+D GENES KO #

  KEGG Orthology (KO) - Thermoanaerobacter brockii

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tbo00010] D Thebr_0593 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_2201 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_0713 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_0507 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thebr_2162 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thebr_2040 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Thebr_0755 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thebr_0753 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thebr_0754 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thebr_0239 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Thebr_0756 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thebr_0757 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thebr_0702 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thebr_1386 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Thebr_0815 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_1890 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_0298 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_1178 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_0477 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_1179 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0478 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_2046 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_1991 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thebr_1990 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thebr_1869 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:tbo00020] D Thebr_1931 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_1178 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_0477 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_1179 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0478 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_1180 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Thebr_0479 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Thebr_1177 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Thebr_0476 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Thebr_2217 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Thebr_2216 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Thebr_0815 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thebr_1890 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_0298 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tbo00030] D Thebr_0713 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thebr_1002 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thebr_2108 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thebr_0615 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thebr_1001 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thebr_1340 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thebr_0504 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thebr_0505 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thebr_0639 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Thebr_2151 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thebr_1392 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Thebr_2087 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Thebr_1874 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_0168 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Thebr_2018 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_2021 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_2110 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_2118 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_0618 Carbohydrate kinase, FGGY-like protein K25031 gntK; gluconokinase [EC:2.7.1.12] D Thebr_2019 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Thebr_0872 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Thebr_2112 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203] D Thebr_2114 phosphotransferase system PTS sorbose-specific IIC subunit K17466 dgaC; D-glucosaminate PTS system EIIC component D Thebr_2162 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thebr_2040 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_0507 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:tbo00040] D Thebr_2122 SAF domain protein K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D Thebr_1719 SAF domain protein K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D Thebr_1718 Altronate dehydratase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D Thebr_2121 Altronate dehydratase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D Thebr_1592 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thebr_1340 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thebr_2103 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Thebr_2104 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Thebr_0901 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:tbo00051] D Thebr_0647 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Thebr_0765 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_0544 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Thebr_1665 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thebr_2225 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thebr_0901 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_0507 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thebr_1986 Mannitol dehydrogenase domain protein K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D Thebr_0157 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Thebr_2104 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Thebr_2162 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thebr_2040 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Thebr_0755 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thebr_2151 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thebr_0342 PTS system, fructose subfamily, IIA subunit K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D Thebr_0159 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thebr_2115 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thebr_2113 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Thebr_1987 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D Thebr_1989 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:tbo00052] D Thebr_0621 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Thebr_2052 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thebr_0620 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thebr_0622 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thebr_1592 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_0593 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_2201 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_0629 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thebr_2228 Beta-galactosidase trimerisation domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thebr_0628 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Thebr_2126 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D Thebr_2125 phosphotransferase system lactose/cellobiose-specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_0507 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thebr_2120 Mandelate racemase/muconate lactonizing protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D Thebr_0646 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D Thebr_0006 glycoside hydrolase family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism D Thebr_2029 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D Thebr_2030 PTS system ascorbate-specific transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component C 00500 Starch and sucrose metabolism [PATH:tbo00500] D Thebr_0646 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D Thebr_0006 glycoside hydrolase family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Thebr_1592 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thebr_1974 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thebr_2098 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thebr_1738 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thebr_1992 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thebr_1740 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thebr_1993 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thebr_1739 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Thebr_1995 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Thebr_1991 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thebr_1990 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thebr_0714 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Thebr_0694 alpha amylase catalytic region K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D Thebr_0271 Dextranase K05988 dexA; dextranase [EC:3.2.1.11] D Thebr_0273 hypothetical protein K05988 dexA; dextranase [EC:3.2.1.11] D Thebr_2051 hypothetical protein K16146 pep2; maltokinase [EC:2.7.1.175] D Thebr_2050 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D Thebr_1553 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6] D Thebr_1869 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thebr_0686 alpha amylase catalytic region K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D Thebr_0690 alpha amylase catalytic region K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D Thebr_1548 glycoside hydrolase family 65 central catalytic K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_0593 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_2201 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_0713 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thebr_0647 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tbo00520] D Thebr_1869 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thebr_1870 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D Thebr_2077 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Thebr_1018 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Thebr_0647 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Thebr_0484 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thebr_0483 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Thebr_0167 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Thebr_0110 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_0836 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_2146 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_0682 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thebr_0593 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_2201 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_1592 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thebr_0621 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Thebr_2052 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thebr_0620 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thebr_0622 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thebr_2115 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thebr_2113 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Thebr_0713 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thebr_0765 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Thebr_0544 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Thebr_2225 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thebr_1665 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] C 00620 Pyruvate metabolism [PATH:tbo00620] D Thebr_1890 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_0298 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_1178 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_0477 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_1179 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0478 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0815 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thebr_1324 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Thebr_1325 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thebr_0702 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thebr_0750 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Thebr_2046 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thebr_1074 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Thebr_1056 beta-lactamase domain-containing protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Thebr_0347 malic protein NAD-binding protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Thebr_1173 Conserved carboxylase region K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Thebr_0932 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Thebr_2217 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Thebr_2216 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Thebr_1386 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Thebr_0015 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Thebr_0708 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Thebr_1867 homocitrate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tbo00630] D Thebr_0930 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Thebr_0928 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Thebr_0927 methylmalonyl-CoA mutase, large subunit K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D Thebr_0612 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D Thebr_0614 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D Thebr_1532 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1706 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_0539 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thebr_2038 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Thebr_2039 Glycine cleavage system P-protein-like protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Thebr_2036 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_2037 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Thebr_2018 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_2021 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_2110 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_2118 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thebr_1003 Arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:tbo00640] D Thebr_1324 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Thebr_1325 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0930 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Thebr_0928 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Thebr_0927 methylmalonyl-CoA mutase, large subunit K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D Thebr_2046 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thebr_1479 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:tbo00650] D Thebr_0471 butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D Thebr_0474 butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D Thebr_0480 Phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D Thebr_0472 phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thebr_0932 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Thebr_0317 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Thebr_0931 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Thebr_0316 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Thebr_1890 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_0298 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_1178 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_0477 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_1179 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0478 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0224 Alcohol dehydrogenase zinc-binding domain protein K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80] D Thebr_0020 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thebr_0013 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:tbo00660] D Thebr_0020 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thebr_0013 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thebr_0016 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Thebr_0017 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Thebr_0018 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism D Thebr_0755 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tbo00190] D Thebr_1495 NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Thebr_2303 ATP synthase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D Thebr_2302 H+transporting two-sector ATPase alpha/beta subunit central region K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D Thebr_2305 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D Thebr_2301 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D Thebr_2306 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D Thebr_2304 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D Thebr_2309 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D Thebr_2308 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D Thebr_2307 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D Thebr_0262 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Thebr_0461 HAD-superfamily hydrolase, subfamily IA, variant 1 K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tbo00710] D Thebr_0754 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thebr_0753 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thebr_2162 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thebr_0504 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thebr_0505 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thebr_2151 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thebr_0755 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thebr_1340 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thebr_0639 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Thebr_1386 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:tbo00720] D Thebr_1890 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_0298 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thebr_1386 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Thebr_2217 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Thebr_2216 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Thebr_1178 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_0477 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thebr_1179 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_0478 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thebr_1180 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Thebr_0479 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Thebr_1177 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Thebr_0476 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Thebr_1931 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thebr_0930 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Thebr_0927 methylmalonyl-CoA mutase, large subunit K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D Thebr_0928 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Thebr_0312 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Thebr_1125 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Thebr_1881 Formiminotransferase-cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Thebr_0716 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Thebr_1699 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Thebr_1325 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thebr_1324 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:tbo00680] D Thebr_1699 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Thebr_0539 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thebr_0757 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thebr_2162 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thebr_2040 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_0507 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Thebr_0667 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D Thebr_1324 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Thebr_1325 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thebr_0239 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Thebr_0756 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thebr_0151 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2123 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_1192 Phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D Thebr_0583 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:tbo00910] D Thebr_0492 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Thebr_1182 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Thebr_1532 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1706 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1773 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thebr_0222 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thebr_1792 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:tbo00920] D Thebr_1236 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Thebr_1964 sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A D Thebr_1963 sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B D Thebr_1962 sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C D Thebr_0362 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thebr_1034 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thebr_0287 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thebr_0515 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tbo00061] D Thebr_1315 acyl carrier protein K02078 acpP; acyl carrier protein D Thebr_1317 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thebr_1319 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Thebr_1314 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thebr_1316 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2237 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2134 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thebr_1318 enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D Thebr_0594 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:tbo00071] D Thebr_0594 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis [PATH:tbo00074] D Thebr_0496 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Thebr_1315 acyl carrier protein K02078 acpP; acyl carrier protein D Thebr_1317 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:tbo00561] D Thebr_0556 dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D Thebr_0557 dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D Thebr_0558 dihydroxyacetone kinase, phosphotransfer subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D Thebr_0551 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Thebr_1320 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Thebr_0862 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thebr_0729 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thebr_1197 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thebr_0482 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thebr_1394 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Thebr_0628 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:tbo00564] D Thebr_0863 