+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sutterella megalosphaeroides

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SUTMEG_15160 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SUTMEG_03490 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SUTMEG_00950 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SUTMEG_07260 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SUTMEG_11050 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SUTMEG_04060 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SUTMEG_05710 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SUTMEG_15160 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SUTMEG_03490 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SUTMEG_07160 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SUTMEG_00950 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SUTMEG_07260 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SUTMEG_01760 xth-1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SUTMEG_05350 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SUTMEG_19860 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SUTMEG_07810 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SUTMEG_07340 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SUTMEG_00630 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E SUTMEG_03530 uvrA2; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E SUTMEG_19990 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E SUTMEG_15890 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E SUTMEG_06180 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SUTMEG_07340 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SUTMEG_07810 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SUTMEG_02820 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SUTMEG_02830 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SUTMEG_03140 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SUTMEG_05170 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SUTMEG_06960 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SUTMEG_07890 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SUTMEG_04510 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SUTMEG_04930 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SUTMEG_05680 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SUTMEG_07460 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SUTMEG_04990 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SUTMEG_02010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SUTMEG_05080 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SUTMEG_06150 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SUTMEG_15590 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SUTMEG_18660 dnaQ_1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SUTMEG_18710 dnaQ_2; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SUTMEG_20220 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SUTMEG_07810 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SUTMEG_06180 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SUTMEG_00650 hypothetical protein K03111 ssb; single-strand DNA-binding protein E SUTMEG_11940 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SUTMEG_14480 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SUTMEG_19220 hypothetical protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SUTMEG_19230 hypothetical protein K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E SUTMEG_19210 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SUTMEG_00010 recA; protein RecA K03553 recA; recombination protein RecA E SUTMEG_04220 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SUTMEG_04210 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SUTMEG_04230 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SUTMEG_02260 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SUTMEG_19290 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E SUTMEG_04930 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SUTMEG_06780 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SUTMEG_06770 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SUTMEG_00010 recA; protein RecA K03553 recA; recombination protein RecA E SUTMEG_06820 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SUTMEG_19000 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SUTMEG_19860 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SUTMEG_18840 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SUTMEG_20180 recR; recombination protein RecR K06187 recR; recombination protein RecR E SUTMEG_05020 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SUTMEG_04220 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SUTMEG_04210 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SUTMEG_04230 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SUTMEG_16360 cas1-2; CRISPR-associated endonuclease Cas1 2 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E SUTMEG_06780 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SUTMEG_06770 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SUTMEG_20390 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SUTMEG_02000 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F SUTMEG_17340 hup_2; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F SUTMEG_13610 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SUTMEG_19860 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SUTMEG_18840 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SUTMEG_20180 recR; recombination protein RecR K06187 recR; recombination protein RecR F SUTMEG_07810 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SUTMEG_00280 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SUTMEG_19730 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SUTMEG_20350 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SUTMEG_04930 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F SUTMEG_02670 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SUTMEG_00630 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F SUTMEG_03530 uvrA2; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F SUTMEG_19990 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F SUTMEG_11900 hypothetical protein K03746 hns; DNA-binding protein H-NS F SUTMEG_12650 hypothetical protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SUTMEG_07310 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SUTMEG_12470 SOS mutagenesis and repair protein UmuC K03502 umuC; DNA polymerase V D SUTMEG_14770 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D SUTMEG_12460 protein impA' K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SUTMEG_00010 recA; protein RecA K03553 recA; recombination protein RecA D SUTMEG_05020 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SUTMEG_00650 hypothetical protein K03111 ssb; single-strand DNA-binding protein D SUTMEG_21130 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SUTMEG_18180 ATP-dependent DNA helicase-like protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SUTMEG_11050 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SUTMEG_04060 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SUTMEG_05710 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SUTMEG_12240 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SUTMEG_12230 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024