+D GENES KO
#
KEGG Orthology (KO) - Tannerella forsythia
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:tfo00010]
D BFO_0991 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BFO_3358 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_1095 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BFO_0230 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D BFO_3329 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BFO_2613 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BFO_0261 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BFO_0227 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BFO_0709 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D BFO_3154 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D BFO_2068 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BFO_1460 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BFO_2975 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_3126 nifJ; pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D BFO_2835 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_1760 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_2833 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_1761 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BFO_0988 CoA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D BFO_0788 mro_1; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BFO_2039 mro_2; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BFO_0783 putative glucose-1-phosphatase K01085 agp; glucose-1-phosphatase [EC:3.1.3.10]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_0936 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:tfo00020]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_2835 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_1760 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_2833 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_1761 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_2832 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D BFO_2836 photosystem I iron-sulfur center family protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D BFO_1637 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BFO_1638 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BFO_1636 sdhC; succinate dehydrogenase cytochrome B subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BFO_1218 fumB; fumarate hydratase class I, anaerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BFO_2712 putative pyruvate carboxylase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D BFO_0936 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D BFO_3126 nifJ; pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:tfo00030]
D BFO_3358 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BFO_0458 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BFO_0457 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D BFO_0442 gnd; phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BFO_0426 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BFO_0412 Transketolase, thiamine pyrophosphate binding domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D BFO_0507 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D BFO_0411 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D BFO_1154 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_1593 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BFO_2294 KDPG and KHG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D BFO_3308 carbohydrate kinase, PfkB family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D BFO_2292 carbohydrate kinase, PfkB family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D BFO_3329 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_1095 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BFO_0230 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:tfo00040]
D BFO_2288 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D BFO_1156 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D BFO_0540 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BFO_0426 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BFO_2806 carbohydrate kinase, FGGY family protein K00854 xylB; xylulokinase [EC:2.7.1.17]
D BFO_2807 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D BFO_0217 carbohydrate kinase, FGGY family protein K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D BFO_0214 putative rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D BFO_0306 fucI; arabinose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
C 00051 Fructose and mannose metabolism [PATH:tfo00051]
D BFO_1036 carbohydrate kinase, PfkB family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BFO_2059 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BFO_0973 phosphomannose isomerase type I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BFO_0815 phosphomannose isomerase type I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BFO_1882 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D BFO_2944 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D BFO_3084 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D BFO_3081 fcl; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D BFO_0306 fucI; arabinose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D BFO_0216 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D BFO_0217 carbohydrate kinase, FGGY family protein K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D BFO_0214 putative rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_1095 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BFO_0230 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D BFO_2807 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D BFO_3329 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BFO_2613 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BFO_0411 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:tfo00052]
D BFO_0788 mro_1; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BFO_2039 mro_2; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BFO_2041 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BFO_0284 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_0991 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BFO_0450 putative beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_0300 putative beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2553 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_1381 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2968 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_1388 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_1095 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism
D BFO_0540 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:tfo00500]
D BFO_0699 glycosyl hydrolase family 3, C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_2182 glycosyl hydrolase family 3, N-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_0028 polysaccharide deacetylase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BFO_0320 starch synthase catalytic domain protein K00703 glgA; starch synthase [EC:2.4.1.21]
D BFO_0170 glycosyltransferase, group 1 family protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D BFO_0974 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BFO_0816 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BFO_3305 glgP; alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D BFO_0169 glycosyl hydrolase, family 57 K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D BFO_2272 hypothetical protein K21574 susB; glucan 1,4-alpha-glucosidase [EC:3.2.1.3]
D BFO_2501 putative 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_0991 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BFO_3358 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BFO_1036 carbohydrate kinase, PfkB family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BFO_2059 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tfo00520]
D BFO_1923 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BFO_2547 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D BFO_3156 glucosamine-6-phosphate deaminase-like protein K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D BFO_1807 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D BFO_1036 carbohydrate kinase, PfkB family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BFO_2059 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BFO_0044 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D BFO_1521 nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D BFO_2203 N-acylglucosamine 2-epimerase K01787 RENBP; N-acylglucosamine 2-epimerase [EC:5.1.3.8]
D BFO_2202 dihydrodipicolinate synthetase family K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D BFO_1065 neuC; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D BFO_1050 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D BFO_1051 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D BFO_2943 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D BFO_1077 oxidoreductase, NAD-binding domain protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D BFO_0923 degT; pleiotropic regulatory protein DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D BFO_1995 bacterial transferase hexapeptide repeat protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D BFO_2566 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
D BFO_0116 hypothetical protein K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D BFO_1066 neuB; N-acetylneuraminate synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D BFO_1063 putative N-acylneuraminate cytidylyltransferase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D BFO_3112 carbohydrate binding domain protein K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D BFO_2248 NAD dependent epimerase/dehydratase family protein K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D BFO_0991 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_0540 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BFO_2041 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BFO_0284 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BFO_3358 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BFO_0973 phosphomannose isomerase type I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BFO_0815 phosphomannose isomerase type I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BFO_1882 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D BFO_2944 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D BFO_3084 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D BFO_1073 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D BFO_3081 fcl; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
C 00620 Pyruvate metabolism [PATH:tfo00620]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BFO_3126 nifJ; pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D BFO_2835 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_1760 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_2833 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_1761 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_1345 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BFO_1346 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BFO_1460 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BFO_0988 CoA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D BFO_2156 glyoxalase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D BFO_2868 metallo-beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D BFO_0962 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D BFO_2712 putative pyruvate carboxylase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BFO_1218 fumB; fumarate hydratase class I, anaerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D BFO_0936 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D BFO_2975 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D BFO_0819 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tfo00630]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BFO_0966 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D BFO_2746 mutA; methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_2747 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_0414 HAD hydrolase, family IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D BFO_2319 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BFO_1924 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BFO_2867 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D BFO_2929 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_1113 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D BFO_2628 Tat pathway signal sequence domain protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D BFO_2294 KDPG and KHG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:tfo00640]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BFO_0988 CoA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D BFO_1345 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BFO_1346 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_1489 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D BFO_0966 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D BFO_2746 mutA; methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_2747 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_1726 putative methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:tfo00650]
D BFO_1489 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D BFO_0962 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D BFO_0963 putative glutaconyl-CoA decarboxylase subunit gamma K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D BFO_1637 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BFO_1638 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BFO_1636 sdhC; succinate dehydrogenase cytochrome B subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BFO_1488 aldehyde-alcohol dehydrogenase family protein K18119 sucD; succinate-semialdehyde dehydrogenase [EC:1.2.1.76]
D BFO_1487 alcohol dehydrogenase, iron-dependent K18120 4hbD; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61]
D BFO_1486 cat; 4-hydroxybutyrate coenzyme A transferase K18122 cat2; 4-hydroxybutyrate CoA-transferase [EC:2.8.3.-]
D BFO_1484 abfD; gamma-aminobutyrate metabolism dehydratase/isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D BFO_3126 nifJ; pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D BFO_2835 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_1760 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_2833 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_1761 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
C 00660 C5-Branched dibasic acid metabolism [PATH:tfo00660]
D BFO_0823 HMGL-like protein K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D BFO_0820 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BFO_0822 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BFO_0824 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:tfo00562]
D BFO_0722 Tat pathway signal sequence domain protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D BFO_2928 oxidoreductase, NAD-binding domain protein K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-]
D BFO_2613 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:tfo00190]
D BFO_1637 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BFO_1638 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BFO_1636 sdhC; succinate dehydrogenase cytochrome B subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BFO_1792 cydA; cytochrome D ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D BFO_1791 putative cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D BFO_0657 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BFO_0664 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BFO_0656 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BFO_0658 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BFO_0663 ATP synthase, delta/epsilon subunit, beta-sandwich domain protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BFO_0661 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BFO_0659 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BFO_0660 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BFO_0557 putative V-type sodium ATPase, catalytic A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D BFO_0556 putative V-type sodium ATPase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D BFO_0555 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D BFO_0559 putative ATP synthase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D BFO_0554 V-type ATPase 116kDa subunit family protein K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D BFO_0553 putative V-type sodium ATPase, K subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D BFO_2999 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D BFO_2020 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:tfo00710]
D BFO_0227 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BFO_0261 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BFO_3329 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BFO_0412 Transketolase, thiamine pyrophosphate binding domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D BFO_0411 rpiB; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D BFO_2613 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BFO_0426 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BFO_0507 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D BFO_0936 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D BFO_2975 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:tfo00720]
D BFO_3126 nifJ; pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D BFO_2975 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D BFO_2712 putative pyruvate carboxylase subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BFO_1218 fumB; fumarate hydratase class I, anaerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D BFO_1637 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BFO_1638 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BFO_1636 sdhC; succinate dehydrogenase cytochrome B subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D BFO_1484 abfD; gamma-aminobutyrate metabolism dehydratase/isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D BFO_2835 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_1760 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D BFO_2833 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_1761 thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D BFO_2832 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D BFO_2836 photosystem I iron-sulfur center family protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D BFO_0966 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D BFO_2746 mutA; methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_2747 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_3051 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D BFO_0773 putative methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D BFO_2558 methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D BFO_1346 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BFO_1345 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:tfo00680]
D BFO_1924 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BFO_2068 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BFO_3329 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_1095 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D BFO_1345 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BFO_1346 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BFO_0709 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D BFO_3154 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D BFO_0195 D-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BFO_0193 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:tfo00910]
