+E Transcription factors KO #

  Transcription Factors - Saccharomonospora viridis

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Svir_31420 DNA-3-methyladenine glycosylase II/DNA-O6-methylguanine--protein-cysteine S-methyltransferase/Transcriptional regulator Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D Svir_26180 transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D Svir_18480 transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator C DeoR family D Svir_16690 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor C LacI family D Svir_23440 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Svir_07090 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Svir_13230 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Svir_38350 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Svir_11580 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D Svir_15390 transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D Svir_34690 transcriptional regulator, GntR family K24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator D Svir_14010 transcriptional regulator K03710 K03710; GntR family transcriptional regulator D Svir_33520 transcriptional regulator K03710 K03710; GntR family transcriptional regulator D Svir_18050 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Svir_21660 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Svir_09150 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D Svir_22500 transcriptional regulator, TetR family K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D Svir_17960 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D Svir_19020 transcriptional regulator, TetR family K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D Svir_21870 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family C MerR family D Svir_02170 predicted transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Svir_10940 transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D Svir_38550 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D Svir_35010 predicted cobalamin binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D Svir_21260 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Svir_13670 zinc uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Svir_20420 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D Svir_36340 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D Svir_21120 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator C IclR family D Svir_09640 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Svir_20720 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Svir_21340 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Svir_27090 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Svir_13060 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D Svir_36130 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Svir_26880 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family D Svir_22810 rrf2 family protein, putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D Svir_02010 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Svir_25900 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Svir_13680 transcriptional regulator, ArsR family K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D Svir_28370 predicted transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D Svir_25140 Helix-turn-helix protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator C PadR family D Svir_26090 predicted transcriptional regulator K26740 vanR; PadR family transcriptional regulator, regulator of vanillate utilization D Svir_09510 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator C Other families D Svir_27510 Mn-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D Svir_33150 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D Svir_37280 predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Svir_05900 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Svir_02840 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor D Svir_26750 hypothetical protein K27097 espR; ESX-1-secreted protein regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D Svir_36240 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_04680 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_31070 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_30700 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_08190 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_12870 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_07550 Transcription factor WhiB-like protein K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D Svir_08710 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Svir_36760 uncharacterized conserved protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Svir_20880 purine catabolism regulator-like protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D Svir_29840 DNA-binding transcriptional activator of the SARP family K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D Svir_39730 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Svir_35090 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Svir_25580 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D Svir_13540 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Svir_19070 phenylacetic acid-responsive transcriptional repressor K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D Svir_15540 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Svir_39570 predicted transcriptional regulator K07735 algH; putative transcriptional regulator D Svir_27580 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D Svir_24980 mraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0