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Thebr_0552 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Thebr_0862 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thebr_0729 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thebr_1197 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thebr_0482 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thebr_1394 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Thebr_0990 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Thebr_1248 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Thebr_1222 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Thebr_1577 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D Thebr_2044 FAD dependent oxidoreductase K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:tbo00600] D Thebr_0629 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thebr_2228 Beta-galactosidase trimerisation domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thebr_0628 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tbo00230] D Thebr_1143 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Thebr_1874 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_0168 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Thebr_1752 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Thebr_1748 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Thebr_1750 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Thebr_1753 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D Thebr_1755 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D Thebr_1754 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Thebr_1751 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Thebr_1849 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Thebr_1757 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Thebr_1848 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Thebr_1756 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Thebr_1212 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Thebr_1749 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thebr_1053 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Thebr_1176 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thebr_0764 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Thebr_2130 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Thebr_0309 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Thebr_1760 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Thebr_1583 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thebr_1723 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Thebr_1759 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Thebr_1353 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Thebr_0339 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thebr_0669 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Thebr_0759 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Thebr_1054 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Thebr_0266 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Thebr_2292 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Thebr_1985 5'-Nucleotidase domain-containing protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D Thebr_1216 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Thebr_0404 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Thebr_2208 Hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D Thebr_1792 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:tbo00240] D Thebr_0234 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thebr_0233 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thebr_1373 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Thebr_1372 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Thebr_1369 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Thebr_1370 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Thebr_1368 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Thebr_1371 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Thebr_1252 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Thebr_1583 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thebr_1489 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Thebr_0153 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Thebr_1196 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Thebr_0737 AAA ATPase K00876 udk; uridine kinase [EC:2.7.1.48] D Thebr_1176 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thebr_1985 5'-Nucleotidase domain-containing protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D Thebr_2150 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Thebr_1374 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Thebr_1216 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Thebr_2000 PfkB domain protein K16328 psuK; pseudouridine kinase [EC:2.7.1.83] D Thebr_1999 Indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D Thebr_1873 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D Thebr_1875 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Thebr_0669 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Thebr_0339 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thebr_2149 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Thebr_2197 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Thebr_1229 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thebr_2159 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tbo00250] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_1400 Asparaginase/glutaminase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Thebr_1458 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thebr_1819 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thebr_2145 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Thebr_0251 fumarate lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Thebr_0235 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thebr_0236 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thebr_2292 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Thebr_1212 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Thebr_1373 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Thebr_1773 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thebr_0222 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thebr_1182 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Thebr_1532 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1706 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_0234 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thebr_0233 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thebr_1754 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Thebr_0484 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thebr_1752 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:tbo00260] D Thebr_1227 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thebr_1537 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thebr_0146 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thebr_0513 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thebr_0148 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Thebr_0147 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Thebr_2056 aromatic amino acid beta-eliminating lyase/threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Thebr_0539 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thebr_0239 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Thebr_0756 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thebr_0151 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2123 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_1192 Phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D Thebr_0296 pyridoxal phosphate-dependent acyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Thebr_0297 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D Thebr_2038 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Thebr_2039 Glycine cleavage system P-protein-like protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Thebr_2036 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_2037 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Thebr_1006 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thebr_1005 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thebr_0919 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Thebr_0918 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:tbo00270] D Thebr_0362 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thebr_1034 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thebr_0287 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thebr_0717 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thebr_1835 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Thebr_1200 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Thebr_1171 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Thebr_2130 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Thebr_0900 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Thebr_0907 purine or other phosphorylase family 1 K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D Thebr_0904 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Thebr_0261 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] D Thebr_0909 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Thebr_0922 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Thebr_0774 GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Thebr_1227 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thebr_1537 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thebr_0146 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thebr_0513 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thebr_0148 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Thebr_0515 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Thebr_0514 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Thebr_1448 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_2046 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thebr_1006 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thebr_1005 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thebr_0151 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2123 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:tbo00280] D Thebr_1448 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thebr_0473 Glu/Leu/Phe/Val dehydrogenase dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0930 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Thebr_0928 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Thebr_0927 methylmalonyl-CoA mutase, large subunit K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tbo00290] D Thebr_0016 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Thebr_0017 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Thebr_0018 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Thebr_0020 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thebr_0013 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thebr_0014 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Thebr_0019 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Thebr_1448 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thebr_0473 Glu/Leu/Phe/Val dehydrogenase dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Thebr_0015 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Thebr_0708 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:tbo00300] D Thebr_0146 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thebr_0513 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thebr_1227 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thebr_1537 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thebr_1538 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thebr_1539 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Thebr_0232 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Thebr_0772 dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Thebr_1356 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Thebr_0574 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Thebr_0830 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thebr_0831 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:tbo00310] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0337 Acetylornithine transaminase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Thebr_1067 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26] C 00220 Arginine biosynthesis [PATH:tbo00220] D Thebr_1793 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Thebr_0235 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thebr_0236 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thebr_1794 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D Thebr_2192 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D Thebr_1754 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Thebr_1532 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1706 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_0234 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thebr_0233 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thebr_1792 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Thebr_1182 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_0230 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Thebr_0231 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Thebr_0229 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Thebr_0232 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:tbo00330] D Thebr_1860 Hydantoinase/oxoprolinase K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Thebr_1022 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Thebr_1172 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Thebr_1171 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Thebr_1200 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Thebr_0337 Acetylornithine transaminase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Thebr_0636 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Thebr_1207 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Thebr_1109 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Thebr_1110 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_1067 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26] C 00340 Histidine metabolism [PATH:tbo00340] D Thebr_0530 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Thebr_0529 histidyl-tRNA synthetase 2 K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Thebr_0537 phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Thebr_0535 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Thebr_0534 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Thebr_0536 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Thebr_0533 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Thebr_0532 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thebr_0152 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D Thebr_0531 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Thebr_1523 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Thebr_1885 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Thebr_1883 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Thebr_1884 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] C 00350 Tyrosine metabolism [PATH:tbo00350] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_0532 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thebr_1650 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1] C 00360 Phenylalanine metabolism [PATH:tbo00360] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_0532 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thebr_1650 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1] D Thebr_0636 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:tbo00380] D Thebr_1003 Arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0636 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tbo00400] D Thebr_1010 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Thebr_0920 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Thebr_1008 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Thebr_1111 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Thebr_1093 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Thebr_1107 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Thebr_1012 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Thebr_0789 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Thebr_0913 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thebr_0914 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Thebr_0915 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Thebr_0917 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Thebr_0916 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Thebr_0919 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Thebr_0918 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Thebr_1195 chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5] D Thebr_0145 hypothetical protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D Thebr_1011 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Thebr_1009 Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_0532 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tbo00410] D Thebr_1857 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Thebr_1856 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism [PATH:tbo00430] D Thebr_2145 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Thebr_1182 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Thebr_1325 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thebr_1324 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tbo00450] D Thebr_0717 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thebr_0909 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Thebr_0922 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Thebr_1959 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Thebr_0125 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Thebr_0458 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Thebr_2202 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Thebr_2184 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tbo00460] D Thebr_1974 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thebr_2098 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thebr_1400 Asparaginase/glutaminase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Thebr_0539 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tbo00470] D Thebr_0499 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thebr_0193 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_2222 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_1754 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Thebr_1746 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Thebr_1364 Asp/Glu/hydantoin racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Thebr_0833 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thebr_1356 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Thebr_0574 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Thebr_1067 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26] D Thebr_1073 alanine racemase domain protein K21898 orr; ornithine racemase [EC:5.1.1.12] D Thebr_1071 cobalamin B12-binding domain protein K17898 oraE; D-ornithine 4,5-aminomutase subunit beta [EC:5.4.3.5] D Thebr_1070 hypothetical protein K17899 oraS; D-ornithine 4,5-aminomutase subunit alpha [EC:5.4.3.5] C 00480 Glutathione metabolism [PATH:tbo00480] D Thebr_1186 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Thebr_1931 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thebr_2108 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thebr_0615 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thebr_1001 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thebr_1002 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thebr_1171 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:tbo00511] D Thebr_0629 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thebr_2228 Beta-galactosidase trimerisation domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thebr_0630 glycosyl hydrolase 38 domain protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D Thebr_1975 glycoside hydrolase family 2 sugar binding protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:tbo00542] D Thebr_1140 hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tbo00541] D Thebr_1592 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thebr_0622 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thebr_1669 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Thebr_1670 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Thebr_1667 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Thebr_1668 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Thebr_0765 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Thebr_1665 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thebr_0167 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:tbo00550] D Thebr_0110 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_0836 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_2146 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_0682 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thebr_0164 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Thebr_0833 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thebr_0830 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thebr_0193 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_2222 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_0831 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Thebr_1249 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thebr_0993 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thebr_0219 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thebr_0832 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thebr_0835 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Thebr_2026 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thebr_1484 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thebr_1090 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thebr_0641 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thebr_0829 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thebr_0588 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A D Thebr_1147 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1166 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1457 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_0008 domain of unknown function DUF1727 K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D Thebr_0007 CobB/CobQ domain protein glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:tbo00552] D Thebr_0993 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thebr_0219 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thebr_1140 hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thebr_1588 cell envelope-related function transcriptional attenuator, LytR/CpsA family K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium D Thebr_1140 hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00543 Exopolysaccharide