D BFO_1783 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D BFO_1122 gdh; glutamate dehydrogenase, NAD-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BFO_2319 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00920 Sulfur metabolism [PATH:tfo00920]
D BFO_3093 DHHA1 domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D BFO_0336 putative serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D BFO_0337 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D BFO_0840 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:tfo00061]
D BFO_1090 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_1309 putative acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_1316 putative acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_3342 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BFO_1070 fabHA_2; beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_3187 putative 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_0485 fabHA_1; beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_2175 fabHA_3; beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_0008 putative beta-ketoacyl-acyl-carrier-protein synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BFO_1314 Beta-ketoacyl synthase, C-terminal domain protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BFO_1091 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BFO_1132 Beta-ketoacyl synthase, C-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BFO_3030 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2174 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_1308 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2574 hypothetical protein K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D BFO_1369 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D BFO_1782 hypothetical protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D BFO_2519 putative enoyl-[acyl-carrier-protein] reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D BFO_0947 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_3175 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_0642 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:tfo00071]
D BFO_1489 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D BFO_0947 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_3175 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_0642 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis
D BFO_1090 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_1309 putative acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_1316 putative acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_3342 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:tfo00561]
D BFO_0006 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BFO_2284 putative undecaprenol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D BFO_2021 arylsulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D BFO_1388 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:tfo00564]
D BFO_3357 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D BFO_0006 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BFO_3031 putative glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D BFO_2284 putative undecaprenol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D BFO_2191 hypothetical protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D BFO_0550 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D BFO_2690 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D BFO_2505 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D BFO_1902 putative CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D BFO_1901 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D BFO_0913 HAD hydrolase, family IB K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D BFO_1832 putative cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D BFO_2939 CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism [PATH:tfo00565]
D BFO_2191 hypothetical protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:tfo00600]
D BFO_2803 O-Glycosyl hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D BFO_2966 O-Glycosyl hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D BFO_0450 putative beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_0300 putative beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2553 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_1381 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2968 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2207 BNR/Asp-box repeat protein K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D BFO_1388 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BFO_1923 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D BFO_2191 hypothetical protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D BFO_2191 hypothetical protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:tfo00592]
D BFO_2191 hypothetical protein K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:tfo00230]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_1593 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BFO_2784 hypothetical protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BFO_1185 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D BFO_1089 putative phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D BFO_2006 putative phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D BFO_1374 hypothetical protein K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D BFO_1114 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D BFO_2950 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D BFO_0120 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BFO_3350 putative phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BFO_1096 5'-nucleotidase, C-terminal domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D BFO_1914 5'-nucleotidase, C-terminal domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D BFO_1830 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D BFO_0294 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D BFO_2153 putative hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D BFO_2044 putative inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BFO_0944 rdgB; non-canonical purine NTP pyrophosphatase RdgB K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D BFO_0437 GMP synthase (glutamine-hydrolyzing), C-terminal domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BFO_0610 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D BFO_2503 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BFO_2081 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BFO_2082 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BFO_1030 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D BFO_1341 putative dGTPase K01129 dgt; dGTPase [EC:3.1.5.1]
D BFO_1468 putative GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BFO_0748 putative guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BFO_1434 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D BFO_1526 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BFO_2899 putative AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D BFO_2152 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:tfo00240]
D BFO_2112 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BFO_0847 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BFO_0846 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D BFO_2642 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D BFO_0020 dihydroorotate dehydrogenase 1B K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D BFO_0019 putative dihydroorotate oxidase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D BFO_0242 putative dihydroorotate dehydrogenase 2 K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D BFO_0471 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D BFO_1372 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D BFO_0967 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D BFO_3082 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D BFO_2753 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D BFO_0951 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D BFO_1153 phosphoribulokinase/uridine kinase family protein K00876 udk; uridine kinase [EC:2.7.1.48]
D BFO_1096 5'-nucleotidase, C-terminal domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D BFO_1914 5'-nucleotidase, C-terminal domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D BFO_1830 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D BFO_1364 putative purine nucleoside phosphorylase DeoD-type K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D BFO_1000 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D BFO_1537 putative cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D BFO_1030 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D BFO_2503 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BFO_2081 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BFO_2082 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BFO_0608 putative dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D BFO_1515 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BFO_0997 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D BFO_2016 sdh; serine 3-dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:tfo00250]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_0585 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D BFO_0184 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D BFO_2318 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D BFO_1056 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D BFO_3300 hydrolase, carbon-nitrogen family K13566 NIT2; omega-amidase [EC:3.5.1.3]
D BFO_1814 putative argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BFO_0473 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BFO_1526 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BFO_0120 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BFO_0847 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BFO_0846 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D BFO_1122 gdh; glutamate dehydrogenase, NAD-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BFO_1363 pruA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D BFO_2319 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BFO_2112 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BFO_1625 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D BFO_2784 hypothetical protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:tfo00260]
D BFO_0717 amino acid kinase family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BFO_3153 homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BFO_1138 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BFO_1924 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BFO_0709 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D BFO_3154 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D BFO_0195 D-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BFO_0193 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BFO_2016 sdh; serine 3-dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D BFO_2989 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D BFO_2867 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D BFO_2929 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_1113 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D BFO_1902 putative CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D BFO_1742 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D BFO_0802 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:tfo00270]
D BFO_0336 putative serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D BFO_0337 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D BFO_1777 putative cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BFO_0838 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BFO_1539 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BFO_2732 amidohydrolase family protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D BFO_1467 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D BFO_0631 putative modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BFO_1130 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D BFO_0717 amino acid kinase family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BFO_3153 homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BFO_1138 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BFO_0840 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BFO_3058 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BFO_3130 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_0515 lactate/malate dehydrogenase, NAD binding domain protein K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D BFO_1742 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D BFO_0195 D-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BFO_0193 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:tfo00280]
D BFO_3130 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_1489 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D BFO_0966 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D BFO_2746 mutA; methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_2747 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tfo00290]
D BFO_0823 HMGL-like protein K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D BFO_0820 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BFO_0822 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BFO_0824 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D BFO_3130 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BFO_0819 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:tfo00300]
D BFO_0717 amino acid kinase family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BFO_3153 homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BFO_1138 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BFO_0213 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BFO_1330 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D BFO_1812 putative acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BFO_1681 putative LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D BFO_0718 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D BFO_1811 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D BFO_0405 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BFO_1349 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BFO_2606 alr; alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
C 00310 Lysine degradation [PATH:tfo00310]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_1787 KamA family protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
C 00220 Arginine biosynthesis [PATH:tfo00220]
D BFO_1814 putative argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BFO_0473 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BFO_1625 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D BFO_2319 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BFO_2112 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BFO_1122 gdh; glutamate dehydrogenase, NAD-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_2826 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D BFO_1813 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D BFO_1812 putative acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BFO_1630 peptidase dimerization domain protein K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:tfo00330]
D BFO_2923 putative arginine decarboxylase, pyruvoyl-dependent K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D BFO_2324 hypothetical protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D BFO_2325 hydrolase, carbon-nitrogen family K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D BFO_2571 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D BFO_2497 nspC; carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127]
D BFO_2131 acetyltransferase, GNAT family K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D BFO_2738 proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D BFO_1363 pruA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:tfo00340]
D BFO_0733 phenylalanine and histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D BFO_0774 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D BFO_0766 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D BFO_0771 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D BFO_0770 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
C 00350 Tyrosine metabolism
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00360 Phenylalanine metabolism [PATH:tfo00360]
D BFO_0731 hypothetical protein K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00380 Tryptophan metabolism
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tfo00400]
D BFO_0757 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D BFO_1461 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D BFO_1759 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D BFO_0934 putative 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D BFO_2024 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D BFO_0129 glutamine amidotransferase, class I K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D BFO_0802 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D BFO_1680 putative 3-deoxy-7-phosphoheptulonate synthase K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D BFO_1679 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BFO_1682 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:tfo00410]
D BFO_0318 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D BFO_0319 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D BFO_1489 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00430 Taurine and hypotaurine metabolism [PATH:tfo00430]
D BFO_1346 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BFO_1345 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:tfo00450]
D BFO_1777 putative cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BFO_0838 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BFO_1687 cysteine desulfurase, SufS family K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D BFO_2691 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BFO_0925 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:tfo00460]
D BFO_0699 glycosyl hydrolase family 3, C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_2182 glycosyl hydrolase family 3, N-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_0184 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D BFO_2318 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D BFO_1924 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:tfo00470]
D BFO_2606 alr; alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D BFO_3290 D-ala D-ala ligase N-terminal domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BFO_1625 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D BFO_1448 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D BFO_0403 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BFO_1012 Tat pathway signal sequence domain protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D BFO_0718 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:tfo00480]
D BFO_1038 pepD_1; Xaa-His dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D BFO_2543 pepD_2; Xaa-His dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D BFO_0442 gnd; phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BFO_0458 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BFO_1338 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:tfo00511]
