+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leadbettera azotonutricia

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TREAZ_3432 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TREAZ_0698 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TREAZ_0126 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E TREAZ_3184 endonuclease III (DNA-(apurinic or apyrimidinic site)lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E TREAZ_2835 dna repair helicase Rad25 (general transcription and dnarepair factor iih subunit rad25) (tfiih subunit rad25) K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TREAZ_2590 CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TREAZ_0640 CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TREAZ_0540 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TREAZ_3432 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TREAZ_3431 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E TREAZ_0753 DNA polymerase domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TREAZ_3119 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TREAZ_0698 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TREAZ_2090 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E TREAZ_0126 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E TREAZ_3184 endonuclease III (DNA-(apurinic or apyrimidinic site)lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TREAZ_0245 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E TREAZ_1212 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TREAZ_0569 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TREAZ_2726 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TREAZ_3658 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E TREAZ_1258 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E TREAZ_1678 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E TREAZ_2736 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TREAZ_0154 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TREAZ_2726 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E TREAZ_0569 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TREAZ_1283 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TREAZ_1282 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TREAZ_2675 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TREAZ_3499 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta F TREAZ_0137 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TREAZ_3632 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TREAZ_0550 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E TREAZ_1000 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E TREAZ_3424 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E TREAZ_3426 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TREAZ_3425 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TREAZ_3101 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TREAZ_2338 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TREAZ_1347 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TREAZ_0939 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TREAZ_1792 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TREAZ_0569 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TREAZ_2736 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TREAZ_0154 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TREAZ_2243 single-strand DNA binding protein family K03111 ssb; single-strand DNA-binding protein E TREAZ_0631 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TREAZ_2396 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E TREAZ_2514 patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TREAZ_0514 recA; RecA protein K03553 recA; recombination protein RecA E TREAZ_0477 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TREAZ_0478 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TREAZ_0473 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TREAZ_0754 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TREAZ_2870 DNA repair exonuclease, SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TREAZ_2868 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TREAZ_0514 recA; RecA protein K03553 recA; recombination protein RecA E TREAZ_1744 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TREAZ_2337 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E TREAZ_3099 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TREAZ_0667 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TREAZ_0390 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TREAZ_1212 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TREAZ_1210 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E TREAZ_1794 recR; recombination protein RecR K06187 recR; recombination protein RecR E TREAZ_0824 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TREAZ_0477 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TREAZ_0478 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TREAZ_0473 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E TREAZ_2810 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TREAZ_2870 DNA repair exonuclease, SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TREAZ_2868 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TREAZ_2351 gyrA_2; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TREAZ_2341 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TREAZ_0898 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TREAZ_1212 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TREAZ_1210 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F TREAZ_1794 recR; recombination protein RecR K06187 recR; recombination protein RecR F TREAZ_0569 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F TREAZ_0110 DNA-binding protein HU (HBbu) K04764 ihfA; integration host factor subunit alpha F TREAZ_2492 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F TREAZ_1334 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TREAZ_1314 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TREAZ_3658 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F TREAZ_1258 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TREAZ_1048 putative DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D TREAZ_1159 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D TREAZ_0311 putative DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D TREAZ_0514 recA; RecA protein K03553 recA; recombination protein RecA D TREAZ_1346 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D TREAZ_0824 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TREAZ_1432 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D TREAZ_2243 single-strand DNA binding protein family K03111 ssb; single-strand DNA-binding protein D TREAZ_0631 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TREAZ_2771 putative regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TREAZ_0586 DinG-like protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D TREAZ_0023 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D TREAZ_2590 CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TREAZ_0640 CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TREAZ_0540 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TREAZ_1519 B12-dependent ribonucleoside diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D TREAZ_3135 DHH superfamily protein, subfamily 1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D TREAZ_3335 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024