biosynthesis [PATH:tbo00543] D Thebr_1140 hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thebr_0362 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tbo00730] D Thebr_0511 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Thebr_1696 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Thebr_0288 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_0819 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_0820 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Thebr_1743 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Thebr_1130 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Thebr_1694 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Thebr_1695 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Thebr_1341 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Thebr_1339 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D Thebr_0404 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tbo00740] D Thebr_0023 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Thebr_0021 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Thebr_0024 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Thebr_0022 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Thebr_1234 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Thebr_1694 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Thebr_1143 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:tbo00750] D Thebr_0147 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Thebr_1596 pyridoxine biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Thebr_1595 SNO glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:tbo00760] D Thebr_1506 Quinolinate phosphoribosyl transferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Thebr_0764 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Thebr_1176 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thebr_1985 5'-Nucleotidase domain-containing protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D Thebr_1464 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Thebr_1686 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Thebr_0779 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Thebr_1132 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:tbo00770] D Thebr_0020 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thebr_0013 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thebr_0014 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Thebr_0019 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Thebr_1855 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Thebr_1856 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Thebr_0319 transcriptional activator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Thebr_1351 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Thebr_1329 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Thebr_1508 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Thebr_0496 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Thebr_1448 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thebr_1857 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:tbo00780] D Thebr_1314 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thebr_1316 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2237 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2134 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thebr_0661 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D Thebr_0590 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:tbo00785] D Thebr_0808 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Thebr_0809 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Thebr_2035 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0815 catalytic domain-containing protein of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Thebr_2038 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Thebr_2039 Glycine cleavage system P-protein-like protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Thebr_2036 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thebr_2037 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tbo00790] D Thebr_0329 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Thebr_0331 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Thebr_0330 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Thebr_1564 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Thebr_0023 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Thebr_0332 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Thebr_1473 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Thebr_0659 beta-lactamase domain-containing protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Thebr_0884 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Thebr_0885 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Thebr_0882 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Thebr_0883 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] C 00670 One carbon pool by folate [PATH:tbo00670] D Thebr_0312 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Thebr_1125 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Thebr_1881 Formiminotransferase-cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Thebr_0539 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thebr_1750 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Thebr_1749 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thebr_1884 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D Thebr_1348 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Thebr_2036 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thebr_0717 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thebr_0716 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tbo00860] D Thebr_1454 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thebr_1937 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Thebr_1938 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Thebr_1936 glutamate-1-semialdehyde-2,1-aminomutase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Thebr_0426 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase D Thebr_1949 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Thebr_1541 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Thebr_1948 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Thebr_1947 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Thebr_1943 Adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Thebr_1942 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Thebr_1944 L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D Thebr_0440 Ferritin Dps family protein K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tbo00900] D Thebr_1130 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Thebr_1247 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Thebr_0356 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Thebr_0182 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Thebr_0358 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Thebr_1245 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Thebr_1198 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Thebr_1128 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Thebr_1249 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis D Thebr_0728 glycosyl transferase family 2 K10211 crtQ; 4,4'-diaponeurosporenoate glycosyltransferase [EC:2.4.1.-] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Thebr_0504 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thebr_0505 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:tbo00523] D Thebr_1669 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Thebr_1670 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Thebr_1667 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Thebr_1668 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D Thebr_1670 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:tbo00946] D Thebr_1974 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thebr_2098 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Thebr_0489 Peptidoglycan-binding domain 1 protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:tbo00332] D Thebr_1109 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Thebr_1110 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:tbo00261] D Thebr_1227 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thebr_1537 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thebr_1538 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thebr_1539 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tbo00521] D Thebr_0593 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_2201 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_1593 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thebr_1669 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Thebr_1670 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Thebr_1667 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Thebr_1668 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Thebr_0593 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] D Thebr_2201 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:tbo00525] D Thebr_1669 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Thebr_1670 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:tbo00401] D Thebr_1011 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_0532 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Thebr_0913 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thebr_0914 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Thebr_1317 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thebr_1316 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2237 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Thebr_1315 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:tbo00999] D Thebr_1835 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Thebr_1093 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Thebr_1974 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thebr_2098 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites D Thebr_1073 alanine racemase domain protein K21898 orr; ornithine racemase [EC:5.1.1.12] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D Thebr_0932 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Thebr_0317 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Thebr_0931 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Thebr_0316 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta C 00627 Aminobenzoate degradation [PATH:tbo00627] D Thebr_0636 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Thebr_0750 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:tbo00625] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation D Thebr_1699 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:tbo00643] D Thebr_0636 Acetamidase/Formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:tbo00626] D Thebr_0212 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tbo03020] D Thebr_0376 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thebr_0377 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thebr_0412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thebr_1352 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tbo03010] D Thebr_1254 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Thebr_0390 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Thebr_0411 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Thebr_0401 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Thebr_2320 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Thebr_0380 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Thebr_0398 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Thebr_0419 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Thebr_0383 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Thebr_0410 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Thebr_0379 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Thebr_0409 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Thebr_0397 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Thebr_1233 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Thebr_1305 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Thebr_0393 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Thebr_2318 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Thebr_0388 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Thebr_1439 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Thebr_1402 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Thebr_0373 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Thebr_0387 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Thebr_0384 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Thebr_0385 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Thebr_0396 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Thebr_0399 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Thebr_0375 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Thebr_2314 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Thebr_0374 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Thebr_0372 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Thebr_0418 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Thebr_0394 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Thebr_0402 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Thebr_0391 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Thebr_0413 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Thebr_0400 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Thebr_1301 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Thebr_0792 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Thebr_1470 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Thebr_0389 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Thebr_0386 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Thebr_0395 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Thebr_0573 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Thebr_1468 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Thebr_1337 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Thebr_0392 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Thebr_2160 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Thebr_1322 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Thebr_0369 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Thebr_2340 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Thebr_0791 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Thebr_0408 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Thebr_0378 ribosomal protein L7Ae/L30e/S12e/Gadd45 K07590 RP-L7A; large subunit ribosomal protein L7A D Thebr_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0063 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0068 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0039 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0062 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0067 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0038 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0066 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0061 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tbo00970] D Thebr_R0010 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thebr_R0033 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thebr_R0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thebr_R0057 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0049 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0023 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thebr_R0013 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thebr_R0065 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thebr_R0016 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thebr_R0029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thebr_R0032 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Thebr_R0053 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thebr_R0043 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thebr_R0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thebr_R0007 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thebr_R0044 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thebr_R0031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0056 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0064 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0054 tRNA-His K14226 tRNA-His; tRNA His D Thebr_R0011 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thebr_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0004 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0047 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0048 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thebr_R0020 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thebr_R0052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thebr_R0005 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0015 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0006 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0017 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thebr_R0030 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thebr_R0034 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thebr_R0060 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thebr_R0046 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thebr_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0071 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thebr_R0018 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thebr_R0072 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thebr_R0035 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Thebr_R0058 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thebr_R0019 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thebr_R0059 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0028 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0027 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_1454 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thebr_0361 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Thebr_1733 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Thebr_1732 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Thebr_1734 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Thebr_1079 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thebr_1063 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thebr_1389 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thebr_0787 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thebr_0029 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thebr_0363 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thebr_2184 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thebr_1348 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Thebr_1566 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thebr_2003 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thebr_0899 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thebr_0328 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thebr_0195 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thebr_0359 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thebr_1062 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thebr_0794 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thebr_0795 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thebr_0115 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thebr_1297 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tbo03060] D Thebr_0403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thebr_0370 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thebr_0758 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thebr_1049 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Thebr_1050 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Thebr_1044 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thebr_2337 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thebr_1800 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thebr_1306 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thebr_R0069 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Thebr_1308 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thebr_0028 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thebr_1377 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tbo04122] D Thebr_0288 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_0819 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_1076 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thebr_0289 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thebr_0884 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Thebr_0874 thiamineS protein K03636 moaD; sulfur-carrier protein D Thebr_0875 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Thebr_0885 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Thebr_0820 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:tbo03018] D Thebr_0757 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thebr_1232 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thebr_1384 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thebr_0949 DEAD/DEAH box helicase domain protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Thebr_2161 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Thebr_1217 YmdA/YtgF protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Thebr_1084 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_1428 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thebr_1761 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thebr_1206 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thebr_2185 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tbo03030] D Thebr_0699 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thebr_1243 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thebr_2246 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thebr_2194 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thebr_1440 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thebr_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thebr_2313 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Thebr_0760 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Thebr_2319 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thebr_1208 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Thebr_1295 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Thebr_1735 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tbo03410] D Thebr_1771 8-oxoguanine DNA glycosylase domain-containing protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D Thebr_0746 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Thebr_2200 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Thebr_2215 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Thebr_1108 Xylose isomerase domain-containing protein TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Thebr_1052 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thebr_1735 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tbo03420] D Thebr_0175 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Thebr_0585 