D BFO_2207 BNR/Asp-box repeat protein K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D BFO_0450 putative beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_0300 putative beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2553 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_1381 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_2968 glycosyl hydrolase family 2, sugar binding domain protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BFO_1923 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BFO_1182 F5/8 type C domain protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BFO_2737 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BFO_3101 putative lipoprotein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
D BFO_2803 O-Glycosyl hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D BFO_2966 O-Glycosyl hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis [PATH:tfo00540]
D BFO_1368 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D BFO_1369 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D BFO_1370 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D BFO_1428 Ser/Thr phosphatase family protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D BFO_1829 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D BFO_2844 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D BFO_1035 sugar isomerase, KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D BFO_0256 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D BFO_3324 putative 3-deoxy-manno-octulosonate-8-phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D BFO_2751 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D BFO_1931 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D BFO_0644 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D BFO_0800 arylsulfatase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D BFO_0900 heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tfo00541]
D BFO_0284 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BFO_0540 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BFO_0309 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BFO_2128 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BFO_2127 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D BFO_0668 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D BFO_0973 phosphomannose isomerase type I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BFO_0815 phosphomannose isomerase type I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BFO_1882 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D BFO_2944 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D BFO_3084 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D BFO_3081 fcl; GDP-L-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D BFO_1073 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D BFO_1065 neuC; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D BFO_1050 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D BFO_1051 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D BFO_0116 hypothetical protein K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D BFO_2943 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D BFO_1077 oxidoreductase, NAD-binding domain protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D BFO_0923 degT; pleiotropic regulatory protein DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D BFO_1995 bacterial transferase hexapeptide repeat protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D BFO_2566 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
C 00550 Peptidoglycan biosynthesis [PATH:tfo00550]
D BFO_0400 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BFO_0403 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BFO_0405 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BFO_3290 D-ala D-ala ligase N-terminal domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BFO_1349 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BFO_2606 alr; alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D BFO_1444 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BFO_1764 putative undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BFO_2876 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BFO_0404 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BFO_2724 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D BFO_3345 transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BFO_0468 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D BFO_3354 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D BFO_0406 penicillin-binding protein, transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BFO_1084 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:tfo00552]
D BFO_1764 putative undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BFO_2876 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BFO_2021 arylsulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D BFO_0548 LICD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:tfo00543]
D BFO_0673 putative alginate O-acetyltransferase AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI
D BFO_0336 putative serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:tfo00730]
D BFO_2035 ThiC family K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D BFO_0517 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BFO_2842 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D BFO_1340 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D BFO_2659 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BFO_1632 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D BFO_2152 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:tfo00740]
D BFO_1666 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D BFO_1441 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D BFO_3140 haloacid dehalogenase-like hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D BFO_0197 HAD hydrolase, family IA, variant 3 K21063 K21063; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D BFO_0602 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D BFO_0229 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D BFO_1629 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D BFO_0781 acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
C 00750 Vitamin B6 metabolism [PATH:tfo00750]
D BFO_0444 pdxB; 4-phosphoerythronate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D BFO_0193 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BFO_3119 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
C 00760 Nicotinate and nicotinamide metabolism [PATH:tfo00760]
D BFO_0585 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D BFO_0790 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D BFO_1993 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D BFO_2125 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D BFO_0294 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D BFO_1096 5'-nucleotidase, C-terminal domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D BFO_1914 5'-nucleotidase, C-terminal domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D BFO_1830 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D BFO_0609 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D BFO_2320 nadE; NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D BFO_0907 npdA; NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D BFO_3120 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:tfo00770]
D BFO_0221 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D BFO_0319 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D BFO_2259 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D BFO_2534 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D BFO_1081 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D BFO_0179 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D BFO_2910 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D BFO_3130 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BFO_0318 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:tfo00780]
D BFO_0008 putative beta-ketoacyl-acyl-carrier-protein synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BFO_1314 Beta-ketoacyl synthase, C-terminal domain protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BFO_1091 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BFO_1132 Beta-ketoacyl synthase, C-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BFO_3030 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2174 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_1308 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2574 hypothetical protein K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D BFO_1782 hypothetical protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D BFO_2728 putative 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D BFO_0654 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:tfo00785]
D BFO_2725 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D BFO_1660 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_2867 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D BFO_2929 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BFO_1113 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:tfo00790]
D BFO_2615 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D BFO_2659 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BFO_2500 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D BFO_1767 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D BFO_1348 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D BFO_0996 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BFO_2521 folC; bifunctional protein FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D BFO_1666 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D BFO_0130 para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D BFO_0131 hypothetical protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D BFO_2523 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D BFO_2150 queF; preQ(1) synthase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:tfo00670]
D BFO_0996 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BFO_3051 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D BFO_0773 putative methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D BFO_1924 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D BFO_1089 putative phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D BFO_3350 putative phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BFO_0770 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
D BFO_1736 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BFO_2929 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D BFO_0838 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D BFO_0997 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D BFO_2558 methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D BFO_0606 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:tfo00860]
D BFO_1930 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BFO_0583 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D BFO_2214 putative sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D BFO_1395 putative precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D BFO_2783 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D BFO_2781 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D BFO_0026 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D BFO_2075 CobN/magnesium chelatase domain protein K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D BFO_1320 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D BFO_2779 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D BFO_1844 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D BFO_1843 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D BFO_0479 putative bifunctional adenosylcobalamin biosynthesis protein CobU K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D BFO_0902 cobS; cobalamin-5-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D BFO_0903 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D BFO_0901 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D BFO_1845 putative threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tfo00130]
D BFO_2949 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D BFO_3201 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D BFO_1951 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D BFO_3200 menD_2; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D BFO_1952 menD_1; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D BFO_3197 O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D BFO_1955 O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D BFO_3199 menB_2; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D BFO_1953 menB_1; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D BFO_3106 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:tfo00900]
D BFO_0517 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BFO_2029 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D BFO_2313 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D BFO_2828 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D BFO_1848 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D BFO_1115 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D BFO_0949 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D BFO_0954 polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D BFO_1002 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D BFO_1444 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D BFO_0412 Transketolase, thiamine pyrophosphate binding domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:tfo00523]
D BFO_0309 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BFO_2128 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BFO_2127 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D BFO_0668 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D BFO_3201 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D BFO_1951 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D BFO_2128 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:tfo00946]
D BFO_0699 glycosyl hydrolase family 3, C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_2182 glycosyl hydrolase family 3, N-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_0711 alpha-L-rhamnosidase N-terminal domain protein K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:tfo00261]
D BFO_0717 amino acid kinase family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BFO_3153 homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D BFO_1138 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BFO_0213 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BFO_1330 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:tfo00521]
D BFO_0991 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BFO_2149 pgcA; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BFO_0722 Tat pathway signal sequence domain protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D BFO_0309 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BFO_2128 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BFO_2127 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D BFO_0668 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D BFO_0991 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:tfo00525]
D BFO_0309 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BFO_2128 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:tfo00401]
D BFO_1679 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D BFO_0129 glutamine amidotransferase, class I K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D BFO_3342 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BFO_3030 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2174 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_1308 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_1782 hypothetical protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D BFO_1090 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_1309 putative acyl carrier protein K02078 acpP; acyl carrier protein
D BFO_1316 putative acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:tfo00999]
D BFO_1539 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BFO_0699 glycosyl hydrolase family 3, C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BFO_2182 glycosyl hydrolase family 3, N-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D BFO_0962 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D BFO_0963 putative glutaconyl-CoA decarboxylase subunit gamma K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:tfo03020]
D BFO_1947 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BFO_1948 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BFO_1573 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:tfo03010]
D BFO_1780 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D BFO_2096 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D BFO_1552 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BFO_1572 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D BFO_1563 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BFO_3360 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BFO_1542 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BFO_1560 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BFO_2095 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BFO_1544 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BFO_1571 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BFO_1541 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D BFO_1570 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BFO_1559 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D BFO_1786 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D BFO_1728 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BFO_1555 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BFO_3361 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BFO_1550 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BFO_1712 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D BFO_1934 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D BFO_1944 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BFO_1548 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BFO_1545 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BFO_1546 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BFO_1558 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BFO_1561 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BFO_1946 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BFO_3362 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BFO_1945 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BFO_1943 Ribosomal protein L11, RNA binding domain protein K02867 RP-L11; large subunit ribosomal protein L11
