+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Theobroma cacao (cacao)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        18610701 DNA-directed RNA polymerase II subunit 1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        18596855 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        18607988 DNA-directed RNA polymerases II, IV and V subunit 3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        18614612 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        18611686 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        18597364 DNA-directed RNA polymerases IV and V subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        18590613 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        18603623 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        18588559 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18589470 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18598796 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18587326 DNA-directed RNA polymerases IV and V subunit 5B	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18605508 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18594588 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18586467 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18595592 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18609497 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        18591123 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        18606443 DNA-directed RNA polymerase IV subunit 1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        18587233 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        18587707 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        18603126 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        18587120 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        18587124 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        18590635 transcription initiation factor IIA large subunit	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        18591836 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        18589886 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18610956 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        18598897 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        18611796 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18611797 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        108661132 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18599738 TATA-box-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18600285 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18602386 transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        18604052 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        18614084 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18592004 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18587715 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        18612400 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18593403 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18589583 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        18601676 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        18598001 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        18596398 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        18596227 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        18587658 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        18589675 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        18598204 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18596210 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18600861 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        18612277 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        18606485 general transcription factor IIE subunit 2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        18597265 transcription initiation factor IIF subunit alpha	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        18591474 transcription initiation factor IIF subunit beta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        18586361 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        18590160 probable RNA polymerase II transcription factor B subunit 1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        18590083 GTF2H2; general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        18592319 RNA polymerase II transcription factor B subunit 4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        18596870 RNA polymerase II transcription factor B subunit 2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        18606560 DNA repair helicase XPB1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        18613370 DNA repair helicase XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        108660422 RNA polymerase II transcription factor B subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        18604245 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        18611514 uncharacterized LOC18611514	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        18600447 cyclin-H1-1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        18596055 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        18597258 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        18588731 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        18611538 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        18588302 mediator of RNA polymerase II transcription subunit 20a	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        18599877 mediator of RNA polymerase II transcription subunit 22a	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        18593132 mediator of RNA polymerase II transcription subunit 22a	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        18613578 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        18599197 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        18605975 mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        18595905 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        18605251 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        18600190 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        18606748 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        18612701 cyclin-C1-2	K15161 CCNC; cyclin-C 
E        18598720 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        18609855 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        18610529 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        18598399 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        18608156 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        18613404 mediator of RNA polymerase II transcription subunit 33B	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        18602879 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        18600050 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        18613245 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        18610776 transformation/transcription domain-associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        18610039 transcriptional adapter ADA2a	K11314 TADA2A; transcriptional adapter 2-alpha 
E        18597313 transcriptional adapter ADA2b	K11314 TADA2A; transcriptional adapter 2-alpha 
E        18604052 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        18614084 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18592004 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18587715 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        18612400 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18593403 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18589583 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        18596227 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        18587658 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        18598204 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18596210 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18590990 SAGA-associated factor 11 homolog	K11363 SGF11; SAGA-associated factor 11 
E        18600857 uncharacterized LOC18600857	K11364 SGF29; SAGA-associated factor 29 
E        18589939 protein CHROMATIN REMODELING 5	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        18601007 transcription and mRNA export factor SUS1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        18588845 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        18587687 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        18599196 pre-mRNA-splicing factor RSE1	K12830 SF3B3; splicing factor 3B subunit 3 
E        18586254 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        18614118 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        18606330 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        18607797 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18605146 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18592380 SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18592085 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18605091 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        18600999 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        18589722 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        18606330 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        18606730 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        18611912 RNA polymerase II transcriptional coactivator KIWI	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        18610366 cell division cycle and apoptosis regulator protein 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        18602202 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        18587505 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        18608422 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        18611832 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18592527 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18587030 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
E        18587005 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        18598965 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        18598158 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        18597109 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        18605417 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        18607833 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18607089 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        18586963 uncharacterized LOC18586963	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        18590611 serine/threonine-protein phosphatase PP1 isozyme 2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18606598 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18603210 serine/threonine-protein phosphatase PP1 isozyme 2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18601297 serine/threonine-protein phosphatase PP1 isozyme 1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18600490 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18600080 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18586006 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18597540 uncharacterized LOC18597540	K06100 SYMPK; symplekin 
