D J0X03_11610 PAS domain-containing protein K21829 dauR; D-arginine utilization repressor
D J0X03_09100 DNA-binding transcriptional regulator K07726 K07726; putative transcriptional regulator
D J0X03_14125 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D J0X03_00430 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D J0X03_09325 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D J0X03_18965 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D J0X03_18745 bolA; transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D J0X03_22770 rfaH; transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH
D J0X03_21930 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D J0X03_17875 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D J0X03_12505 ROK family transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D J0X03_23625 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor
D J0X03_08075 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D J0X03_10910 tyrR; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D J0X03_04545 cadC; lysine decarboxylation/transport transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D J0X03_05910 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D J0X03_08525 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D J0X03_10870 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D J0X03_10885 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C
D J0X03_02910 dhaR; PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR K05880 dhaR; transcriptional activator for dhaKLM operon
D J0X03_02365 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D J0X03_16470 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D J0X03_03255 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D J0X03_03435 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D J0X03_14200 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D J0X03_18855 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D J0X03_19310 crl; sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D J0X03_20425 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0