D BFO_2094 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BFO_1556 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BFO_1565 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BFO_1553 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BFO_1574 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BFO_1562 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BFO_0003 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D BFO_2538 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D BFO_1883 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BFO_1551 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BFO_1547 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BFO_1557 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BFO_3087 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D BFO_1884 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BFO_0287 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BFO_1554 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BFO_1564 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BFO_3328 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BFO_0486 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BFO_0286 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BFO_3287 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D BFO_2539 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D BFO_1569 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BFO_0641 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BFO_3321 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BFO_3317 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BFO_0637 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BFO_0636 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BFO_3316 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:tfo00970]
D BFO_1119 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BFO_0639 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BFO_3319 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BFO_0825 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_2322 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_2135 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_1925 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_3012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BFO_3281 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BFO_2126 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BFO_2509 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BFO_0480 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BFO_1713 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BFO_1711 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BFO_0248 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_2825 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_0600 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_0290 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_2199 tRNA-His K14226 tRNA-His; tRNA His
D BFO_0640 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BFO_3320 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BFO_0249 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_0288 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_1351 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_1974 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_0289 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_1085 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BFO_2004 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BFO_0714 tRNA-Met K14230 tRNA-Met; tRNA Met
D BFO_0734 tRNA-Met K14230 tRNA-Met; tRNA Met
D BFO_2177 tRNA-Met K14230 tRNA-Met; tRNA Met
D BFO_0126 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BFO_0416 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BFO_0295 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BFO_2250 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BFO_2740 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_1354 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_0956 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_2531 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_1938 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_1647 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_1937 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_2931 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_1940 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BFO_0601 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BFO_0647 tRNA-Val K14237 tRNA-Val; tRNA Val
D BFO_1930 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BFO_2841 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D BFO_0755 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BFO_2694 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BFO_0118 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D BFO_1215 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BFO_2541 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BFO_1886 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BFO_1307 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BFO_0925 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BFO_1736 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BFO_1643 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BFO_0942 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BFO_2936 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BFO_3356 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BFO_1640 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BFO_0220 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BFO_1528 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BFO_1743 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BFO_1876 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BFO_0481 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BFO_0512 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:tfo03060]
D BFO_1566 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D BFO_1941 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BFO_3024 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BFO_0181 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D BFO_2752 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BFO_3042 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BFO_3050 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BFO_2888 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BFO_3343 twin arginine-targeting protein, translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D BFO_3344 putative twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D BFO_3099 lepB_5; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_0347 lepB_1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_0374 lepB_2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_1328 lepB_3; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_1329 lepB_4; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_2934 putative signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system
C 03050 Proteasome
C 03018 RNA degradation [PATH:tfo03018]
D BFO_2068 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BFO_1040 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BFO_2829 putative DEAD-box ATP-dependent RNA helicase CshA K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D BFO_0707 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D BFO_0926 putative cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D BFO_1500 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BFO_1731 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BFO_2698 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BFO_2123 YmdA/YtgF family protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_0677 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D BFO_1437 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BFO_2020 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BFO_1469 tRNA nucleotidyltransferase/poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:tfo03030]
D BFO_2533 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_2597 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_1723 putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BFO_2557 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BFO_2898 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BFO_2532 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BFO_3346 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BFO_3061 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BFO_2907 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BFO_0476 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BFO_1691 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BFO_1001 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BFO_0211 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:tfo03410]
D BFO_1744 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BFO_2136 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BFO_2906 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BFO_1976 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D BFO_1001 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BFO_1733 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BFO_0211 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:tfo03420]
D BFO_0251 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BFO_1037 uvrA_1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D BFO_2653 uvrA_2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D BFO_0536 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D BFO_1100 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D BFO_2498 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BFO_1001 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BFO_0211 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:tfo03430]
D BFO_0705 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D BFO_0240 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D BFO_1494 DNA mismatch repair protein, C-terminal domain protein K03572 mutL; DNA mismatch repair protein MutL
D BFO_2498 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BFO_2315 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BFO_2314 exodeoxyribonuclease VII, small subunit family protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BFO_1733 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BFO_2907 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BFO_1723 putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BFO_2532 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BFO_2898 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BFO_2557 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BFO_2533 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_2597 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_0211 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:tfo03440]
D BFO_1733 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BFO_2907 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BFO_0604 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D BFO_1927 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BFO_2129 recR; recombination protein RecR K06187 recR; recombination protein RecR
D BFO_2569 recA; RecA protein K03553 recA; recombination protein RecA
D BFO_1001 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BFO_1897 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D BFO_0380 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BFO_1121 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BFO_1055 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_1241 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_3202 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_1511 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_1723 putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BFO_2532 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BFO_2898 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BFO_2557 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BFO_2533 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_2597 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_3158 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
D BFO_1007 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BFO_1659 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:tfo02010]
D BFO_1576 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D BFO_1575 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D BFO_1452 efflux ABC transporter, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D BFO_0651 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein
D BFO_1451 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D BFO_3052 efflux ABC transporter, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D BFO_0786 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D BFO_1667 permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D BFO_2276 permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D BFO_1493 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D BFO_1762 efflux ABC transporter, permease protein K09811 ftsX; cell division transport system permease protein
D BFO_0716 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BFO_0124 ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D BFO_1622 ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D BFO_0125 ABC transporter, ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D BFO_1624 ABC transporter, ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D BFO_3100 putative lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D BFO_1287 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:tfo03070]
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1941 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BFO_3024 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BFO_1566 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D BFO_0181 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D BFO_2752 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BFO_3042 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BFO_2888 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BFO_3050 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BFO_3343 twin arginine-targeting protein, translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D BFO_3344 putative twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:tfo02020]
D BFO_1221 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_2007 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_0894 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_2659 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BFO_0781 acid phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D BFO_0430 degP; peptidase Do K04771 degP; serine protease Do [EC:3.4.21.107]
D BFO_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BFO_1449 putative D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BFO_0030 TonB-linked outer membrane protein, SusC/RagA family K19611 fepA; ferric enterobactin receptor
D BFO_0096 lanthionine synthetase C-like protein K20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]
D BFO_0048 lanthionine synthetase C-like protein K20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]
D BFO_0105 lanthionine synthetase C-like protein K20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]
D BFO_3002 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D BFO_1236 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D BFO_2319 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BFO_1237 Sigma-54 interaction domain protein K07713 zraR; two-component system, NtrC family, response regulator HydG
D BFO_1112 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D BFO_1625 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D BFO_1792 cydA; cytochrome D ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D BFO_1791 putative cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_0552 polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D BFO_0551 chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D BFO_1065 neuC; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D BFO_1050 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D BFO_1051 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D BFO_0028 polysaccharide deacetylase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D BFO_2618 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1522 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_0218 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_3004 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1400 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1458 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_0969 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_2799 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_2916 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_0189 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_0496 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_0587 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_0889 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_1402 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_1457 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_1714 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
D BFO_2012 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:tfo02024]
D BFO_0129 glutamine amidotransferase, class I K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D BFO_0947 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_3175 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_0642 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_1441 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D BFO_1287 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D BFO_1286 auxiliary transport protein, membrane fusion protein (MFP) family protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D BFO_2752 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BFO_1941 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BFO_3024 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BFO_1566 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D BFO_0181 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D BFO_3042 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BFO_2888 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BFO_3050 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BFO_0096 lanthionine synthetase C-like protein K20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]
D BFO_0048 lanthionine synthetase C-like protein K20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]
D BFO_0105 lanthionine synthetase C-like protein K20484 lanC; class I lanthipeptide synthase [EC:3.13.2.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:tfo02040]
D BFO_0428 putative RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D BFO_1112 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D BFO_2068 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:tfo04980]
D BFO_1320 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D BFO_2779 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D BFO_0992 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D BFO_2746 mutA; methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_2747 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D BFO_0838 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:tfo01501]
D BFO_0039 putative membrane protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D BFO_0233 TonB-dependent receptor K02172 blaR1; bla regulator protein blaR1
D BFO_0333 TonB-dependent receptor K02172 blaR1; bla regulator protein blaR1
D BFO_0232 transcriptional regulator, BlaI/MecI/CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BFO_0332 transcriptional regulator, BlaI/MecI/CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_3345 transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BFO_3354 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D BFO_0406 penicillin-binding protein, transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:tfo01502]
D BFO_1449 putative D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BFO_3290 D-ala D-ala ligase N-terminal domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BFO_2606 alr; alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D BFO_1349 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BFO_0404 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tfo01503]
D BFO_3363 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D BFO_0430 degP; peptidase Do K04771 degP; serine protease Do [EC:3.4.21.107]