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Thebr_0584 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Thebr_0589 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Thebr_1736 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thebr_1735 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:tbo03430] D Thebr_1203 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Thebr_0798 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Thebr_1204 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Thebr_1736 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thebr_1126 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Thebr_1127 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Thebr_1052 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thebr_2319 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thebr_0699 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thebr_1243 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thebr_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thebr_2246 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thebr_1440 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thebr_2194 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thebr_1735 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thebr_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:tbo03440] D Thebr_1052 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thebr_2319 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thebr_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Thebr_1391 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Thebr_2244 recombination protein RecR K06187 recR; recombination protein RecR D Thebr_1220 recA protein K03553 recA; recombination protein RecA D Thebr_1039 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Thebr_1040 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Thebr_1038 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Thebr_1334 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thebr_1834 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thebr_0699 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thebr_1243 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thebr_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thebr_2246 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thebr_1440 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thebr_2194 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thebr_1350 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:tbo03450] D Thebr_0488 Ku protein K10979 ku; DNA end-binding protein Ku D Thebr_0487 DNA polymerase LigD, ligase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tbo02010] D Thebr_0878 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Thebr_0879 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Thebr_0880 ABC transporter related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Thebr_0576 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Thebr_0687 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D Thebr_0688 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thebr_0689 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thebr_0625 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Thebr_0626 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Thebr_0627 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Thebr_1549 extracellular solute-binding protein family 1 K17311 treS; trehalose transport system substrate-binding protein D Thebr_1551 binding-protein-dependent transport systems inner membrane component K17312 treT; trehalose transport system permease protein D Thebr_1550 binding-protein-dependent transport systems inner membrane component K17313 treU; trehalose transport system permease protein D Thebr_2102 extracellular solute-binding protein family 1 K10240 cebE; cellobiose transport system substrate-binding protein D Thebr_2101 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein D Thebr_2100 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein D Thebr_1880 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Thebr_1878 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Thebr_1877 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Thebr_1879 ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Thebr_2083 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D Thebr_2084 inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Thebr_2085 ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Thebr_2086 RbsD or FucU transport K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D Thebr_0849 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Thebr_0850 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Thebr_0851 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Thebr_0852 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Thebr_1810 extracellular solute-binding protein family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Thebr_1809 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Thebr_1808 ABC transporter related protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Thebr_1363 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Thebr_1362 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Thebr_1361 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Thebr_1730 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Thebr_1729 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Thebr_1728 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Thebr_1727 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Thebr_1726 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Thebr_1971 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Thebr_1973 ABC-3 protein K09816 znuB; zinc transport system permease protein D Thebr_1972 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Thebr_2070 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Thebr_1934 cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D Thebr_2069 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Thebr_1935 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D Thebr_1933 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Thebr_2071 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Thebr_1932 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Thebr_2072 ABC transporter related protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Thebr_1568 BioY protein K03523 bioY; biotin transport system substrate-specific component D Thebr_0906 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Thebr_0416 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Thebr_0414 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thebr_0415 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thebr_0579 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Thebr_0578 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Thebr_1534 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_1535 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_0216 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_0217 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_1418 ABC transporter related protein K18231 msr; macrolide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:tbo02060] D Thebr_0345 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Thebr_0697 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D Thebr_1869 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thebr_1870 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D Thebr_1987 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D Thebr_1989 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D Thebr_1738 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thebr_1992 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thebr_1740 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thebr_1993 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thebr_1739 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Thebr_1995 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Thebr_2115 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thebr_2113 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Thebr_2112 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203] D Thebr_2114 phosphotransferase system PTS sorbose-specific IIC subunit K17466 dgaC; D-glucosaminate PTS system EIIC component D Thebr_2126 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D Thebr_2125 phosphotransferase system lactose/cellobiose-specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D Thebr_2029 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D Thebr_2030 PTS system ascorbate-specific transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D Thebr_0159 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thebr_0342 PTS system, fructose subfamily, IIA subunit K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D Thebr_0157 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Thebr_0158 PTS system, fructose subfamily, IIA subunit K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tbo03070] D Thebr_1049 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Thebr_1050 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Thebr_0370 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thebr_0758 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thebr_0403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thebr_1044 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thebr_2337 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thebr_1800 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thebr_1308 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thebr_1306 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thebr_0055 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:tbo02020] D Thebr_0848 PAS sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Thebr_0847 response regulator receiver K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Thebr_0849 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Thebr_0172 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Thebr_1824 flagellin domain protein K02406 fliC; flagellin D Thebr_1257 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Thebr_1783 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Thebr_0509 Osmosensitive K channel His kinase sensor K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Thebr_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Thebr_0311 PAS sensor protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Thebr_2163 response regulator receiver K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Thebr_1136 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Thebr_0347 malic protein NAD-binding protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Thebr_1777 Accessory gene regulator B K07813 agrB; accessory gene regulator B D Thebr_1825 carbon storage regulator K03563 csrA; carbon storage regulator D Thebr_0801 Sensor DegS domain protein K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Thebr_0068 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thebr_2265 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thebr_0069 Type II secretion system F domain protein K12510 tadB; tight adherence protein B D Thebr_2264 Type II secretion system F domain protein K12510 tadB; tight adherence protein B D Thebr_1704 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Thebr_1532 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1706 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_0751 RNA polymerase sigma-54 factor, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Thebr_1097 Tfp pilus assembly protein PilE-like protein K02650 pilA; type IV pilus assembly protein PilA D Thebr_1201 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Thebr_1407 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1813 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1872 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1886 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_2294 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1036 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Thebr_1260 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Thebr_1261 P2 response regulator binding domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thebr_1272 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thebr_1262 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Thebr_2312 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thebr_0983 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thebr_1831 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tbo02024] D Thebr_1206 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thebr_0913 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thebr_0914 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Thebr_0594 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thebr_2312 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thebr_0983 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thebr_0021 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Thebr_1777 Accessory gene regulator B K07813 agrB; accessory gene regulator B D Thebr_1730 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Thebr_1729 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Thebr_1728 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Thebr_1727 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Thebr_1726 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Thebr_1980 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_1505 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_0208 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_2234 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_1979 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thebr_0207 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thebr_2233 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thebr_1978 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thebr_2232 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thebr_0205 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thebr_1977 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thebr_2231 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thebr_2230 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thebr_0204 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thebr_1976 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thebr_2337 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thebr_0370 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thebr_0758 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thebr_0403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thebr_1044 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thebr_1800 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thebr_1308 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thebr_1306 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thebr_2163 response regulator receiver K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Thebr_1136 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Thebr_0420 helix-turn-helix domain protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D Thebr_0254 helix-turn-helix domain protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tbo02030] D Thebr_1407 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1813 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1872 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1886 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_2294 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_2083 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D Thebr_1261 P2 response regulator binding domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thebr_1036 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Thebr_1260 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Thebr_1272 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thebr_1259 CheC domain protein K03410 cheC; chemotaxis protein CheC D Thebr_1262 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Thebr_1258 CheD family protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Thebr_1201 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Thebr_1285 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Thebr_1274 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Thebr_1273 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thebr_1783 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Thebr_1782 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tbo02040] D Thebr_1287 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Thebr_1286 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Thebr_1285 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Thebr_1284 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH D Thebr_1283 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Thebr_1282 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Thebr_1280 Flagellar hook-length control protein-like, C-terminal domain protein K02414 fliK; flagellar hook-length control protein FliK D Thebr_1275 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Thebr_1274 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Thebr_1273 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thebr_1271 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D Thebr_1270 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Thebr_1269 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Thebr_1268 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Thebr_1266 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Thebr_1267 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Thebr_1289 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Thebr_1288 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Thebr_1279 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Thebr_1277 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE D Thebr_2139 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Thebr_2138 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Thebr_2137 Flagellar protein FlgJ-like protein K02395 flgJ; peptidoglycan hydrolase FlgJ D Thebr_1829 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Thebr_1828 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Thebr_1824 flagellin domain protein K02406 fliC; flagellin D Thebr_1816 flagellar hook-associated 2 domain-containing protein K02407 fliD; flagellar hook-associated protein 2 D Thebr_1815 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Thebr_1783 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Thebr_1782 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Thebr_1831 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Thebr_0761 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D Thebr_0751 RNA polymerase sigma-54 factor, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Thebr_1257 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Thebr_0757 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:tbo04980] D Thebr_0929 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-] D Thebr_0717 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tbo01501] D Thebr_1730 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Thebr_1729 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Thebr_1728 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Thebr_1727 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Thebr_1726 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Thebr_0489 Peptidoglycan-binding domain 1 protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Thebr_2026 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thebr_1484 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thebr_1090 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tbo01502] D Thebr_0193 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_2222 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_0499 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thebr_0831 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Thebr_0832 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thebr_0835 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tbo01503] D Thebr_0460 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thebr_0293 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thebr_0172 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tbo01000] C 01001 Protein kinases [BR:tbo01001] D Thebr_1342 Serine/threonine-protein kinase-like domain protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Thebr_1499 ATP-binding region ATPase domain protein K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D Thebr_1590 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Thebr_0848 PAS sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Thebr_0509 Osmosensitive K channel His kinase sensor K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Thebr_0801 Sensor DegS domain protein K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Thebr_0311 PAS sensor protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Thebr_1261 P2 response regulator binding domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tbo01009] D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_1343 Protein phosphatase 2C-like protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:tbo01002] D Thebr_1377 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Thebr_1098 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thebr_1437 spore protease K06012 gpr; spore protease [EC:3.4.24.78] D Thebr_0842 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D Thebr_0982 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D Thebr_1759 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Thebr_1752 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Thebr_0484 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thebr_1458 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thebr_1819 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thebr_0984 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Thebr_1777 Accessory gene regulator B K07813 agrB; accessory gene regulator B D Thebr_0162 Abortive infection protein K07052 K07052; CAAX protease family protein D Thebr_1007 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D Thebr_0540 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Thebr_0772 dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Thebr_0711 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Thebr_1478 Peptidase M23 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Thebr_0405 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Thebr_1112 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Thebr_1530 isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D Thebr_0310 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thebr_0565 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thebr_2172 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thebr_1615 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Thebr_1477 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D Thebr_1246 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Thebr_0172 