+F Repair protein KO
#
DNA Repair and Recombination Proteins - Picosynechococcus sp. PCC 7002
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SYNPCC7002_A2796 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SYNPCC7002_A2741 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SYNPCC7002_A2455 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SYNPCC7002_A0060 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SYNPCC7002_A0616 mutT; mutator, NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SYNPCC7002_A0155 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SYNPCC7002_A2796 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SYNPCC7002_A2298 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E SYNPCC7002_A0044 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E SYNPCC7002_A2741 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SYNPCC7002_A1816 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SYNPCC7002_A2455 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SYNPCC7002_A1293 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SYNPCC7002_A1579 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E SYNPCC7002_A0980 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E SYNPCC7002_A1737 recJ; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E SYNPCC7002_A2647 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SYNPCC7002_A1468 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E SYNPCC7002_A2255 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E SYNPCC7002_A0237 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E SYNPCC7002_A0531 pcrA; ATP-dependent DNA helicase II PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SYNPCC7002_A2103 UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SYNPCC7002_A2647 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SYNPCC7002_A2045 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SYNPCC7002_A2043 rpoC2; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SYNPCC7002_A2044 rpoC1; DNA-directed RNA polymerase, gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SYNPCC7002_A1042 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SYNPCC7002_A0614 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F SYNPCC7002_A1287 mfd; Transcription-repair coupling factor (TRCF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SYNPCC7002_A0178 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E SYNPCC7002_A2581 mutS; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E SYNPCC7002_A0649 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E SYNPCC7002_A1408 dnaE-C; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SYNPCC7002_A2384 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SYNPCC7002_A1263 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SYNPCC7002_A1567 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E SYNPCC7002_A1256 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SYNPCC7002_A1704 dnaX; DNA-directed DNA polymerase III chain dnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SYNPCC7002_A2647 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SYNPCC7002_A0531 pcrA; ATP-dependent DNA helicase II PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SYNPCC7002_A2103 UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SYNPCC7002_A0119 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E SYNPCC7002_A1620 dam; adenine-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SYNPCC7002_A0426 recA; recA protein (recombinase A) K03553 recA; recombination protein RecA
E SYNPCC7002_A1270 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E SYNPCC7002_A1390 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SYNPCC7002_A0630 ruvC; Holliday juction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SYNPCC7002_A0840 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E SYNPCC7002_A0365 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E SYNPCC7002_A2627 RecF/RecN/SMC N terminal domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E SYNPCC7002_A2342 sbcD; probable exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E SYNPCC7002_A0426 recA; recA protein (recombinase A) K03553 recA; recombination protein RecA
E SYNPCC7002_A0978 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E SYNPCC7002_A2277 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF
E SYNPCC7002_A1856 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SYNPCC7002_C0005 conserved hypothetical protein, MloB like protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SYNPCC7002_A0980 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E SYNPCC7002_A1737 recJ; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E SYNPCC7002_A0757 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E SYNPCC7002_A1744 recR; recombination protein K06187 recR; recombination protein RecR
E SYNPCC7002_A0451 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E SYNPCC7002_A1270 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E SYNPCC7002_A1390 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SYNPCC7002_A0630 ruvC; Holliday juction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E SYNPCC7002_D0019 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
E SYNPCC7002_A1777 cas; putative CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
E SYNPCC7002_F0054 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E SYNPCC7002_A2627 RecF/RecN/SMC N terminal domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E SYNPCC7002_A2342 sbcD; probable exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SYNPCC7002_A0826 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SYNPCC7002_A1938 gvrA; DNA topoisomerase chain A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SYNPCC7002_A1343 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SYNPCC7002_A2546 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F SYNPCC7002_A1965 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SYNPCC7002_A0980 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F SYNPCC7002_A1737 recJ; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F SYNPCC7002_A0757 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F SYNPCC7002_A1744 recR; recombination protein K06187 recR; recombination protein RecR
F SYNPCC7002_A2647 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F SYNPCC7002_A1005 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SYNPCC7002_A1900 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SYNPCC7002_A1468 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F SYNPCC7002_A2255 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D SYNPCC7002_A0426 recA; recA protein (recombinase A) K03553 recA; recombination protein RecA
D SYNPCC7002_A1849 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D SYNPCC7002_A0451 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SYNPCC7002_A0119 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D SYNPCC7002_A1236 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D SYNPCC7002_A0060 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SYNPCC7002_A0616 mutT; mutator, NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SYNPCC7002_A0155 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SYNPCC7002_A1350 nrdA; ribonucleotide reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SYNPCC7002_A0382 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024