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1368 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:tfo01000]
C 01001 Protein kinases [BR:tfo01001]
D BFO_2981 kinase domain protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BFO_3288 PASTA domain protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BFO_0530 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0532 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0533 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0597 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0551 chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D BFO_1221 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_2007 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_0894 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_1236 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D BFO_3002 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D BFO_0147 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D BFO_2853 response regulator receiver domain protein K19694 chiS; two-component system, sensor histidine kinase ChiS
C 01009 Protein phosphatases and associated proteins [BR:tfo01009]
D BFO_1130 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_1739 Hsp90 protein K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:tfo01002]
D BFO_2934 putative signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D BFO_0437 GMP synthase (glutamine-hydrolyzing), C-terminal domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BFO_1287 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D BFO_2784 hypothetical protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BFO_1056 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D BFO_3115 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D BFO_1603 peptidase, C69 family K08659 pepDA; dipeptidase [EC:3.4.-.-]
D BFO_0185 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D BFO_1873 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D BFO_0703 thermolysin metallopeptidase, catalytic domain protein K01400 nprE; bacillolysin [EC:3.4.24.28]
D BFO_0011 peptidase family M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D BFO_1449 putative D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BFO_1745 peptidase M16 inactive domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D BFO_2930 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D BFO_1038 pepD_1; Xaa-His dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D BFO_2543 pepD_2; Xaa-His dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D BFO_1567 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D BFO_2955 aminopeptidase P, N-terminal domain protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D BFO_2507 hflB; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BFO_0225 peptidase, M48 family K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D BFO_1524 peptidase family M49 K01277 DPP3; dipeptidyl-peptidase III [EC:3.4.14.4]
D BFO_2027 putative RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D BFO_2238 putative membrane protein K16922 yydH; putative peptide zinc metalloprotease protein
D BFO_0233 TonB-dependent receptor K02172 blaR1; bla regulator protein blaR1
D BFO_0333 TonB-dependent receptor K02172 blaR1; bla regulator protein blaR1
D BFO_0430 degP; peptidase Do K04771 degP; serine protease Do [EC:3.4.21.107]
D BFO_1179 hypothetical protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D BFO_2679 hypothetical protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D BFO_3286 hypothetical protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D BFO_2851 peptidase, S9A/B/C family, catalytic domain protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D BFO_1007 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BFO_1659 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BFO_3078 ptrB; protease 2 K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D BFO_1084 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BFO_1502 clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D BFO_3077 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D BFO_3099 lepB_5; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_0347 lepB_1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_0374 lepB_2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_1328 lepB_3; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_1329 lepB_4; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BFO_1080 peptidase, S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BFO_0607 peptidase, S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BFO_3010 peptidase, S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BFO_0222 peptidase, S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BFO_2023 peptidase, S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D BFO_3297 WD40-like protein K08676 tri; tricorn protease [EC:3.4.21.-]
D BFO_2845 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D BFO_2770 peptidase, S54 family K07059 K07059; rhomboid family protein
D BFO_2771 peptidase, S54 family K07059 K07059; rhomboid family protein
D BFO_1352 prtC; collagenase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D BFO_0839 peptidase, U32 family K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D BFO_0446 TldD/PmbA family protein K03592 pmbA; PmbA protein
D BFO_0448 Tat pathway signal sequence domain protein K03568 tldD; TldD protein
D BFO_0469 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:tfo01003]
D BFO_2643 glycosyltransferase, group 2 family protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D BFO_3098 Alg9-like mannosyltransferase family protein K05286 PIGB; GPI mannosyltransferase 3 [EC:2.4.1.-]
D BFO_0170 glycosyltransferase, group 1 family protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D BFO_0320 starch synthase catalytic domain protein K00703 glgA; starch synthase [EC:2.4.1.21]
D BFO_2724 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D BFO_0468 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D BFO_3345 transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:tfo01005]
D BFO_1368 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D BFO_1829 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D BFO_1369 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D BFO_1370 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D BFO_1428 Ser/Thr phosphatase family protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D BFO_2844 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D BFO_0644 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D BFO_1931 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D BFO_0256 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D BFO_2751 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D BFO_3324 putative 3-deoxy-manno-octulosonate-8-phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D BFO_1035 sugar isomerase, KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D BFO_0900 heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D BFO_0800 arylsulfatase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D BFO_1401 putative bactoprenol glucosyl transferase-like protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D BFO_2159 glycosyltransferase, group 2 family protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tfo01011]
D BFO_0400 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BFO_0403 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BFO_0405 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BFO_2606 alr; alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D BFO_3290 D-ala D-ala ligase N-terminal domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BFO_1448 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D BFO_0404 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BFO_1764 putative undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BFO_2876 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BFO_3345 transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D BFO_0468 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D BFO_3354 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D BFO_0406 penicillin-binding protein, transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BFO_1084 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BFO_2724 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D BFO_1449 putative D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BFO_0747 LysM domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D BFO_2652 transglycosylase SLT domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D BFO_2973 transglycosylase SLT domain protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D BFO_2830 hypothetical protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D BFO_2893 YceG family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D BFO_3363 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:tfo01004]
D BFO_3342 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D BFO_1070 fabHA_2; beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_3187 putative 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_0485 fabHA_1; beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_2175 fabHA_3; beta-ketoacyl-acyl-carrier-protein synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D BFO_0008 putative beta-ketoacyl-acyl-carrier-protein synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BFO_1314 Beta-ketoacyl synthase, C-terminal domain protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D BFO_1091 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BFO_1132 Beta-ketoacyl synthase, C-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D BFO_3030 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2174 fabG_2; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_1308 fabG_1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BFO_2574 hypothetical protein K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D BFO_1369 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D BFO_1782 hypothetical protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D BFO_2519 putative enoyl-[acyl-carrier-protein] reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D BFO_0175 AMP-binding enzyme K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D BFO_0988 CoA binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D BFO_0947 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_3175 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_0642 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_0006 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:tfo01006]
D BFO_0954 polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D BFO_1002 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D BFO_1444 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BFO_0257 miaA_1; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BFO_1366 miaA_2; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BFO_3106 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D BFO_0914 prenyltransferase, UbiA family K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:tfo01007]
D BFO_1930 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BFO_2841 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D BFO_0481 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BFO_0512 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BFO_1307 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BFO_1640 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BFO_0925 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BFO_2936 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BFO_1643 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BFO_0942 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BFO_3356 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BFO_2694 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BFO_0118 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D BFO_1528 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BFO_1215 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BFO_1886 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BFO_0220 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BFO_2541 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BFO_0755 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BFO_1743 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BFO_1876 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BFO_3053 aminotransferase, class I/II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1665 aspC; aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BFO_1681 putative LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D BFO_2989 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D BFO_2728 putative 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D BFO_1777 putative cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BFO_1812 putative acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BFO_3130 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BFO_0193 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BFO_0923 degT; pleiotropic regulatory protein DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D BFO_1073 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:tfo00194]
D BFO_0663 ATP synthase, delta/epsilon subunit, beta-sandwich domain protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BFO_0664 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BFO_0656 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BFO_0657 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BFO_0658 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BFO_0659 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BFO_0660 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BFO_0661 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:tfo03000]
D BFO_0631 putative modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BFO_2793 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D BFO_3257 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D BFO_1903 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D BFO_2280 LysR substrate binding domain protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BFO_2260 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D BFO_0961 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D BFO_1752 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BFO_1525 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BFO_1721 transcriptional regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D BFO_2549 cyclic nucleotide-binding domain protein K21556 malR; CRP/FNR family transcriptional regulator, polysaccharide utilization system transcription regulator
D BFO_0650 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D BFO_0232 transcriptional regulator, BlaI/MecI/CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BFO_0332 transcriptional regulator, BlaI/MecI/CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BFO_0654 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BFO_2253 DNA-binding helix-turn-helix protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BFO_3292 CoA binding domain protein K01926 rex; redox-sensing transcriptional repressor
D BFO_0745 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BFO_2688 transcription termination/antitermination factor NusG K05785 rfaH; transcriptional antiterminator RfaH
D BFO_1816 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BFO_3057 hypothetical protein K07735 algH; putative transcriptional regulator
D BFO_2935 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:tfo03021]
D BFO_1573 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BFO_1947 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BFO_1948 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BFO_0428 putative RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D BFO_1509 Sigma-70 region 2 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BFO_0919 Sigma-70 region 2 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BFO_1778 Sigma-70 region 2 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BFO_2618 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1522 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_0218 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_3004 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1400 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1458 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D BFO_1112 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D BFO_1671 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D BFO_0182 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D BFO_1942 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D BFO_2935 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BFO_1033 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D BFO_2698 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:tfo03019]
D BFO_2903 putative ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D BFO_1092 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BFO_2123 YmdA/YtgF family protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D BFO_0707 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D BFO_2829 putative DEAD-box ATP-dependent RNA helicase CshA K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D BFO_0926 putative cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D BFO_1500 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BFO_1731 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BFO_2068 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BFO_1040 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BFO_2698 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BFO_1157 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D BFO_0677 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D BFO_1437 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BFO_2020 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BFO_1469 tRNA nucleotidyltransferase/poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:tfo03011]
D BFO_1780 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D BFO_2096 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D BFO_1552 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BFO_1572 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D BFO_1563 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BFO_3360 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BFO_1542 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BFO_1560 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BFO_2095 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BFO_1544 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BFO_1571 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BFO_1541 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D BFO_1570 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BFO_1559 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D BFO_1786 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D BFO_1728 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BFO_1555 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BFO_3361 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BFO_1550 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BFO_1712 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D BFO_1934 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D BFO_1944 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BFO_1548 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BFO_1545 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BFO_1546 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BFO_1558 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BFO_1561 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BFO_3362 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BFO_1945 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BFO_1943 Ribosomal protein L11, RNA binding domain protein K02867 RP-L11; large subunit ribosomal protein L11