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Thebr_0149 peptidase S8 and S53 subtilisin kexin sedolisin K01361 E3.4.21.96; lactocepin [EC:3.4.21.96] D Thebr_1768 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-] D Thebr_1147 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1166 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1457 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1691 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Thebr_1689 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Thebr_0028 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thebr_0581 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Thebr_0138 peptidase S51 dipeptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21] D Thebr_2325 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D Thebr_1928 Rhomboid family protein K07059 K07059; rhomboid family protein D Thebr_1135 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D Thebr_1292 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Thebr_0797 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Thebr_1089 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:tbo01003] D Thebr_2050 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D Thebr_2026 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thebr_1140 hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thebr_0518 glycosyltransferase 36 K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tbo01005] D Thebr_1140 hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tbo01011] D Thebr_0110 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_0836 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_2146 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thebr_0682 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thebr_0164 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Thebr_0833 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thebr_0830 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thebr_0193 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_2222 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thebr_0499 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thebr_1746 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Thebr_1364 Asp/Glu/hydantoin racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Thebr_0832 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thebr_0835 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Thebr_0993 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thebr_0219 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thebr_2133 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thebr_2026 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thebr_1484 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thebr_1090 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thebr_0641 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thebr_0829 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thebr_0588 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A D Thebr_1147 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1166 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1457 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thebr_1478 Peptidase M23 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Thebr_1507 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thebr_1087 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Thebr_0190 spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thebr_1014 cell wall hydrolase SleB K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thebr_0258 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Thebr_2143 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Thebr_0460 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thebr_0293 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tbo01004] D Thebr_1317 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thebr_1319 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Thebr_1314 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thebr_1316 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2237 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thebr_2134 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thebr_1318 enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D Thebr_0594 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thebr_1320 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Thebr_0862 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thebr_0729 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thebr_1197 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thebr_0482 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tbo01006] D Thebr_1128 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Thebr_1249 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thebr_1205 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:tbo01007] D Thebr_1454 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thebr_0361 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Thebr_0115 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thebr_1297 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Thebr_0363 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thebr_0195 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thebr_2184 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thebr_0899 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thebr_1566 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thebr_2003 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thebr_0328 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thebr_1063 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thebr_1062 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thebr_1389 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thebr_0029 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thebr_0359 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thebr_0787 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thebr_1079 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thebr_0794 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thebr_0795 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thebr_1213 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thebr_2032 aminotransferase class I and II K10907 K10907; aminotransferase [EC:2.6.1.-] D Thebr_2076 aminotransferase class I and II K10907 K10907; aminotransferase [EC:2.6.1.-] D Thebr_0532 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thebr_0296 pyridoxal phosphate-dependent acyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Thebr_0232 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Thebr_0337 Acetylornithine transaminase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Thebr_1448 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tbo03000] D Thebr_0635 Cupin 2 conserved barrel domain protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D Thebr_1965 LysR substrate-binding protein K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D Thebr_2206 LysR substrate-binding protein K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D Thebr_0156 regulatory protein DeoR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Thebr_2141 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D Thebr_1388 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D Thebr_1552 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thebr_1558 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thebr_1842 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thebr_1981 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thebr_2088 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thebr_2235 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thebr_0605 periplasmic binding protein/LacI transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Thebr_1876 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator D Thebr_0902 UbiC transcription regulator-associated domain-containing protein K03710 K03710; GntR family transcriptional regulator D Thebr_1631 regulatory protein MerR K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D Thebr_1083 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Thebr_1970 ferric-uptake regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D Thebr_0748 ferric-uptake regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D Thebr_2054 ferric-uptake regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D Thebr_2022 Transcriptional regulator IclR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D Thebr_2312 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thebr_0983 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thebr_1075 transcriptional regulator, Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D Thebr_0285 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Thebr_0590 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Thebr_0420 helix-turn-helix domain protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D Thebr_0254 helix-turn-helix domain protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D Thebr_0165 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D Thebr_2116 sigma-54 factor interaction domain-containing protein K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator D Thebr_0810 PAS sensor protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Thebr_0577 helix-turn-helix Fis-type K02647 cdaR; carbohydrate diacid regulator D Thebr_0867 sugar diacid recognition domain protein K02647 cdaR; carbohydrate diacid regulator D Thebr_1781 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor D Thebr_1290 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D Thebr_0034 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator D Thebr_2286 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator D Thebr_2068 NikR nickel binding protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D Thebr_0500 putative transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D Thebr_1868 CAT RNA-binding domain protein K03480 glcT; transcriptional antiterminator D Thebr_1742 Protein-N(pi)-phosphohistidine--sugar phosphotransferase K03483 mtlR; mannitol operon transcriptional activator D Thebr_1988 Protein-N(pi)-phosphohistidine--sugar phosphotransferase K03483 mtlR; mannitol operon transcriptional activator D Thebr_2031 Protein-N(pi)-phosphohistidine--sugar phosphotransferase K03483 mtlR; mannitol operon transcriptional activator D Thebr_1065 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Thebr_0818 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Thebr_2188 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Thebr_0177 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D Thebr_2329 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thebr_2331 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thebr_0549 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D Thebr_1133 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D Thebr_0267 ROK family protein K02565 nagC; N-acetylglucosamine repressor D Thebr_1430 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Thebr_0349 Firmicute transcriptional repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response D Thebr_0752 sugar-binding domain-containing protein K05311 cggR; central glycolytic genes regulator D Thebr_1374 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Thebr_0846 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Thebr_1657 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Thebr_0826 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tbo03021] D Thebr_0559 beta-lactamase domain-containing protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] D Thebr_0412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thebr_0376 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thebr_0377 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thebr_1352 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Thebr_0761 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D Thebr_0935 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Thebr_1150 RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thebr_1091 RNA polymerase sigma-K factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thebr_0843 RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thebr_0844 RNA polymerase sigma-G factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thebr_0367 RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor D Thebr_2176 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor D Thebr_0751 RNA polymerase sigma-54 factor, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Thebr_1257 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Thebr_1241 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Thebr_1124 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Thebr_1594 NGN domain-containing protein K02601 nusG; transcription termination/antitermination protein NusG D Thebr_0371 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Thebr_1499 ATP-binding region ATPase domain protein K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D Thebr_1607 Positive regulator of sigma(E) RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Thebr_1628 Positive regulator of sigma(E) RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Thebr_0327 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Thebr_2161 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tbo03019] D Thebr_0559 beta-lactamase domain-containing protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] D Thebr_1474 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Thebr_1313 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thebr_1084 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Thebr_1217 YmdA/YtgF protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Thebr_1384 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thebr_0949 DEAD/DEAH box helicase domain protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Thebr_0757 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thebr_1232 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thebr_2161 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Thebr_0701 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thebr_1428 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thebr_1761 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thebr_1206 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thebr_2185 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Thebr_1825 carbon storage regulator K03563 csrA; carbon storage regulator D Thebr_0684 hypothetical protein K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:tbo03011] D Thebr_1254 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Thebr_0390 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Thebr_0411 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Thebr_0401 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Thebr_2320 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Thebr_0380 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Thebr_0398 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Thebr_0419 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Thebr_0383 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Thebr_0410 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Thebr_0379 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Thebr_0409 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Thebr_0397 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Thebr_1233 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Thebr_1305 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Thebr_0393 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Thebr_2318 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Thebr_0388 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Thebr_1439 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Thebr_1402 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Thebr_0373 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Thebr_0387 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Thebr_0384 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Thebr_0385 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Thebr_0396 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Thebr_0399 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Thebr_2314 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Thebr_0374 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Thebr_0372 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Thebr_0375 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Thebr_0418 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Thebr_0394 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Thebr_0402 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Thebr_0391 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Thebr_0413 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Thebr_0400 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Thebr_1301 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Thebr_0792 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Thebr_1470 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Thebr_0389 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Thebr_0386 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Thebr_0395 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Thebr_1468 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Thebr_1337 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Thebr_0392 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Thebr_2160 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Thebr_1322 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Thebr_0369 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Thebr_2340 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Thebr_0791 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Thebr_0408 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Thebr_0573 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Thebr_0378 ribosomal protein L7Ae/L30e/S12e/Gadd45 K07590 RP-L7A; large subunit ribosomal protein L7A D Thebr_R0038 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0066 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0061 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0063 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0068 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0039 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0062 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0067 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tbo03009] D Thebr_1313 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thebr_1393 GTP-binding protein Era K03595 era; GTPase D Thebr_1466 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Thebr_1241 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Thebr_1124 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Thebr_1594 NGN domain-containing protein K02601 nusG; transcription termination/antitermination protein NusG D Thebr_0371 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Thebr_2236 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Thebr_2181 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Thebr_1345 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Thebr_1330 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Thebr_1425 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Thebr_2333 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Thebr_0827 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Thebr_2190 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Thebr_1131 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Thebr_0365 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Thebr_0113 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Thebr_0114 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Thebr_1366 Conserved hypothetical protein CHP00095 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Thebr_1344 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Thebr_0704 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Thebr_1169 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Thebr_1376 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Thebr_0735 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Thebr_1788 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Thebr_1170 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Thebr_1303 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Thebr_1223 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Thebr_1426 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Thebr_1474 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Thebr_1081 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Thebr_0364 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D Thebr_1341 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Thebr_0861 ribosome-associated GTPase EngA K03977 engA; GTPase D Thebr_1300 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A D Thebr_1027 GTP-binding proten HflX K03665 hflX; GTPase D Thebr_2153 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Thebr_1054 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Thebr_1237 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Thebr_1242 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Thebr_0003 S4 domain protein YaaA K14761 rlbA; ribosome-associated protein D Thebr_1462 iojap-like protein K09710 ybeB; ribosome-associated protein D Thebr_1395 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Thebr_1807 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D Thebr_0822 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Thebr_1323 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:tbo03016] D Thebr_1627 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D Thebr_1454 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thebr_0359 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thebr_0899 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thebr_2003 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thebr_2184 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thebr_0195 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thebr_0328 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thebr_1063 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thebr_1079 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thebr_1389 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thebr_0787 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thebr_0029 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thebr_0363 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thebr_1566 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thebr_1062 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thebr_0794 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thebr_0795 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thebr_0115 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thebr_1297 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Thebr_1055 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Thebr_1403 