+E Transcription factors KO
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Transcription Factors - Saccharomonospora viridis
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Svir_31420 DNA-3-methyladenine glycosylase II/DNA-O6-methylguanine--protein-cysteine S-methyltransferase/Transcriptional regulator Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D Svir_26180 transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D Svir_18480 transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
C DeoR family
D Svir_16690 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D Svir_23440 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Svir_07090 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Svir_13230 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Svir_38350 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Svir_11580 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D Svir_15390 transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Svir_34690 transcriptional regulator, GntR family K24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator
D Svir_14010 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D Svir_33520 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D Svir_18050 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Svir_21660 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Svir_09150 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D Svir_22500 transcriptional regulator, TetR family K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D Svir_17960 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D Svir_19020 transcriptional regulator, TetR family K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D Svir_21870 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
D Svir_02170 predicted transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Svir_10940 transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D Svir_38550 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D Svir_35010 predicted cobalamin binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D Svir_21260 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Svir_13670 zinc uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Svir_20420 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D Svir_36340 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D Svir_21120 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D Svir_09640 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Svir_20720 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Svir_21340 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Svir_27090 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Svir_13060 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D Svir_36130 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Svir_26880 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D Svir_22810 rrf2 family protein, putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D Svir_02010 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Svir_25900 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Svir_13680 transcriptional regulator, ArsR family K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D Svir_28370 predicted transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D Svir_25140 Helix-turn-helix protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D Svir_26090 predicted transcriptional regulator K26740 vanR; PadR family transcriptional regulator, regulator of vanillate utilization
D Svir_09510 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D Svir_27510 Mn-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D Svir_33150 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Svir_37280 predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Svir_05900 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Svir_02840 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
D Svir_26750 hypothetical protein K27097 espR; ESX-1-secreted protein regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D Svir_36240 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_04680 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_31070 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_30700 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_08190 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_12870 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_07550 Transcription factor WhiB-like protein K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Svir_08710 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Svir_36760 uncharacterized conserved protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Svir_20880 purine catabolism regulator-like protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Svir_29840 DNA-binding transcriptional activator of the SARP family K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D Svir_39730 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Svir_35090 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Svir_25580 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D Svir_13540 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Svir_19070 phenylacetic acid-responsive transcriptional repressor K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D Svir_15540 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Svir_39570 predicted transcriptional regulator K07735 algH; putative transcriptional regulator
D Svir_27580 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D Svir_24980 mraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0