D BFO_1946 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BFO_2094 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BFO_1556 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BFO_1565 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BFO_1553 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BFO_1574 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BFO_1562 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BFO_0003 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D BFO_2538 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D BFO_1883 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BFO_1551 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BFO_1547 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BFO_1557 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BFO_1884 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BFO_0287 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BFO_1554 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BFO_1564 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BFO_3328 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BFO_0486 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BFO_0286 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BFO_3287 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D BFO_2539 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D BFO_1569 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BFO_3087 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D BFO_0636 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BFO_3316 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BFO_0641 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BFO_3321 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BFO_3317 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BFO_0637 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:tfo03009]
D BFO_1092 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BFO_0484 era; ribosome biogenesis GTPase Era K03595 era; GTPase
D BFO_2151 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D BFO_2935 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BFO_1671 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D BFO_0182 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D BFO_1942 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D BFO_1391 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BFO_1831 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BFO_3149 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BFO_2869 rmsG; 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BFO_0408 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BFO_1838 S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BFO_1996 tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BFO_2537 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BFO_1991 putative rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BFO_3339 putative 23S rRNA m5C1962 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BFO_1008 THUMP domain protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D BFO_3035 rlmN; 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BFO_2974 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BFO_0119 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BFO_3289 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BFO_0137 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BFO_2172 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BFO_0245 acetyltransferase, GNAT family K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D BFO_2031 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D BFO_2887 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D BFO_0266 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D BFO_2903 putative ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D BFO_3046 RNAse H domain protein, YqgF family K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D BFO_0926 putative cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D BFO_1340 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D BFO_0482 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D BFO_1905 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D BFO_1804 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BFO_1468 putative GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BFO_0748 putative guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BFO_1453 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D BFO_1670 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D BFO_2508 iojap-like protein K09710 ybeB; ribosome-associated protein
D BFO_1936 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D BFO_1414 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D BFO_0487 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:tfo03016]
D BFO_1109 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D BFO_1930 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BFO_0220 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BFO_2936 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BFO_0942 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BFO_0925 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BFO_2841 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D BFO_1640 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BFO_3356 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BFO_2694 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BFO_0755 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BFO_0118 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D BFO_1215 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BFO_2541 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BFO_1886 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BFO_1307 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BFO_1643 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BFO_1528 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BFO_1743 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BFO_1876 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BFO_0481 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BFO_0512 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BFO_1101 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D BFO_1032 histidine triad domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BFO_3007 putative tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D BFO_0025 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D BFO_1765 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D BFO_1595 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K21027 TRMU; tRNA-5-taurinomethyluridine 2-sulfurtransferase [EC:2.8.1.14]
D BFO_1804 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BFO_0257 miaA_1; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BFO_1366 miaA_2; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BFO_0534 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D BFO_1099 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D BFO_0582 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D BFO_3150 rnpB; Bacterial RNase P class A K01978 rnpB; M1 RNA
D BFO_3348 ATP-binding cassette protein, ChvD family K06020 ettA; energy-dependent translational throttle protein EttA
D BFO_0293 YbaK/proline--tRNA ligase associated domain protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D BFO_1871 cytidine and deoxycytidylate deaminase zinc-binding region K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D BFO_1137 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D BFO_0451 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D BFO_0643 yqeV; tRNA methylthiotransferase YqeV K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D BFO_1874 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D BFO_2729 methyltransferase small domain protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D BFO_0828 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family
D BFO_1766 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D BFO_1303 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D BFO_2523 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D BFO_2150 queF; preQ(1) synthase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D BFO_2323 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D BFO_2274 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D BFO_2697 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D BFO_2190 yeaZ; universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D BFO_0842 putative glycoprotease GCP K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D BFO_0924 hydrolase, P-loop family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D BFO_2283 ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D BFO_0707 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D BFO_1040 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:tfo03012]
D BFO_1899 putative translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1
D BFO_1672 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D BFO_2540 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D BFO_2749 prevent-host-death family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D BFO_2097 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D BFO_1939 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D BFO_1581 putative translation elongation factor G K02355 fusA; elongation factor G
D BFO_1543 fusA; translation elongation factor G K02355 fusA; elongation factor G
D BFO_1373 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D BFO_1339 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D BFO_1440 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D BFO_3088 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D BFO_1568 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D BFO_1431 efp; translation elongation factor P K02356 efp; elongation factor P
D BFO_0594 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D BFO_0667 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:tfo03110]
D BFO_2189 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D BFO_1740 clpC; negative regulator of genetic competence ClpC/MecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D BFO_1501 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D BFO_1739 Hsp90 protein K04079 HSP90A; molecular chaperone HtpG
D BFO_0677 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D BFO_1437 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BFO_0237 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D BFO_0238 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D BFO_1685 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D BFO_3089 S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D BFO_1436 groS; chaperonin GroS K04078 groES; chaperonin GroES
D BFO_0138 putative 10 kDa chaperonin K04078 groES; chaperonin GroES
D BFO_0430 degP; peptidase Do K04771 degP; serine protease Do [EC:3.4.21.107]
D BFO_2507 hflB; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BFO_0661 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BFO_1923 glycosyl hydrolase family 20, catalytic domain protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BFO_3036 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D BFO_2625 fkpB_2; peptidyl-prolyl cis-trans isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D BFO_2624 fkpB_1; peptidyl-prolyl cis-trans isomerase, FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D BFO_2626 mip; outer membrane protein MIP K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D BFO_2022 slyD; peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D BFO_1497 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D BFO_1499 putative peptidylprolyl isomerase PrsA1 K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D BFO_1722 trxA_1; thioredoxin K03671 TXN; thioredoxin
D BFO_1753 trxA_3; thioredoxin K03671 TXN; thioredoxin
D BFO_1729 trxA_2; thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:tfo04131]
D BFO_3131 SPFH/Band 7/PHB domain protein K07192 FLOT; flotillin
D BFO_0261 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BFO_1460 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BFO_1739 Hsp90 protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:tfo03051]
D BFO_1739 Hsp90 protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:tfo03032]
D BFO_0476 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BFO_0631 putative modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BFO_2499 putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_2886 hup_2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_2904 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BFO_3346 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BFO_3061 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BFO_2907 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BFO_1723 putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BFO_2532 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BFO_2898 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BFO_2557 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BFO_2533 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_2597 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_1691 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BFO_1001 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BFO_0211 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BFO_2872 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BFO_1695 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BFO_0740 DNA gyrase/topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D BFO_1082 putative DNA gyrase, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D BFO_1641 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D BFO_1230 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D BFO_1535 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:tfo03036]
D BFO_0631 putative modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BFO_1092 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BFO_3131 SPFH/Band 7/PHB domain protein K07192 FLOT; flotillin
D BFO_2499 putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_2886 hup_2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_2904 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BFO_2281 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein
D BFO_0398 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D BFO_0716 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BFO_0406 penicillin-binding protein, transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BFO_2693 putative stage III sporulation protein E K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BFO_0399 hypothetical protein K03589 ftsQ; cell division protein FtsQ
D BFO_0402 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D BFO_1762 efflux ABC transporter, permease protein K09811 ftsX; cell division transport system permease protein
D BFO_0397 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BFO_3363 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D BFO_3351 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D BFO_3352 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D BFO_3355 putative rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D BFO_0744 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D BFO_0745 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BFO_0740 DNA gyrase/topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D BFO_1082 putative DNA gyrase, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D BFO_1099 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D BFO_2869 rmsG; 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BFO_1935 site-specific recombinase, phage integrase family K03733 xerC; integrase/recombinase XerC
D BFO_1389 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D BFO_0634 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D BFO_1958 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D BFO_3008 mrp family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BFO_2335 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D BFO_1889 HTH domain protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D BFO_1052 toxin-antitoxin system, toxin component, Fic family K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D BFO_0508 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:tfo03400]
D BFO_0162 ogt; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BFO_2136 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BFO_2906 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BFO_1744 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BFO_1515 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BFO_1976 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D BFO_1733 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D BFO_0211 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BFO_1001 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D BFO_1037 uvrA_1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D BFO_2653 uvrA_2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D BFO_0536 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D BFO_1100 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D BFO_2498 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BFO_1947 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BFO_1948 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BFO_1573 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BFO_0251 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BFO_0705 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D BFO_0240 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D BFO_1494 DNA mismatch repair protein, C-terminal domain protein K03572 mutL; DNA mismatch repair protein MutL
D BFO_2315 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BFO_2314 exodeoxyribonuclease VII, small subunit family protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BFO_1723 putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BFO_2532 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BFO_2898 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BFO_2557 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BFO_2533 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_2597 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BFO_2907 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BFO_0623 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D BFO_2569 recA; RecA protein K03553 recA; recombination protein RecA
D BFO_1897 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D BFO_0380 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BFO_1121 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BFO_3158 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D BFO_0990 putative nuclease sbcCD, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
D BFO_0989 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D BFO_3330 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D BFO_0604 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D BFO_1055 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_1241 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_3202 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_1511 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BFO_1927 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BFO_2129 recR; recombination protein RecR K06187 recR; recombination protein RecR
