+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thiobacillus denitrificans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Tbd_2377 methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Tbd_2130 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Tbd_2021 Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Tbd_0027 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Tbd_2586 DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Tbd_2377 methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Tbd_1481 putative phage DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Tbd_0703 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Tbd_1723 putative phage DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Tbd_2436 3-methyladenine DNA glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Tbd_2130 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Tbd_0383 formamidopyrimidine-DNA glycolase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Tbd_2021 Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Tbd_2435 exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Tbd_0254 DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E Tbd_1771 RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Tbd_0624 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Tbd_2453 DNA polymerase A K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Tbd_0436 Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Tbd_1568 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Tbd_0701 Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Tbd_1306 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Tbd_2449 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Tbd_2453 DNA polymerase A K02335 polA; DNA polymerase I [EC:2.7.7.7] E Tbd_0624 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Tbd_0398 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Tbd_0399 RNA polymerase I subunit A K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Tbd_0430 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Tbd_0472 RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Tbd_1656 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Tbd_1159 MutS 1 protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Tbd_1517 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Tbd_1511 Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Tbd_0881 Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Tbd_0858 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Tbd_0002 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Tbd_0579 putative DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E Tbd_2443 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Tbd_1542 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Tbd_1662 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Tbd_0827 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Tbd_0089 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Tbd_0515 DNA polymerase subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Tbd_0624 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Tbd_1306 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Tbd_2449 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Tbd_0438 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Tbd_1812 DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Tbd_2197 RecA DNA recombination protein K03553 recA; recombination protein RecA E Tbd_2213 DNA recombination protein, RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Tbd_2211 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Tbd_2214 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Tbd_2781 Primosomal protein n K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Tbd_2104 putative primosomal replication protein K02686 priB; primosomal replication protein N D RecFOR pathway proteins E Tbd_2197 RecA DNA recombination protein K03553 recA; recombination protein RecA E Tbd_0965 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Tbd_0469 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Tbd_2681 Predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Tbd_1077 Predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Tbd_1771 RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Tbd_2084 Recombination protein O, RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Tbd_0517 RecR protein K06187 recR; recombination protein RecR E Tbd_2030 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Tbd_2213 DNA recombination protein, RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Tbd_2211 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Tbd_2214 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E Tbd_0033 conserved hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Tbd_0034 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E Tbd_2221 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Tbd_2246 putative Ku-like DNA-end-binding protein K10979 ku; DNA end-binding protein Ku E Tbd_2247 DNA ligase, ATP-dependent, putative K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Tbd_0948 DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Tbd_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Tbd_0010 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F Tbd_0745 conserved hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Tbd_1674 Histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Tbd_0007 Histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Tbd_1771 RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Tbd_2084 Recombination protein O, RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Tbd_0517 RecR protein K06187 recR; recombination protein RecR F Tbd_0624 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Tbd_2457 Transcriptional Regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F Tbd_1013 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F Tbd_0957 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F Tbd_0896 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Tbd_0436 Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Tbd_1568 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D Tbd_2197 RecA DNA recombination protein K03553 recA; recombination protein RecA D Tbd_1483 peptidase S24, LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Tbd_2030 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Tbd_0830 conserved hypothetical protein K14160 imuA; protein ImuA D Tbd_0829 conserved hypothetical protein K14161 imuB; protein ImuB D Tbd_0828 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Tbd_0438 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Tbd_2198 putative regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Tbd_1446 DNA polymerase X K02347 polX; DNA polymerase (family X) C DNA helicases D Tbd_0166 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Tbd_0997 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Tbd_0027 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Tbd_2635 hypothetical protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D Tbd_2586 DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Tbd_1976 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Tbd_0058 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Tbd_1975 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024