+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingobium sp. YBL2

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TZ53_19785 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TZ53_19290 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E TZ53_11625 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TZ53_03585 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TZ53_19770 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D TZ53_03180 S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D TZ53_03840 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TZ53_15050 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TZ53_01585 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TZ53_19785 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TZ53_14695 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D TZ53_19290 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D TZ53_13960 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E TZ53_11625 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TZ53_11910 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TZ53_17150 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TZ53_19185 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TZ53_13045 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E TZ53_03585 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TZ53_04645 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E TZ53_13485 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TZ53_19770 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TZ53_00215 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TZ53_04445 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TZ53_06515 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E TZ53_02865 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TZ53_15985 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TZ53_02645 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TZ53_21220 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E TZ53_03015 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E TZ53_16215 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E TZ53_17365 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TZ53_03875 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TZ53_02645 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E TZ53_15985 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TZ53_13660 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TZ53_13655 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TZ53_10860 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TZ53_08445 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TZ53_16655 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TZ53_04425 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E TZ53_19470 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E TZ53_03545 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TZ53_03085 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TZ53_19210 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TZ53_02700 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TZ53_14380 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E TZ53_04675 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TZ53_18795 DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E TZ53_00595 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TZ53_04535 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TZ53_17245 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TZ53_15985 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TZ53_17365 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TZ53_03875 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TZ53_10330 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TZ53_23155 hypothetical protein K03111 ssb; single-strand DNA-binding protein E TZ53_23715 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TZ53_22765 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TZ53_22880 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TZ53_22390 DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E TZ53_03950 hypothetical protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TZ53_02880 recombinase RecA K03553 recA; recombination protein RecA E TZ53_03645 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TZ53_03655 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TZ53_03160 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TZ53_14705 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TZ53_12235 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TZ53_12240 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E TZ53_22480 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TZ53_02880 recombinase RecA K03553 recA; recombination protein RecA E TZ53_13800 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TZ53_02775 recombinase RecF K03629 recF; DNA replication and repair protein RecF E TZ53_16665 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TZ53_02865 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TZ53_16310 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E TZ53_14750 recombinase RecR K06187 recR; recombination protein RecR E TZ53_15980 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TZ53_03645 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TZ53_03655 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TZ53_03160 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E TZ53_18730 DNA helicase UvrD K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E TZ53_12340 uvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E TZ53_18725 helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E TZ53_12235 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TZ53_12240 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E TZ53_22480 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E TZ53_13700 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E TZ53_20780 DNA repair protein K10979 ku; DNA end-binding protein Ku E TZ53_20775 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TZ53_17455 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TZ53_04640 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TZ53_12730 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F TZ53_19085 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TZ53_05935 integration host factor K03530 hupB; DNA-binding protein HU-beta F TZ53_08280 integration host factor K03530 hupB; DNA-binding protein HU-beta F TZ53_23805 integration host factor K03530 hupB; DNA-binding protein HU-beta F TZ53_17260 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta F TZ53_17920 integration host factor K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TZ53_02865 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TZ53_16310 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F TZ53_14750 recombinase RecR K06187 recR; recombination protein RecR F TZ53_15985 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F TZ53_11505 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F TZ53_17320 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta F TZ53_25020 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F TZ53_10630 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TZ53_21220 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F TZ53_03015 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TZ53_03820 DNA repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D TZ53_02880 recombinase RecA K03553 recA; recombination protein RecA D TZ53_15185 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D TZ53_15980 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TZ53_21395 hypothetical protein K14160 imuA; protein ImuA D TZ53_21390 nucleotidyltransferase K14161 imuB; protein ImuB D TZ53_21385 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D TZ53_10330 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TZ53_23155 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TZ53_23715 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TZ53_22765 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TZ53_22880 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TZ53_03040 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TZ53_11520 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D TZ53_04790 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D TZ53_12515 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D TZ53_17690 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D TZ53_03840 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TZ53_15050 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TZ53_01585 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TZ53_11425 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TZ53_11435 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024