D BFO_2536 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BFO_2343 cas1; CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype K15342 cas1; CRISP-associated protein Cas1
D BFO_1949 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D BFO_2872 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BFO_1695 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BFO_1641 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D BFO_2499 putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_2886 hup_2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_2904 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BFO_1500 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BFO_1731 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BFO_3252 DNA-damage-inducible protein D family protein K14623 dinD; DNA-damage-inducible protein D
D BFO_1439 recX; regulatory protein RecX K03565 recX; regulatory protein
D BFO_2503 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BFO_2081 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BFO_2082 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BFO_3093 DHHA1 domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:tfo03029]
D BFO_1672 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D BFO_2540 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D BFO_2097 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D BFO_1939 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D BFO_1581 putative translation elongation factor G K02355 fusA; elongation factor G
D BFO_1543 fusA; translation elongation factor G K02355 fusA; elongation factor G
D BFO_0484 era; ribosome biogenesis GTPase Era K03595 era; GTPase
D BFO_0481 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BFO_0942 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BFO_2694 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BFO_1215 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BFO_1640 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BFO_2907 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BFO_1445 outer membrane protein, OMP85 family K07277 SAM50; outer membrane protein insertion porin family
D BFO_0677 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D BFO_0238 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D BFO_1437 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BFO_1436 groS; chaperonin GroS K04078 groES; chaperonin GroES
D BFO_0138 putative 10 kDa chaperonin K04078 groES; chaperonin GroES
D BFO_0237 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D BFO_3008 mrp family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BFO_2752 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BFO_1739 Hsp90 protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:tfo02000]
D BFO_0124 ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D BFO_1622 ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D BFO_0125 ABC transporter, ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D BFO_1624 ABC transporter, ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D BFO_3100 putative lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D BFO_0102 peptidase, C39 family K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BFO_0111 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BFO_0860 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BFO_1697 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BFO_1426 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BFO_0088 peptidase, C39 family K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D BFO_1287 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D BFO_2043 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D BFO_1576 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D BFO_1575 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D BFO_3285 putative lipoprotein K25034 btuF; cobalamin transport system substrate-binding protein
D BFO_0014 putative lipoprotein K25034 btuF; cobalamin transport system substrate-binding protein
D BFO_1892 putative vitamin B12 import system permease protein BtuC K25027 btuC; cobalamin transport system permease protein
D BFO_0015 iron chelate uptake ABC transporter, FeCT family, permease protein K25027 btuC; cobalamin transport system permease protein
D BFO_0016 ABC transporter, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D BFO_1452 efflux ABC transporter, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D BFO_0651 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein
D BFO_1451 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D BFO_1667 permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D BFO_2276 permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D BFO_1493 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D BFO_2266 ABC-2 type transporter K25180 ybhR; drug efflux transport system permease protein
D BFO_2265 ABC-2 type transporter K25181 ybhS; drug efflux transport system permease protein
D BFO_2263 ABC transporter, ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein
D BFO_2264 ABC transporter, ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein
D BFO_2262 hypothetical protein K25183 ybhG; membrane fusion protein YbhG
D BFO_3052 efflux ABC transporter, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein
D BFO_0786 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D BFO_1762 efflux ABC transporter, permease protein K09811 ftsX; cell division transport system permease protein
D BFO_0716 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BFO_3105 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D BFO_3059 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D BFO_1827 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D BFO_3104 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D BFO_1826 putative ABC transporter, ATP-binding protein SagG K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BFO_2098 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BFO_3060 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BFO_0814 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BFO_0153 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0462 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0463 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0002 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_2299 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0151 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0149 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0866 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BFO_0152 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BFO_0464 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BFO_1675 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D BFO_2560 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D BFO_0317 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D BFO_0443 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D BFO_3258 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D BFO_0228 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D BFO_2848 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D BFO_2808 MFS transporter, SP family K08138 xylE; MFS transporter, SP family, xylose:H+ symportor
D BFO_0307 fucP; L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D BFO_1772 transporter, major facilitator family protein K02429 fucP; MFS transporter, FHS family, L-fucose permease
D BFO_2040 transporter, major facilitator family protein K02429 fucP; MFS transporter, FHS family, L-fucose permease
D BFO_1819 nupG; nucleoside permease NupG K11537 xapB; MFS transporter, NHS family, xanthosine permease
D BFO_2295 transporter, major facilitator family protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D BFO_2204 transporter, major facilitator family protein K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D BFO_0039 putative membrane protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D BFO_2880 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D BFO_2881 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D BFO_0143 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D BFO_2282 transporter, small conductance mechanosensitive ion channel MscS family protein K16052 ynaI; MscS family membrane protein
D BFO_0957 transporter, MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D BFO_3118 transporter, MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D BFO_3117 transport energizing protein, ExbD/TolR family K03559 exbD; biopolymer transport protein ExbD
D BFO_1392 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D BFO_1741 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BFO_2908 gldE; gliding motility-associated protein GldE K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BFO_0782 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP
D BFO_0311 outer membrane protein 40 K03286 TC.OOP; OmpA-OmpF porin, OOP family
D BFO_0030 TonB-linked outer membrane protein, SusC/RagA family K19611 fepA; ferric enterobactin receptor
D BFO_3283 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D BFO_0123 TonB-dependent receptor plug domain protein K16092 btuB; vitamin B12 transporter
D BFO_1510 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D BFO_2271 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_2286 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_2635 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_2801 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_2915 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_0298 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_0588 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D BFO_2076 putative TonB-dependent hemin utilization receptor HmuR K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D BFO_2621 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D BFO_2077 outer membrane porin BtuB family protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D BFO_2513 TonB-linked outer membrane protein, SusC/RagA family K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BFO_0521 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BFO_2605 TonB-dependent receptor plug domain protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BFO_1769 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BFO_2213 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BFO_2639 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_0552 polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D BFO_1445 outer membrane protein, OMP85 family K07277 SAM50; outer membrane protein insertion porin family
D BFO_2721 yfiO; outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD
D BFO_1627 putative cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D BFO_1612 metal cation transporter, ZIP family K07238 TC.ZIP; zinc transporter, ZIP family
D BFO_0027 putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D BFO_0215 L-rhamnose-proton symport protein (RhaT) K02856 rhaT; L-rhamnose-H+ transport protein
D BFO_0127 transporter, anaerobic C4-dicarboxylate uptake (Dcu) family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D BFO_2713 transporter, lactate permease family K03303 lutP; lactate permease
D BFO_0752 K+-dependent Na+/Ca+ exchanger family protein K07301 yrbG; cation:H+ antiporter
D BFO_0145 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D BFO_2116 TrkA C-terminal domain protein K26735 KEA4_5_6; K+:H+ antiporter
D BFO_0837 transporter, CPA2 family K26731 CHX; K+:H+ antiporter
D BFO_0519 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D BFO_0518 TrkA N-terminal domain protein K03499 trkA; trk/ktr system potassium uptake protein
D BFO_0999 pyrP; uracil permease K02824 uraA; uracil permease
D BFO_2773 pbuG; guanine/hypoxanthine permease PbuG K06901 pbuG; adenine/guanine/hypoxanthine permease
D BFO_1802 chloride transporter, ClC family K03281 clcA; chloride channel protein, CIC family
D BFO_3091 chromate transport protein K07240 chrA; chromate transporter
D BFO_3092 chromate transport protein K07240 chrA; chromate transporter
D BFO_0593 sulP; sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D BFO_1155 Na/Pi-cotransporter II-like protein K03324 yjbB; phosphate:Na+ symporter
D BFO_2525 putative membrane protein K09125 yhhQ; queuosine precursor transporter
D BFO_0402 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D BFO_0953 TonB-dependent receptor K03832 tonB; periplasmic protein TonB
D BFO_1302 OmpA family protein K03640 pal; peptidoglycan-associated lipoprotein
D BFO_2640 WD40-like protein K03641 tolB; TolB protein
D BFO_2495 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D BFO_0962 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D BFO_0965 carboxyl transferase domain protein K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D BFO_0963 putative glutaconyl-CoA decarboxylase subunit gamma K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D BFO_3142 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D BFO_1286 auxiliary transport protein, membrane fusion protein (MFP) family protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D BFO_0551 chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D BFO_1197 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0589 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0724 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2563 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2813 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2972 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1406 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2106 hypothetical protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1797 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2014 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1299 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1719 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1398 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2206 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0395 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2986 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0971 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0982 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2802 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2287 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2601 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1455 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1192 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_3315 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0498 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_1202 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2914 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2744 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2270 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2634 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0299 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_0493 hypothetical protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_3111 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D BFO_2607 pnuC; nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D BFO_2045 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D BFO_0023 Mg2+ transporter-C, MgtC family K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:tfo02044]
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1415 hypothetical protein K02237 comEA; competence protein ComEA
D BFO_0608 putative dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D BFO_0427 ComEC/Rec2-like protein K02238 comEC; competence protein ComEC
D BFO_3042 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BFO_1941 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BFO_3024 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BFO_1566 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D BFO_3050 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BFO_2888 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BFO_0181 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D BFO_2752 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BFO_3343 twin arginine-targeting protein, translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D BFO_3344 putative twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:tfo02042]
D BFO_1741 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BFO_2908 gldE; gliding motility-associated protein GldE K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:tfo02022]
D BFO_1221 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_2007 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_0894 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D BFO_1236 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D BFO_3002 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D BFO_0147 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D BFO_2048 response regulator receiver domain protein K02477 K02477; two-component system, LytTR family, response regulator
D BFO_1237 Sigma-54 interaction domain protein K07713 zraR; two-component system, NtrC family, response regulator HydG
D BFO_2853 response regulator receiver domain protein K19694 chiS; two-component system, sensor histidine kinase ChiS
C 02035 Bacterial motility proteins [BR:tfo02035]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:tfo04812]
D BFO_3351 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D BFO_0397 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BFO_0398 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D BFO_0744 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D BFO_0745 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:tfo04147]
D BFO_1739 Hsp90 protein K04079 HSP90A; molecular chaperone HtpG
D BFO_2068 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BFO_0261 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BFO_0227 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BFO_1460 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BFO_3131 SPFH/Band 7/PHB domain protein K07192 FLOT; flotillin
D BFO_1437 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BFO_0677 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D BFO_3358 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BFO_1007 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BFO_1659 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BFO_2044 putative inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BFO_1939 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D BFO_1032 histidine triad domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BFO_0947 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_3175 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_0642 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BFO_1130 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D BFO_2152 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D BFO_0473 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BFO_1814 putative argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BFO_1182 F5/8 type C domain protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BFO_2737 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BFO_2041 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BFO_0974 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BFO_0816 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BFO_2319 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BFO_2659 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BFO_0195 D-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BFO_3350 putative phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BFO_3055 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BFO_0253 etfA_1; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D BFO_1491 etfA_2; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D BFO_0458 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BFO_2613 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:tfo02048]