E        18591877 uncharacterized LOC18591877	K06100 SYMPK; symplekin 
E        18586632 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        18591532 5'-3' exoribonuclease 3	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        18606134 decapping nuclease DXO homolog, chloroplastic	K14845 RAI1; RAT1-interacting protein 
E        18611639 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        18601068 regulation of nuclear pre-mRNA domain-containing protein 2	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        18599744 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        18610791 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        18596021 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        18603015 PHP; protein CDC73 homolog	K15175 CDC73; parafibromin 
E        18588301 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        18604815 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        18596887 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        18601942 ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        18602947 cyclin-T1-4	K15188 CCNT; cyclin T 
E        18596363 cyclin-T1-4	K15188 CCNT; cyclin T 
E        18591437 cyclin-T1-4	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        18602947 cyclin-T1-4	K15188 CCNT; cyclin T 
E        18596363 cyclin-T1-4	K15188 CCNT; cyclin T 
E        18591437 cyclin-T1-4	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        18588549 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        18607885 la-related protein 6C	K15191 LARP7; La-related protein 7 
E        18597401 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        18596514 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        18602947 cyclin-T1-4	K15188 CCNT; cyclin T 
E        18596363 cyclin-T1-4	K15188 CCNT; cyclin T 
E        18591437 cyclin-T1-4	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        18599740 TATA-binding protein-associated factor BTAF1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        18604965 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        18587058 dr1-associated corepressor homolog	K21752 DRAP1; Dr1-associated corepressor 
E        18590010 dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        18611385 protein spt2	K15193 SPTY2D1; protein SPT2 
E        18597562 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        18596883 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        18608860 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        18589419 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        18587090 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        18596623 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18596621 probable C-terminal domain small phosphatase	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18596622 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18585848 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18606831 transcription factor IWS1	K17498 SPN1; transcription factor SPN1 
E        18593270 protein IWS1 homolog	K17498 SPN1; transcription factor SPN1 
E        18593244 protein IWS1 homolog	K17498 SPN1; transcription factor SPN1 
E        18593273 protein IWS1 homolog	K17498 SPN1; transcription factor SPN1 
E        18593274 protein IWS1 homolog	K17498 SPN1; transcription factor SPN1 
E        18587156 transcription factor iws1	K17498 SPN1; transcription factor SPN1 
E        18607474 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        18590988 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        18600577 RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        18596299 agamous-like MADS-box protein AGL61	K12412 MCM1; pheromone receptor transcription factor 
E        18594571 MADS-box transcription factor 1	K12412 MCM1; pheromone receptor transcription factor 
E        18603131 GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
E        18612578 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        18591970 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        18603906 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        18587075 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        18593252 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        18590572 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        18605573 DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        18605330 DNA-directed RNA polymerase III subunit rpc4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        18588303 uncharacterized LOC18588303	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        18610966 DNA-directed RNA polymerase III subunit RPC5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        18595242 DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        18610623 ribosomal L1 domain-containing protein CG13096	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        18613229 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        18603050 DNA-directed RNA polymerase III subunit RPC9	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        18613939 DNA-directed RNA polymerase III subunit RPC10	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        18588559 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18589470 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18598796 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18587326 DNA-directed RNA polymerases IV and V subunit 5B	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18605508 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18594588 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18586467 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18595592 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18609497 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        18591123 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        18592986 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        18611796 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18611797 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        108661132 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18599738 TATA-box-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18600285 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18599780 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        18612236 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        18591707 transcription factor TFIIIB component B''	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        18596208 uncharacterized LOC18596208	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        18612763 uncharacterized LOC18612763	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        18592802 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        18605820 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        18593883 general transcription factor 3C polypeptide 6	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        18605820 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        18592802 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        18588812 uncharacterized LOC18588812	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        18593093 snRNA-activating protein complex subunit	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        18601847 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        18599019 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        18587096 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        18593252 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        18590572 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        18606036 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        18591581 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        18588559 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18589470 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18598796 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18587326 DNA-directed RNA polymerases IV and V subunit 5B	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18605508 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18594588 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18586467 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18595592 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18609497 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        18591123 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        18611796 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18611797 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        108661132 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18599738 TATA-box-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18600285 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        18606663 high mobility group B protein 13	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        18610618 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        18607882 eukaryotic translation initiation factor 5B	K15223 UAF30; upstream activation factor subunit UAF30 
E        18611075 upstream activation factor subunit spp27	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        18608422 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        18611832 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18592527 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        18603449 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        9978151 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        9978095 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        9978093 rpoC2; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        9978094 rpoC1; RNA polymerase beta	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        18599649 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        18588019 RNA polymerase sigma factor sigC	K03093 sigI; RNA polymerase sigma-I factor 
E        18605719 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        18589886 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18610956 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        18598897 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        18612277 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
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#Last updated: April 9, 2024