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Thebr_1853 tRNA (adenine-N(1)-)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D Thebr_0417 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Thebr_1235 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Thebr_0288 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_0819 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_2153 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Thebr_1205 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Thebr_2335 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Thebr_2334 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Thebr_2339 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Thebr_R0025 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Thebr_1724 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Thebr_1360 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Thebr_0361 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Thebr_2248 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Thebr_1984 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Thebr_1202 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Thebr_1404 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Thebr_1302 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Thebr_0762 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Thebr_2067 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Thebr_0793 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family D Thebr_1076 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thebr_0289 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thebr_2218 PP-loop domain-containing protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D Thebr_1365 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Thebr_1042 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Thebr_0332 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Thebr_1473 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Thebr_0745 domain of unknown function DUF1730 K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Thebr_1559 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Thebr_1043 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Thebr_0820 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Thebr_0308 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Thebr_1789 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Thebr_1787 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Thebr_1790 Uncharacterized protein family UPF0079, ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Thebr_1064 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Thebr_1326 protein of unknown function DUF795 K27343 tmcAL; tRNAmet cytidine acetate ligase [EC:6.3.1.22] D Thebr_1384 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thebr_1232 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tbo03012] D Thebr_1238 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Thebr_0790 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Thebr_1253 translation elongation factor Ts K02357 tsf; elongation factor Ts D Thebr_0368 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thebr_0382 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thebr_0346 translation elongation factor G K02355 fusA; elongation factor G D Thebr_0381 translation elongation factor G K02355 fusA; elongation factor G D Thebr_2156 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Thebr_1251 ribosome recycling factor K02838 frr; ribosome recycling factor D Thebr_2157 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Thebr_0173 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Thebr_0407 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Thebr_1113 translation elongation factor P K02356 efp; elongation factor P D Thebr_1799 Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:tbo03110] D Thebr_0352 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Thebr_1690 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Thebr_1291 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Thebr_1428 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thebr_1761 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thebr_1427 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Thebr_0781 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Thebr_1429 GrpE protein K03687 GRPE; molecular chaperone GrpE D Thebr_0161 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Thebr_1762 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Thebr_0121 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Thebr_0172 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Thebr_0310 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thebr_0565 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thebr_2172 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thebr_0149 peptidase S8 and S53 subtilisin kexin sedolisin K01361 E3.4.21.96; lactocepin [EC:3.4.21.96] D Thebr_0176 PpiC-type peptidyl-prolyl cis-trans isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D Thebr_1066 thioredoxin K03671 TXN; thioredoxin D Thebr_1021 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tbo04131] D Thebr_1583 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thebr_1015 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Thebr_0630 glycosyl hydrolase 38 domain protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D Thebr_0753 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thebr_0239 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Thebr_0702 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:tbo03032] D Thebr_1208 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Thebr_0256 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thebr_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Thebr_2313 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Thebr_0106 AAA ATPase K02315 dnaC; DNA replication protein DnaC D Thebr_0760 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Thebr_2319 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thebr_0699 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thebr_1243 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thebr_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thebr_1440 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thebr_2194 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thebr_2246 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thebr_1295 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Thebr_1735 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thebr_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Thebr_0011 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Thebr_0010 DNA topoisomerase IV, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Thebr_1293 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tbo03036] D Thebr_1313 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thebr_0256 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thebr_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Thebr_1206 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thebr_1309 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Thebr_1157 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D Thebr_1158 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D Thebr_0840 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Thebr_0264 Septum formation initiator K13052 divIC; cell division protein DivIC D Thebr_0578 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Thebr_1224 cell division protein FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Thebr_0828 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Thebr_0837 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ D Thebr_0834 stage V sporulation protein E K03588 ftsW; cell division protein FtsW D Thebr_0579 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Thebr_0841 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thebr_0796 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA D Thebr_0460 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thebr_0293 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thebr_1483 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Thebr_1482 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Thebr_0067 chromosome partitioning ATPase K03609 minD; septum site-determining protein MinD D Thebr_2266 chromosome partitioning ATPase K03609 minD; septum site-determining protein MinD D Thebr_1481 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Thebr_0897 DivIVA domain protein K04074 divIVA; cell division initiation protein D Thebr_0894 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF D Thebr_1487 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thebr_2140 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thebr_1486 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Thebr_1485 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Thebr_1480 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Thebr_2330 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Thebr_2329 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thebr_2331 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thebr_2334 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Thebr_2333 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Thebr_1146 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Thebr_0255 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D Thebr_2175 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Thebr_1688 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein D Thebr_0696 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:tbo03400] D Thebr_0213 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Thebr_1771 8-oxoguanine DNA glycosylase domain-containing protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D Thebr_0746 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Thebr_2332 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Thebr_1229 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thebr_2215 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Thebr_2200 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Thebr_1108 Xylose isomerase domain-containing protein TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Thebr_1052 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thebr_1735 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thebr_0585 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Thebr_0584 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Thebr_0589 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Thebr_1736 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thebr_0376 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thebr_0377 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thebr_0412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thebr_1352 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Thebr_0175 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Thebr_1203 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Thebr_0798 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Thebr_1204 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Thebr_1126 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Thebr_1127 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Thebr_0699 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thebr_1243 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thebr_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thebr_1440 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thebr_2194 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thebr_2246 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thebr_2319 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thebr_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Thebr_1834 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thebr_1220 recA protein K03553 recA; recombination protein RecA D Thebr_1039 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Thebr_1040 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Thebr_1038 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Thebr_1350 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Thebr_2057 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Thebr_2058 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D Thebr_0353 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Thebr_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Thebr_1334 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thebr_1391 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Thebr_2244 recombination protein RecR K06187 recR; recombination protein RecR D Thebr_1134 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Thebr_2059 recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Thebr_2060 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Thebr_0140 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Thebr_0488 Ku protein K10979 ku; DNA end-binding protein Ku D Thebr_0487 DNA polymerase LigD, ligase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D Thebr_0011 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Thebr_0010 DNA topoisomerase IV, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Thebr_1293 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Thebr_0256 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thebr_0949 DEAD/DEAH box helicase domain protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Thebr_2066 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Thebr_1219 regulatory protein RecX K03565 recX; regulatory protein D Thebr_0221 PHP domain protein K02347 polX; DNA polymerase (family X) D Thebr_0339 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thebr_1236 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tbo03029] D Thebr_1238 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Thebr_0790 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Thebr_1253 translation elongation factor Ts K02357 tsf; elongation factor Ts D Thebr_0368 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thebr_0382 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thebr_0346 translation elongation factor G K02355 fusA; elongation factor G D Thebr_0381 translation elongation factor G K02355 fusA; elongation factor G D Thebr_1393 GTP-binding protein Era K03595 era; GTPase D Thebr_0115 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thebr_2003 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thebr_1063 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thebr_1389 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thebr_0195 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thebr_1733 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Thebr_1732 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Thebr_1734 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Thebr_2319 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Thebr_1428 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thebr_1429 GrpE protein K03687 GRPE; molecular chaperone GrpE D Thebr_1761 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thebr_1762 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Thebr_0121 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Thebr_1427 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Thebr_0288 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_0819 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_2175 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Thebr_2337 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tbo02000] D Thebr_1534 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_1535 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_0216 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_0217 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thebr_0978 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thebr_1417 ABC transporter transmembrane region K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thebr_0972 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thebr_1418 ABC transporter related protein K18231 msr; macrolide transport system ATP-binding/permease protein D Thebr_0878 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Thebr_0879 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Thebr_0880 ABC transporter related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Thebr_1683 membrane lipoprotein lipid attachment site K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Thebr_1685 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Thebr_1684 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Thebr_0576 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Thebr_0643 extracellular solute-binding protein family 1 K25086 musE; maltose transport system substrate-binding protein D Thebr_0644 binding-protein-dependent transport systems inner membrane component K25087 musF; maltose transport system permease protein D Thebr_0645 binding-protein-dependent transport systems inner membrane component K25088 musG; maltose transport system permease protein D Thebr_0687 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D Thebr_0688 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thebr_0689 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thebr_0625 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Thebr_0626 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Thebr_0627 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Thebr_1549 extracellular solute-binding protein family 1 K17311 treS; trehalose transport system substrate-binding protein D Thebr_1551 binding-protein-dependent transport systems inner membrane component K17312 treT; trehalose transport system permease protein D Thebr_1550 binding-protein-dependent transport systems inner membrane component K17313 treU; trehalose transport system permease protein D Thebr_2102 extracellular solute-binding protein family 1 K10240 cebE; cellobiose transport system substrate-binding protein D Thebr_2101 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein D Thebr_2100 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein D Thebr_2083 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D Thebr_2084 inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Thebr_2085 ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Thebr_1880 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Thebr_1878 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Thebr_1877 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Thebr_1879 ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Thebr_2005 Conserved hypothetical protein CHP00245 K02069 STAR2; UDP-glucose/iron transport system permease protein D Thebr_2006 ABC transporter related protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D Thebr_1556 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thebr_0640 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thebr_0268 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thebr_0631 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thebr_1555 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Thebr_0269 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Thebr_0632 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Thebr_0270 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thebr_0633 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thebr_1554 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thebr_0849 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Thebr_0850 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Thebr_0851 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Thebr_0852 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Thebr_1810 extracellular solute-binding protein family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Thebr_1809 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Thebr_1808 ABC transporter related protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Thebr_1363 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Thebr_1362 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Thebr_1361 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Thebr_1730 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Thebr_1729 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Thebr_1728 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Thebr_1727 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Thebr_1726 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Thebr_1980 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_1505 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_0208 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_2234 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thebr_1979 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thebr_0207 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thebr_2233 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thebr_1978 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thebr_2232 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thebr_0205 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thebr_1977 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thebr_2231 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thebr_2230 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thebr_0204 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thebr_1976 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thebr_0663 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Thebr_0664 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Thebr_0665 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Thebr_1952 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein D Thebr_1951 transport system permease protein K25027 btuC; cobalamin transport system permease protein D Thebr_1950 ABC transporter related protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D Thebr_1971 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Thebr_1973 ABC-3 protein K09816 znuB; zinc transport system permease protein D Thebr_1972 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Thebr_2070 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Thebr_1934 cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D Thebr_1933 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Thebr_2071 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Thebr_2069 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Thebr_1935 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D Thebr_1932 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Thebr_2072 ABC transporter related protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Thebr_1568 BioY protein K03523 bioY; biotin transport system substrate-specific component D Thebr_0908 protein of unknown function DUF988 K16928 mtaT; energy-coupling factor transport system substrate-specific component D Thebr_0906 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Thebr_0416 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Thebr_0414 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thebr_0415 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thebr_0905 