D BFO_2343 cas1; CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype K15342 cas1; CRISP-associated protein Cas1
D BFO_2344 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D BFO_2333 cas3; CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D BFO_2332 csp1; CRISPR-associated protein, Csp1 family K19075 cst2; CRISPR-associated protein Cst2
D BFO_2336 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D BFO_2328 cas6; CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D BFO_2337 hypothetical protein K07016 csm1; CRISPR-associated protein Csm1
D BFO_2338 csm2; CRISPR-associated protein, Csm2 family K19138 csm2; CRISPR-associated protein Csm2
D BFO_2339 csm3; CRISPR-associated RAMP protein, Csm3 family K09002 csm3; CRISPR-associated protein Csm3
D BFO_2340 csm4; CRISPR-associated RAMP protein, Csm4 family K19139 csm4; CRISPR-associated protein Csm4
D BFO_2341 csm5; CRISPR-associated RAMP protein, Csm5 family K19140 csm5; CRISPR-associated protein Csm5
D BFO_1961 helicase C-terminal domain protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D BFO_1966 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D BFO_1964 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D BFO_1962 N-6 DNA Methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D BFO_2133 DNA (cytosine-5-)-methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D BFO_0631 putative modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BFO_0836 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D BFO_0530 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0532 HipA N-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0533 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_0597 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BFO_2252 toxin-antitoxin system, toxin component, RelE family K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D BFO_2253 DNA-binding helix-turn-helix protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BFO_0397 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BFO_3351 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D BFO_0740 DNA gyrase/topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D BFO_1082 putative DNA gyrase, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D BFO_1930 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BFO_3270 hypothetical protein K19171 dndD; DNA sulfur modification protein DndD
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:tfo04090]
D BFO_1007 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BFO_1659 peptidase, S9A/B/C family, catalytic domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:tfo01504]
D BFO_1235 elongation factor Tu GTP binding domain protein K18220 tetM; ribosomal protection tetracycline resistance protein
D BFO_0233 TonB-dependent receptor K02172 blaR1; bla regulator protein blaR1
D BFO_0333 TonB-dependent receptor K02172 blaR1; bla regulator protein blaR1
D BFO_0232 transcriptional regulator, BlaI/MecI/CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BFO_0332 transcriptional regulator, BlaI/MecI/CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D BFO_1449 putative D-Ala-D-Ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D BFO_0459 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_1288 outer membrane efflux protein K12340 tolC; outer membrane protein
D BFO_2792 outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tfo00537]
D BFO_2659 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:tfo03100]
D BFO_1119 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BFO_0639 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BFO_3319 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BFO_0825 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_2322 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_2135 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_1925 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BFO_3012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BFO_3281 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BFO_2126 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BFO_2509 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BFO_0480 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BFO_1713 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BFO_1711 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BFO_0248 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_2825 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_0600 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_0290 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BFO_2199 tRNA-His K14226 tRNA-His; tRNA His
D BFO_0640 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BFO_3320 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BFO_0249 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_0288 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_1351 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_1974 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_0289 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BFO_1085 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BFO_2004 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BFO_0714 tRNA-Met K14230 tRNA-Met; tRNA Met
D BFO_0734 tRNA-Met K14230 tRNA-Met; tRNA Met
D BFO_2177 tRNA-Met K14230 tRNA-Met; tRNA Met
D BFO_0126 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BFO_0416 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BFO_0295 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BFO_2250 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BFO_2740 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_1354 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_0956 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_2531 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BFO_1938 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_1647 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_1937 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_2931 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BFO_1940 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BFO_0601 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BFO_0647 tRNA-Val K14237 tRNA-Val; tRNA Val
D BFO_0641 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BFO_3321 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BFO_3317 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BFO_0637 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BFO_0636 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BFO_3316 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BFO_3150 rnpB; Bacterial RNase P class A K01978 rnpB; M1 RNA
D BFO_2852 BFO_2852 K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D BFO_2293 gno; gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D BFO_2548 putative NADH-dependent butanol dehydrogenase A K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D BFO_1635 anaerobic sulfatase maturase K24118 atsB; serine-type anaerobic sulfatase-maturating enzyme [EC:1.1.98.7]
D BFO_2894 putative indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D BFO_2895 putative indolepyruvate ferredoxin oxidoreductase, beta subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D BFO_0803 msrB; methionine-R-sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D BFO_2570 putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D BFO_2700 ahpC; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D BFO_2494 putative ferritin-1 K02217 ftnA; ferritin [EC:1.16.3.2]
D BFO_1029 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D BFO_2797 argF'; N-acetylornithine carbamoyltransferase K13043 argF; N-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11]
D BFO_3338 nodulation protein L K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D BFO_0760 lgt_1; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D BFO_1810 lgt_2; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D BFO_2219 ApbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D BFO_1347 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D BFO_2209 GDSL-like protein K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D BFO_0492 glycosyl hydrolase family 2, sugar binding domain protein K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117]
D BFO_0655 glycosyl hydrolase family 2, sugar binding domain protein K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117]
D BFO_0798 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D BFO_1313 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D BFO_2224 HDIG domain protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D BFO_0955 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D BFO_0580 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D BFO_1405 glycosyl hydrolase family 10 K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D BFO_1263 hypothetical protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D BFO_0466 alpha amylase, catalytic domain protein K21575 susA; neopullulanase [EC:3.2.1.135]
D BFO_2285 putative unsaturated glucuronyl hydrolase K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D BFO_1799 putative lipoprotein K26288 E3.2.1.218; alpha-3'-ketoglucosidase [EC:3.2.1.218]
D BFO_3045 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BFO_1006 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D BFO_1846 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D BFO_1166 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BFO_2884 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BFO_0133 pyruvate formate lyase K18427 hpdB; 4-hydroxyphenylacetate decarboxylase large subunit [EC:4.1.1.83]
D BFO_0134 hypothetical protein K18428 hpdC; 4-hydroxyphenylacetate decarboxylase small subunit [EC:4.1.1.83]
D BFO_2118 YjeF C-terminal domain protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D BFO_2210 cyclically-permuted mutarotase family protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D BFO_2526 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D BFO_2760 putative electron transport complex protein RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D BFO_2759 rnfC; electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D BFO_2758 rnfB; electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D BFO_2146 nqrA; NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D BFO_2145 nqrB; NADH:ubiquinone oxidoreductase, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D BFO_2144 nqrC; NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D BFO_2143 nqrD; NADH:ubiquinone oxidoreductase, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D BFO_2142 nqrE; NADH:ubiquinone oxidoreductase, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D BFO_2141 nqrF; NADH:ubiquinone oxidoreductase, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D BFO_2716 cysteine-rich domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D BFO_2715 putative iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D BFO_2714 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D BFO_2761 rnfG; electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D BFO_2762 rnfE; electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D BFO_2763 putative NADH:ubiquinone oxidoreductase, E subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D BFO_2070 flavodoxin K03839 fldA; flavodoxin I
D BFO_0254 etfB_1; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D BFO_1490 etfB_2; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D BFO_0243 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D BFO_1390 putative membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D BFO_2036 Tex-like protein N-terminal domain protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D BFO_1503 tig; trigger factor K03545 tig; trigger factor
D BFO_2995 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D BFO_1393 Mg chelatase-like protein K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D BFO_1430 putative DNA repair protein RadC K03630 radC; DNA repair protein RadC
D BFO_0652 TIGR00252 family protein K07460 yraN; putative endonuclease
D BFO_0567 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease
D BFO_0799 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D BFO_1849 recombination factor protein RarA K07478 ycaJ; putative ATPase
D BFO_1159 transposase, IS4 family K07481 K07481; transposase, IS5 family
D BFO_0527 transposase, IS4 family K07481 K07481; transposase, IS5 family
D BFO_1582 transposase, IS4 family K07481 K07481; transposase, IS5 family
D BFO_2085 transposase, IS4 family K07481 K07481; transposase, IS5 family
D BFO_3275 transposase, IS4 family K07481 K07481; transposase, IS5 family
D BFO_2768 transposase K07485 K07485; transposase
D BFO_1534 transposase K07485 K07485; transposase
D BFO_1645 transposase K07485 K07485; transposase
D BFO_1110 transposase, IS116/IS110/IS902 family K07486 K07486; transposase
D BFO_3048 transposase, IS116/IS110/IS902 family K07486 K07486; transposase
D BFO_3278 transposase, IS116/IS110/IS902 family K07486 K07486; transposase
D BFO_1583 transposase, IS116/IS110/IS902 family K07486 K07486; transposase
D BFO_1378 transposase, IS116/IS110/IS902 family K07486 K07486; transposase
D BFO_1821 transposase, IS116/IS110/IS902 family K07486 K07486; transposase
D BFO_3176 integrase core domain protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D BFO_1586 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D BFO_2795 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D BFO_0787 Sodium:neurotransmitter symporter family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D BFO_3155 sodium bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
C 99978 Cell growth
D BFO_2701 hemerythrin HHE cation binding domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D BFO_2305 putative membrane protein K06384 spoIIM; stage II sporulation protein M
D BFO_1512 peptidase, M23 family K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D BFO_1785 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D BFO_2951 putative PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D BFO_2522 PhoH family protein K07175 phoH2; PhoH-like ATPase
C 99992 Structural proteins
D BFO_2546 outer membrane protein K06142 hlpA; outer membrane protein
D BFO_1446 outer membrane protein K06142 hlpA; outer membrane protein
D BFO_1447 outer membrane protein K06142 hlpA; outer membrane protein
D BFO_3103 auxiliary transport protein, membrane fusion protein (MFP) family protein K01993 ABC-2.TX; HlyD family secretion protein
D BFO_0156 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D BFO_0461 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D BFO_2300 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D BFO_2162 inner membrane protein CreD K06143 creD; inner membrane protein
D BFO_2268 hypothetical protein K21571 susE_F; starch-binding outer membrane protein SusE/F
D BFO_2269 putative lipoprotein K21571 susE_F; starch-binding outer membrane protein SusE/F
C 99994 Others
D BFO_0539 CutC family protein K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D BFO_1673 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D BFO_2321 phospholipase, patatin family K07001 K07001; NTE family protein
D BFO_1591 phospholipase, patatin family K07001 K07001; NTE family protein
D BFO_1840 HAD hydrolase, TIGR02254 family K07025 K07025; putative hydrolase of the HAD superfamily
D BFO_1674 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D BFO_1676 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D BFO_3151 YihY family protein K07058 K07058; membrane protein
D BFO_1692 Fe-S metabolism associated domain protein K02426 sufE; cysteine desulfuration protein SufE
D BFO_0224 LemA family protein K03744 lemA; LemA protein
D BFO_1911 LemA family protein K03744 lemA; LemA protein
D BFO_2839 putative membrane protein K08974 K08974; putative membrane protein
C 99997 Function unknown
D BFO_3209 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_0053 hypothetical protein K06871 K06871; uncharacterized protein
D BFO_0060 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_0079 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_0100 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_2244 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_0853 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_1424 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_0086 radical SAM domain protein K06871 K06871; uncharacterized protein
D BFO_2965 putative bacteriochlorophyll 4-vinyl reductase K06872 K06872; uncharacterized protein
D BFO_1189 hydrolase, alpha/beta domain protein K06889 K06889; uncharacterized protein
D BFO_1975 hypothetical protein K06889 K06889; uncharacterized protein
D BFO_3250 SnoaL-like polyketide cyclase K06893 K06893; uncharacterized protein
D BFO_0525 hypothetical protein K06921 K06921; uncharacterized protein
D BFO_2138 HDIG domain protein K06950 K06950; uncharacterized protein
D BFO_1527 putative neutral zinc metallopeptidase K06973 K06973; uncharacterized protein
D BFO_1597 putative membrane protein K07003 K07003; uncharacterized protein
D BFO_3188 efflux transporter, HAE3 family K07003 K07003; uncharacterized protein
D BFO_2576 Acyltransferase K07003 K07003; uncharacterized protein
D BFO_3331 nucleotidyltransferase domain protein K07075 K07075; uncharacterized protein
D BFO_2067 Tat pathway signal sequence domain protein K07079 K07079; uncharacterized protein
D BFO_1079 heavy metal-associated domain protein K07089 K07089; uncharacterized protein
D BFO_1661 phosphodiesterase family protein K07095 K07095; uncharacterized protein
D BFO_1887 Ser/Thr phosphatase family protein K07098 K07098; uncharacterized protein
D BFO_0271 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_3264 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_3127 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_3204 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_0908 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_1890 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_2194 hypothetical protein K07133 K07133; uncharacterized protein
D BFO_3336 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D BFO_1658 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein
D BFO_2696 zinc ribbon domain protein K07164 K07164; uncharacterized protein
D BFO_0581 YidD family protein K08998 K08998; uncharacterized protein
D BFO_3148 hypothetical protein K08999 K08999; uncharacterized protein
D BFO_0396 YqeY-like protein K09117 K09117; uncharacterized protein
D BFO_2632 hemerythrin HHE cation binding domain protein K09155 K09155; uncharacterized protein
D BFO_0676 hypothetical protein K09704 K09704; uncharacterized protein
D BFO_3170 hypothetical protein K09790 K09790; uncharacterized protein
D BFO_1735 hypothetical protein K09793 K09793; uncharacterized protein
D BFO_0778 virulence factor B family protein K00243 K00243; uncharacterized protein
D BFO_3311 hypothetical protein K09861 K09861; uncharacterized protein
D BFO_2102 PepSY domain protein K09939 K09939; uncharacterized protein
D BFO_0018 hypothetical protein K09940 K09940; uncharacterized protein
D BFO_0090 GumN protein K09973 K09973; uncharacterized protein
D BFO_0107 GumN protein K09973 K09973; uncharacterized protein
D BFO_0089 hypothetical protein K09973 K09973; uncharacterized protein
D BFO_2988 hypothetical protein K01163 K01163; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 23, 2024