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Transfer RNA Biogenesis - Thiobacillus denitrificans
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D Tbd_2133 putative ribonuclease I K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D Tbd_2360 putative tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D Tbd_2359 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Tbd_1734 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Tbd_2112 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Tbd_1857 isoleucyl-tRNA synthetase, class Ia K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Tbd_2445 leucyl-tRNA synthetase, class Ia K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Tbd_0860 methionyl-tRNA synthetase, class Ia K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Tbd_0850 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Tbd_2782 arginyl-tRNA synthetase, class Ic K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Tbd_0893 lysyl-tRNA synthetase, class-2 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Tbd_0442 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D Tbd_0553 alanyl-tRNA synthetase, class IIc K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Tbd_1007 threonyl-tRNA synthetase, class IIa K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Tbd_1229 seryl-tRNA synthetase, class IIa K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Tbd_1902 Cysteinyl-tRNA synthetase, class Ia K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Tbd_0577 valyl-tRNA synthetase, class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Tbd_0595 Histidyl-tRNA synthetase, class IIa K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Tbd_1011 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Tbd_1012 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Tbd_0459 tyrosyl-tRNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Tbd_1525 tryptophanyl-tRNA synthetase, class Ib K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D Tbd_1705 probable HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D Tbd_2125 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D Tbd_1916 tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Tbd_0695 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D Tbd_1164 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D Tbd_2460 probable Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Tbd_1512 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Tbd_2824 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Tbd_2808 Glucose-inhibited division protein A subfamily K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Tbd_1021 selenide water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D Tbd_2826 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Tbd_R0002 RNA component of RNaseP K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D Tbd_0477 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Tbd_2575 ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D Tbd_2133 putative ribonuclease I K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D Tbd_2360 putative tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D Tbd_2359 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D Tbd_1005 2',5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D Tbd_2430 ABC transporter ATPase K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Tbd_2445 leucyl-tRNA synthetase, class Ia K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Tbd_2112 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D Tbd_0459 tyrosyl-tRNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Tbd_1525 tryptophanyl-tRNA synthetase, class Ib K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Tbd_1007 threonyl-tRNA synthetase, class IIa K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Tbd_1857 isoleucyl-tRNA synthetase, class Ia K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Tbd_0893 lysyl-tRNA synthetase, class-2 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Tbd_0553 alanyl-tRNA synthetase, class IIc K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Tbd_0577 valyl-tRNA synthetase, class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Tbd_0860 methionyl-tRNA synthetase, class Ia K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Tbd_1229 seryl-tRNA synthetase, class IIa K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Tbd_0442 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Tbd_2348 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Tbd_2347 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Tbd_1902 Cysteinyl-tRNA synthetase, class Ia K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Tbd_1734 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Tbd_0850 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Tbd_2782 arginyl-tRNA synthetase, class Ic K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Tbd_1011 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Tbd_1012 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Tbd_0595 Histidyl-tRNA synthetase, class IIa K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Tbd_2709 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D Tbd_0677 YbaK-like protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D Tbd_1216 probable cytosine/adenosine deaminases K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D Tbd_2456 dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D Tbd_2706 tRNA-i(6)A37 modification enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D Tbd_1161 RNA methyltransferase TrmH, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D Tbd_2125 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Tbd_2375 tRNA (guanine-N1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Tbd_2824 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Tbd_2407 RNA methyltransferase CspR K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Tbd_0615 tRNA/rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D Tbd_1916 tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Tbd_0695 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Tbd_0658 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D Tbd_0851 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Tbd_2508 putative cell cycle control ATPase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Tbd_1254 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Tbd_0574 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Tbd_1982 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Tbd_2481 DsrH protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D Tbd_2482 DsrF protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D Tbd_2483 DsrE protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D Tbd_2326 putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Tbd_1926 putative dissimilatory sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Tbd_1166 Iron-sulphur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D Tbd_1164 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Tbd_2098 glycine cleavage T-protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D Tbd_2808 Glucose-inhibited division protein A subfamily K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Tbd_1512 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Tbd_1641 conserved hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D Tbd_2074 queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Tbd_2202 ExsB ATPase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Tbd_2184 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Tbd_2314 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Tbd_2203 radical activating enzyme; radical SAM family K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Tbd_1227 conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Tbd_1520 4Fe-4S ferredoxin protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Tbd_1021 selenide water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Tbd_1757 rhodanese-like protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D Tbd_2075 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Tbd_0589 cell cycle protein MesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Tbd_1725 glycoprotease, (M22) metallo-protease family K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Tbd_2460 probable Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Tbd_2384 o-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Tbd_0522 HesA/MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C Tbd_0608 exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1]
C Tbd_0693 polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024