ABC transporter related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thebr_0521 ABC-2 type transporter K25151 gldF; gliding motility-associated transport system permease protein D Thebr_0520 ABC transporter related protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D Thebr_0522 ABC-type uncharacterized transport system K25153 gldG; gliding motility-associatede transport system auxiliary component D Thebr_0201 ABC-2 type transporter K25142 lnrN; linearmycin/streptolysin S transport system permease protein D Thebr_0200 ABC-2 type transporter K25143 lnrM; linearmycin/streptolysin S transport system permease protein D Thebr_0199 ABC transporter related protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein D Thebr_0579 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Thebr_0578 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Thebr_0424 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein D Thebr_0423 protein of unknown function DUF990 K25155 evrB; viologen exporter family transport system permease protein D Thebr_0422 ABC transporter related protein K25156 evrA; viologen exporter family transport system ATP-binding protein D Thebr_0301 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Thebr_1902 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thebr_0302 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thebr_2062 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Thebr_1057 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Thebr_1058 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thebr_2063 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thebr_0966 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thebr_0122 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Thebr_0707 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Thebr_2065 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Thebr_1847 major facilitator superfamily MFS_1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D Thebr_0991 major facilitator superfamily MFS_1 K08153 blt; MFS transporter, DHA1 family, multidrug resistance protein D Thebr_0345 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Thebr_0697 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D Thebr_1869 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thebr_1870 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D Thebr_0342 PTS system, fructose subfamily, IIA subunit K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D Thebr_0159 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thebr_1987 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D Thebr_1989 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D Thebr_1738 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thebr_1992 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thebr_1740 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thebr_1993 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thebr_1739 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Thebr_1995 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Thebr_2126 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D Thebr_2125 phosphotransferase system lactose/cellobiose-specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D Thebr_2115 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thebr_2113 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Thebr_2112 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203] D Thebr_2114 phosphotransferase system PTS sorbose-specific IIC subunit K17466 dgaC; D-glucosaminate PTS system EIIC component D Thebr_2029 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D Thebr_2030 PTS system ascorbate-specific transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D Thebr_0158 PTS system, fructose subfamily, IIA subunit K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Thebr_0558 dihydroxyacetone kinase, phosphotransfer subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D Thebr_0550 MIP family channel protein K02440 glpF; glycerol uptake facilitator D Thebr_1705 ammonium transporter K03320 amt; ammonium transporter, Amt family D Thebr_0938 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Thebr_2322 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D Thebr_1681 magnesium transporter K06213 mgtE; magnesium transporter D Thebr_1783 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Thebr_1782 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Thebr_2242 CrcB protein K06199 crcB; fluoride exporter D Thebr_2243 CrcB protein K06199 crcB; fluoride exporter D Thebr_0542 spore germination protein K06296 gerKB; spore germination protein KB D Thebr_0320 spore germination protein K06296 gerKB; spore germination protein KB D Thebr_0187 spore germination protein K06311 yndE; spore germination protein D Thebr_2154 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Thebr_0485 protein of unknown function DUF6 transmembrane K08978 TC.BAT1; bacterial/archaeal transporter family protein D Thebr_1717 2-keto-3-deoxygluconate permease K02526 kdgT; 2-keto-3-deoxygluconate permease D Thebr_0508 Na+/H+ antiporter NhaC-like protein K03315 nhaC; Na+:H+ antiporter, NhaC family D Thebr_0767 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Thebr_2107 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Thebr_2106 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Thebr_2211 permease for cytosine/purines uracil thiamine allantoin K10974 codB; cytosine permease D Thebr_2310 uracil-xanthine permease K02824 uraA; uracil permease D Thebr_1758 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Thebr_2298 Chromate transporter K07240 chrA; chromate transporter D Thebr_2299 Chromate transporter K07240 chrA; chromate transporter D Thebr_1606 natural resistance-associated macrophage protein K03322 mntH; manganese transport protein D Thebr_1655 natural resistance-associated macrophage protein K03322 mntH; manganese transport protein D Thebr_1185 natural resistance-associated macrophage protein K03322 mntH; manganese transport protein D Thebr_0543 Na+/Picotransporter K03324 yjbB; phosphate:Na+ symporter D Thebr_1863 Citrate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family D Thebr_0449 Na+/H+ antiporter MnhB subunit-related protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D Thebr_0450 NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D Thebr_0451 NADH/Ubiquinone/plastoquinone (complex I) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Thebr_0445 cation antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D Thebr_0446 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D Thebr_0447 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D Thebr_1744 stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D Thebr_2133 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thebr_0610 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Thebr_1926 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Thebr_1912 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Thebr_2002 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Thebr_2001 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Thebr_1791 membrane protein-like protein K23675 fmnP; riboflavin transporter D Thebr_0218 proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter D Thebr_1801 hypothetical protein K16788 niaX; niacin transporter D Thebr_1921 protein of unknown function DUF125 transmembrane K22736 VIT; vacuolar iron transporter family protein D Thebr_0834 stage V sporulation protein E K03588 ftsW; cell division protein FtsW D Thebr_1015 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Thebr_1608 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D Thebr_1629 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D Thebr_0932 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Thebr_1173 Conserved carboxylase region K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Thebr_0315 carboxyl transferase K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D Thebr_0317 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Thebr_0931 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Thebr_0316 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Thebr_1019 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Thebr_1590 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Thebr_1591 lipopolysaccharide biosynthesis protein K19420 epsA; protein tyrosine kinase modulator D Thebr_2074 FeoA family protein K04758 feoA; ferrous iron transport protein A D Thebr_2073 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:tbo02044] D Thebr_1098 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thebr_1097 Tfp pilus assembly protein PilE-like protein K02650 pilA; type IV pilus assembly protein PilA D Thebr_1094 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Thebr_1096 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC D Thebr_1104 cell division protein FtsA K02662 pilM; type IV pilus assembly protein PilM D Thebr_1105 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Thebr_1106 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D Thebr_1095 twitching motility protein K02669 pilT; twitching motility protein PilT D Thebr_0068 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thebr_2265 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thebr_0069 Type II secretion system F domain protein K12510 tadB; tight adherence protein B D Thebr_2264 Type II secretion system F domain protein K12510 tadB; tight adherence protein B D Thebr_0895 protein of unknown function YGGT K02221 yggT; YggT family protein D Thebr_1456 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Thebr_2149 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Thebr_1441 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Thebr_0102 beta-lactamase domain-containing protein K02238 comEC; competence protein ComEC D Thebr_1103 Late competence development protein ComFB K02241 comFB; competence protein ComFB D Thebr_0080 peptidase A24A prepilin type IV K02236 comC; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thebr_2253 peptidase A24A prepilin type IV K02236 comC; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thebr_1266 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Thebr_1267 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Thebr_1286 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Thebr_1284 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH D Thebr_1283 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Thebr_1273 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thebr_1271 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D Thebr_1270 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Thebr_1269 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Thebr_1268 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Thebr_0055 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Thebr_2273 type IV secretory pathway VirB4 components-like protein K12063 traC; conjugal transfer ATP-binding protein TraC D Thebr_0088 type IV secretory pathway VirD4 components-like protein K12071 traD; conjugal transfer pilus assembly protein TraD D Thebr_1800 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thebr_1049 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Thebr_0370 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thebr_1050 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Thebr_0758 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thebr_0403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thebr_1306 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thebr_1308 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thebr_1044 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thebr_2337 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:tbo02042] C 02022 Two-component system [BR:tbo02022] D Thebr_0848 PAS sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Thebr_0847 response regulator receiver K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Thebr_0509 Osmosensitive K channel His kinase sensor K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Thebr_0801 Sensor DegS domain protein K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Thebr_0311 PAS sensor protein K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Thebr_2163 response regulator receiver K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Thebr_1136 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Thebr_1779 LytTr DNA-binding region K02477 K02477; two-component system, LytTR family, response regulator D Thebr_1261 P2 response regulator binding domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thebr_1272 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thebr_1262 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Thebr_1531 ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:tbo02035] D Thebr_1261 P2 response regulator binding domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thebr_1036 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Thebr_1260 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Thebr_1259 CheC domain protein K03410 cheC; chemotaxis protein CheC D Thebr_1258 CheD family protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Thebr_1201 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Thebr_1262 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Thebr_1272 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thebr_1407 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1813 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1872 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1886 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_2294 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Thebr_1284 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH D Thebr_1283 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Thebr_1282 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Thebr_1271 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D Thebr_1270 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Thebr_1269 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Thebr_1268 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Thebr_1266 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Thebr_1267 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Thebr_1285 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Thebr_1274 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Thebr_1273 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thebr_1286 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Thebr_1275 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Thebr_1287 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Thebr_1280 Flagellar hook-length control protein-like, C-terminal domain protein K02414 fliK; flagellar hook-length control protein FliK D Thebr_1289 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Thebr_1288 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Thebr_1279 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Thebr_2139 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Thebr_2138 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Thebr_2137 Flagellar protein FlgJ-like protein K02395 flgJ; peptidoglycan hydrolase FlgJ D Thebr_1277 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE D Thebr_1829 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Thebr_1828 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Thebr_1824 flagellin domain protein K02406 fliC; flagellin D Thebr_1816 flagellar hook-associated 2 domain-containing protein K02407 fliD; flagellar hook-associated protein 2 D Thebr_1815 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Thebr_1257 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Thebr_1783 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Thebr_1782 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Thebr_1826 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW D Thebr_1831 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Thebr_1817 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG D Thebr_1281 MgtE intracellular region K02383 flbB; flagellar protein FlbB D Thebr_1276 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD D Thebr_1265 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D Thebr_1264 cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Thebr_1095 twitching motility protein K02669 pilT; twitching motility protein PilT D Thebr_1097 Tfp pilus assembly protein PilE-like protein K02650 pilA; type IV pilus assembly protein PilA D Thebr_1094 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Thebr_1096 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC D Thebr_1098 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thebr_1106 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D Thebr_1105 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Thebr_1104 cell division protein FtsA K02662 pilM; type IV pilus assembly protein PilM D Thebr_0068 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thebr_2265 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tbo04812] D Thebr_0596 AMMECR1 domain protein K06990 MEMO1; MEMO1 family protein D Thebr_1487 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thebr_2140 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thebr_0046 StbA family protein K18640 parM; plasmid segregation protein ParM D Thebr_0082 hypothetical protein K18640 parM; plasmid segregation protein ParM D Thebr_0841 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thebr_0840 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Thebr_1483 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Thebr_1482 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Thebr_0067 chromosome partitioning ATPase K03609 minD; septum site-determining protein MinD D Thebr_2266 chromosome partitioning ATPase K03609 minD; septum site-determining protein MinD D Thebr_1481 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Thebr_2330 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Thebr_2329 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thebr_2331 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tbo04147] D Thebr_0757 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thebr_0753 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thebr_0754 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thebr_0702 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thebr_0540 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Thebr_2055 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Thebr_1761 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thebr_1428 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thebr_0713 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thebr_1760 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Thebr_0368 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thebr_0382 translation elongation factor Tu K02358 tuf; elongation factor Tu D Thebr_1403 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Thebr_2046 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thebr_0594 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thebr_1650 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1] D Thebr_0404 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Thebr_1053 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Thebr_0236 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thebr_0235 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thebr_0621 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Thebr_0551 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Thebr_1532 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1706 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thebr_1937 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Thebr_0151 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_2123 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thebr_1749 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thebr_2034 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_0807 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thebr_1002 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thebr_0755 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thebr_0239 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:tbo02048] D Thebr_0140 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Thebr_0141 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Thebr_0131 CRISPR-associated HD domain protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Thebr_0139 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Thebr_0546 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Thebr_0127 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D Thebr_0128 CRISPR-associated protein, TM1802 family K19114 csh1; CRISPR-associated protein Csh1 D Thebr_0129 CRISPR-associated protein, Csh2 family K19115 csh2; CRISPR-associated protein Csh2 D Thebr_0130 CRISPR-associated protein Cas5, Hmari subtype K19116 cas5h; CRISPR-associated protein Cas5h D Thebr_0945 protein of unknown function DUF324 K19134 csx10; CRISPR-associated protein Csx10 D Thebr_1642 CRISPR-associated RAMP protein, Cmr1 family K07061 cmr1; CRISPR-associated protein Cmr1 D Thebr_1821 Type II site-specific deoxyribonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] D Thebr_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Thebr_0956 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D Thebr_1623 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D Thebr_0501 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Thebr_1953 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Thebr_0500 putative transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D Thebr_1515 hypothetical protein K06218 relE; mRNA interferase RelE/StbE D Thebr_1711 addiction module toxin, RelE/StbE family K06218 relE; mRNA interferase RelE/StbE D Thebr_1516 prevent-host-death family protein K18923 stbD; antitoxin StbD D Thebr_1618 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D Thebr_1619 prevent-host-death family protein K19159 yefM; antitoxin YefM D Thebr_0841 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thebr_1487 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thebr_2140 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thebr_1454 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thebr_0288 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thebr_0819 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:tbo04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:tbo01504] D Thebr_1418 ABC transporter related protein K18231 msr; macrolide transport system ATP-binding/permease protein D Thebr_0489 Peptidoglycan-binding domain 1 protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tbo00537] D Thebr_0540 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tbo03100] D Thebr_R0010 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thebr_R0033 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thebr_R0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thebr_R0057 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0049 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thebr_R0023 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thebr_R0013 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thebr_R0065 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thebr_R0016 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thebr_R0029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thebr_R0032 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Thebr_R0053 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thebr_R0043 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thebr_R0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thebr_R0007 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thebr_R0044 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thebr_R0031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0056 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0064 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thebr_R0054 tRNA-His K14226 tRNA-His; tRNA His D Thebr_R0011 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thebr_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0004 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0047 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thebr_R0048 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thebr_R0020 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thebr_R0052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thebr_R0005 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0015 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0006 tRNA-Met K14230 tRNA-Met; tRNA Met D Thebr_R0017 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thebr_R0030 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thebr_R0034 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thebr_R0060 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thebr_R0046 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thebr_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0071 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thebr_R0008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thebr_R0018 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thebr_R0072 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thebr_R0035 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Thebr_R0058 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thebr_R0019 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thebr_R0059 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0028 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0027 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val D Thebr_R0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0063 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0068 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thebr_R0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0039 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0062 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0067 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thebr_R0038 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0066 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0061 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thebr_R0069 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Thebr_R0025 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Thebr_R0042 ssrA; tmRNA as predicted by Rfam (RF00023), score 216.11 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Thebr_1715 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D Thebr_2027 iron-containing alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D Thebr_1637 iron-containing alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D Thebr_0812 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D Thebr_0813 Transketolase central region K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D Thebr_0326 Shikimate/quinate 5-dehydrogenase K14330 K14330; fatty aldehyde-generating acyl-ACP reductase [EC:1.2.1.80] D Thebr_1460 NAD/NADP octopine/nopaline dehydrogenase K04940 odh; opine dehydrogenase [EC:1.5.1.28] D Thebr_0012 NADH:flavin oxidoreductase/NADH oxidase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D Thebr_0921 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Thebr_1493 hypothetical protein K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3] D Thebr_1492 NADH dehydrogenase (quinone) K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3] D Thebr_1491 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D Thebr_0441 Superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2] D Thebr_0249 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2] D Thebr_0240 Ferroxidase K02217 ftnA; ferritin [EC:1.16.3.2] D Thebr_0223 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Thebr_1774 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Thebr_0999 arsenate reductase (thioredoxin) K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Thebr_0670 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Thebr_0736 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Thebr_0452 NADH/Ubiquinone/plastoquinone (complex I) K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-] D Thebr_1955 rRNA (guanine-N(2)-)-methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D Thebr_1068 hypothetical protein K21399 ortA; 2-amino-4-ketopentanoate thiolase alpha subunit [EC:2.3.1.263] D Thebr_1069 Pyridoxal-5'-phosphate-dependent protein beta subunit K21400 ortB; 2-amino-4-ketopentanoate thiolase beta subunit [EC:2.3.1.263] D Thebr_1557 glycoside hydrolase family 65 central catalytic K10231 kojP; kojibiose phosphorylase [EC:2.4.1.230] D Thebr_2227 glycosidase related protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D Thebr_2226 glycosidase related protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D Thebr_0649 protein of unknown function DUF43 K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128] D Thebr_1575 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Thebr_0773 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Thebr_0245 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Thebr_1716 type III effector Hrp-dependent outer domain protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D Thebr_1335 DAK2 domain fusion protein YloV K07030 fakA; fatty acid kinase [EC:2.7.2.18] D Thebr_1387 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Thebr_0052 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0104 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0144 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0169 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0538 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0912 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0987 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_1465 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_1811 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_1917 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thebr_0469 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Thebr_1149 anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D Thebr_0591 HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D Thebr_0351 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D Thebr_0992 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Thebr_0703 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Thebr_0307 stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D Thebr_1589 Protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D Thebr_1214 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Thebr_1092 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-] D Thebr_2315 phosphoesterase RecJ domain protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D Thebr_1396 metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D Thebr_2183 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Thebr_1349 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Thebr_0547 delta-lactam-biosynthetic de-N-acetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D Thebr_1016 LmbE family protein K22135 bshB2; N-acetylglucosamine malate deacetylase 2 [EC:3.5.1.-] D Thebr_0891 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Thebr_1969 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Thebr_0464 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Thebr_2152 Protein-tyrosine phosphatase, low molecular weight K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D Thebr_0497 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Thebr_1576 PP-loop domain protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Thebr_1573 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Thebr_1574 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Thebr_2324 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D Thebr_2169 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Thebr_2170 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Thebr_2165 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Thebr_0237 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D Thebr_1585 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D Thebr_0286 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Thebr_0220 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D Thebr_0333 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Thebr_2179 hypothetical protein K11184 chr; catabolite repression HPr-like protein D Thebr_2099 glycoside hydrolase family 3 domain protein K17641 bxlA; beta-xylosidase C 99982 Energy metabolism D Thebr_0742 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K05337 fer; ferredoxin D Thebr_2168 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Thebr_2167 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Thebr_2166 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Thebr_1958 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D Thebr_0126 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D Thebr_0448 hypothetical protein K14113 ehbD; energy-converting hydrogenase B subunit D D Thebr_1151 protein of unknown function DUF1458 K09165 K09165; dodecin C 99983 Lipid metabolism D Thebr_1333 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Thebr_0893 alanine racemase domain protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Thebr_1544 cell wall hydrolase SleB K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D Thebr_1051 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Thebr_0877 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D Thebr_0780 Cold-shock protein DNA-binding protein K03704 cspA; cold shock protein D Thebr_1798 Tex-like protein K06959 tex; protein Tex D Thebr_1354 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A D Thebr_0005 hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D Thebr_0265 RNA binding S1 domain protein K07571 K07571; S1 RNA binding domain protein C 99975 Protein processing D Thebr_0350 UvrB/UvrC protein K19411 mcsA; protein arginine kinase activator D Thebr_1692 trigger factor K03545 tig; trigger factor D Thebr_1383 SsrA-binding protein K03664 smpB; SsrA-binding protein D Thebr_1375 AIR synthase related protein domain protein K04655 hypE; hydrogenase expression/formation protein HypE D Thebr_1299 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Thebr_1163 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Thebr_0603 Resolvase domain protein K07450 K07450; putative resolvase D Thebr_1488 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Thebr_1296 Uncharacterized protein family UPF0102 K07460 yraN; putative endonuclease D Thebr_1294 DNA protecting protein DprA K04096 smf; DNA processing protein D Thebr_0731 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Thebr_0154 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0179 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0225 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0512 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0676 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0868 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0957 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_1419 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_2089 Integrase catalytic region K07482 K07482; transposase, IS30 family D Thebr_0274 transposase IS3/IS911 family protein K07483 K07483; transposase D Thebr_0437 transposase IS3/IS911 family protein K07483 K07483; transposase D Thebr_1420 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Thebr_1802 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Thebr_1891 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Thebr_2300 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Thebr_0135 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Thebr_0136 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Thebr_0137 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Thebr_0939 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Thebr_2090 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Thebr_0202 hypothetical protein K07491 rayT; REP-associated tyrosine transposase D Thebr_0276 transposase mutator type K07493 K07493; putative transposase D Thebr_2081 transposase mutator type K07493 K07493; putative transposase D Thebr_2095 transposase, IS605 OrfB family K07496 K07496; putative transposase D Thebr_2135 transposase, IS605 OrfB family K07496 K07496; putative transposase D Thebr_1677 transposase, IS605 OrfB family K07496 K07496; putative transposase D Thebr_0434 Integrase catalytic region K07497 K07497; putative transposase D Thebr_0436 Integrase catalytic region K07497 K07497; putative transposase D Thebr_0060 Integrase catalytic region K07497 K07497; putative transposase D Thebr_1452 Integrase catalytic region K07497 K07497; putative transposase D Thebr_1919 Integrase catalytic region K07497 K07497; putative transposase D Thebr_0247 Integrase catalytic region K07498 K07498; putative transposase D Thebr_0100 integrase family protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D Thebr_2245 Uncharacterized protein family UPF0133 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Thebr_0637 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Thebr_0444 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family C 99978 Cell growth D Thebr_0994 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D Thebr_2239 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D Thebr_0720 hypothetical protein K06333 cotJB; spore coat protein JB D Thebr_0719 manganese containing catalase K06334 cotJC; spore coat protein JC D Thebr_2336 single-stranded nucleic acid binding R3H domain-containing protein K06346 jag; spoIIIJ-associated protein D Thebr_1188 urea amidolyase related protein K06350 kipA; antagonist of KipI D Thebr_1187 Allophanate hydrolase subunit 1 K06351 kipI; inhibitor of KinA D Thebr_2187 nucleoside recognition domain protein K06373 spmA; spore maturation protein A D Thebr_2186 nucleoside recognition domain protein K06374 spmB; spore maturation protein B D Thebr_1148 anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D Thebr_1145 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D Thebr_1436 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D Thebr_0855 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D Thebr_0189 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D Thebr_1115 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D Thebr_1116 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D Thebr_1117 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D Thebr_1118 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D Thebr_1119 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D Thebr_1120 stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF D Thebr_1121 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D Thebr_1122 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH D Thebr_0864 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D Thebr_1152 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D Thebr_1153 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D Thebr_1154 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D Thebr_0166 SpoVG family protein K06412 spoVG; stage V sporulation protein G D Thebr_1211 stage V sporulation protein K K06413 spoVK; stage V sporulation protein K D Thebr_1215 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D Thebr_1311 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D Thebr_1331 small acid-soluble spore protein alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Thebr_1332 small acid-soluble spore protein alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Thebr_1560 small acid-soluble spore protein alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Thebr_0192 hypothetical protein K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D Thebr_0743 small acid-soluble spore protein alpha/beta type K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D Thebr_0995 small, acid-soluble spore protein I K06426 sspI; small acid-soluble spore protein I (minor) D Thebr_1998 small, acid-soluble spore protein tlp K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein) D Thebr_0178 sporulation peptidase YabG K06436 yabG; spore coat assemly protein D Thebr_1398 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D Thebr_0321 GerA spore germination protein K06295 gerKA; spore germination protein KA D Thebr_0322 germination protein, Ger(x)C family K06297 gerKC; spore germination protein KC D Thebr_0188 germination protein, Ger(x)C family K06297 gerKC; spore germination protein KC D Thebr_0186 GerA spore germination protein K06310 yndD; spore germination protein D Thebr_0191 germination protein YpeB K06313 ypeB; spore germination protein C 99993 Cell motility C 99995 Signaling proteins D Thebr_0443 carbon starvation protein CstA K06200 cstA; carbon starvation protein D Thebr_1503 GTP-binding protein TypA K06207 typA; GTP-binding protein D Thebr_1397 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D Thebr_1059 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Thebr_2064 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein C 99994 Others D Thebr_0853 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D Thebr_0883 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Thebr_1925 protein of unknown function DUF1648 K26996 sdpI; immunity protein, SdpI family D Thebr_1663 protein of unknown function DUF1648 K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D Thebr_0467 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein D Thebr_0592 PHP domain protein K04477 ycdX; putative hydrolase D Thebr_0683 PHP domain protein K04477 ycdX; putative hydrolase D Thebr_0725 Patatin K07001 K07001; NTE family protein D Thebr_0680 Patatin K07001 K07001; NTE family protein D Thebr_0123 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Thebr_0124 SufBD protein K09015 sufD; Fe-S cluster assembly protein SufD D Thebr_1966 LemA family protein K03744 lemA; LemA protein D Thebr_1614 LemA family protein K03744 lemA; LemA protein D Thebr_1438 membrane protein of unknown function K08972 K08972; putative membrane protein D Thebr_0278 Protein of unknown function DUF2078, membrane K08982 K08982; putative membrane protein D Thebr_0282 Protein of unknown function DUF2078, membrane K08982 K08982; putative membrane protein C 99997 Function unknown D Thebr_0971 Radical SAM domain protein K06871 K06871; uncharacterized protein D Thebr_0977 Radical SAM domain protein K06871 K06871; uncharacterized protein D Thebr_1047 Radical SAM domain protein K06871 K06871; uncharacterized protein D Thebr_1416 Radical SAM domain protein K06871 K06871; uncharacterized protein D Thebr_1957 protein of unknown function DUF477 K06872 K06872; uncharacterized protein D Thebr_0710 alpha/beta hydrolase fold protein K06889 K06889; uncharacterized protein D Thebr_0638 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Thebr_1031 CoA-binding domain protein K06929 K06929; uncharacterized protein D Thebr_0672 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Thebr_2042 protein of unknown function DUF296 K06934 K06934; uncharacterized protein D Thebr_1304 hypothetical protein K06960 K06960; uncharacterized protein D Thebr_0366 protein of unknown function DUF901 K06962 K06962; uncharacterized protein D Thebr_1346 peptidase membrane zinc metallopeptidase K06973 K06973; uncharacterized protein D Thebr_1653 Nucleotide binding protein PINc K07063 K07063; uncharacterized protein D Thebr_1605 DNA polymerase beta domain protein region K07075 K07075; uncharacterized protein D Thebr_1652 DNA polymerase beta domain protein region K07075 K07075; uncharacterized protein D Thebr_0210 aldo/keto reductase K07079 K07079; uncharacterized protein D Thebr_0770 permease K07089 K07089; uncharacterized protein D Thebr_1983 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thebr_0937 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thebr_1032 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thebr_1033 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Thebr_1613 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Thebr_1656 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Thebr_1722 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Thebr_1803 3H domain-containing protein K07105 K07105; uncharacterized protein D Thebr_2203 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Thebr_2205 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Thebr_2293 HI0933 family protein K07137 K07137; uncharacterized protein D Thebr_2132 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K07138 K07138; uncharacterized protein D Thebr_1770 protein of unknown function DUF554 K07150 K07150; uncharacterized protein D Thebr_2338 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Thebr_1567 protein of unknown function DUF151 K08999 K08999; uncharacterized protein D Thebr_1401 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D Thebr_2210 protein of unknown function DUF917 K09703 K09703; uncharacterized protein D Thebr_2213 protein of unknown function DUF917 K09703 K09703; uncharacterized protein D Thebr_0300 protein of unknown function DUF1284 K09706 K09706; uncharacterized protein D Thebr_1347 protein of unknown function DUF116 K09729 K09729; uncharacterized protein D Thebr_1256 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Thebr_0491 protein of unknown function DUF503 K09764 K09764; uncharacterized protein D Thebr_1586 Protein of unknown function DUF2225 K09766 K09766; uncharacterized protein D Thebr_2195 protein of unknown function DUF327 K09770 K09770; uncharacterized protein D Thebr_1580 protein of unknown function DUF458 K09776 K09776; uncharacterized protein D Thebr_1307 helix-turn-helix protein YlxM/p13 family protein K09787 K09787; uncharacterized protein D Thebr_0856 hypothetical protein K05739 seaA; uncharacterized protein D Thebr_1469 protein of unknown function DUF464 K07584 ysxB; uncharacterized protein D Thebr_1240 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 22, 2024