+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Taeniopygia guttata (zebra finch)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E 100223646 mRNA cap guanine-N7 methyltransferase isoform X4 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E 100232080 RNGTT; mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] E 100230524 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E 100221592 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] E 100230404 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] E 100221631 RAMAC; RNA guanine-N7 methyltransferase activating subunit isoform X2 K18708 FAM103A1; RNMT-activating mini protein D Cap binding complex E 100230311 NCBP1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1 E 100190722 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2 E 116808685 NCBP2; nuclear cap-binding protein subunit 2 isoform X1 K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E 100190453 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 E 100220791 CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 E 100228658 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 D Pre-mRNA cleavage factor IIm (CFIIm) E 100220989 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] E 100232633 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 D Cleavage and polyadenylation specificity factor (CPSF) complex E 115492558 CPSF1; LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E 100223891 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 100221106 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 100224162 CPSF4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E 115497633 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E 100223225 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 100217869 pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 100232035 WDR33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2 E 100218254 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2 E 100190013 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 100190751 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 100224238 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 100222253 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E 100228697 CSTF1; cleavage stimulation factor subunit 1 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1 E 100232693 CSTF2; cleavage stimulation factor subunit 2 isoform X3 K14407 CSTF2; cleavage stimulation factor subunit 2 E 100231989 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3 E 115492884 SYMPK; symplekin K06100 SYMPK; symplekin D U7-dependent histone pre-mRNA processing factors E 100190618 SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B' E 100190737 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3 E 105758572 SNRPF; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F E 100190253 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G E 100225687 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 E 115497060 LSM11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 E 100223891 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 100221106 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 100232693 CSTF2; cleavage stimulation factor subunit 2 isoform X3 K14407 CSTF2; cleavage stimulation factor subunit 2 E 115492884 SYMPK; symplekin K06100 SYMPK; symplekin E 100227664 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein E 105759233 uncharacterized protein LOC105759233 isoform X1 K18710 SLBP; histone RNA hairpin-binding protein E 100232114 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2 D DRB sensitivity inducing factor (DSIF) complex E 100190130 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E 115493155 SUPT5H; LOW QUALITY PROTEIN: transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 E 116807661 LOW QUALITY PROTEIN: transcription elongation factor SPT5-like K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E 100226836 METTL14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E 100227922 METTL4; N(6)-adenine-specific DNA methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] E 100224599 METTL16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] E 100221856 WTAP; pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP E 100227905 VIRMA; protein virilizer homolog K22910 VIRMA; protein virilizer E 100220221 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15 E 100232690 RBM15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15 E 100218673 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 E 100228392 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] D Poly(A) addition factors E 100223950 PAPOLG; poly(A) polymerase gamma isoform X4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 100219099 PAPOLA; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 100230187 TENT2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] E 115492169 LOW QUALITY PROTEIN: speckle targeted PIP5K1A-regulated poly(A) polymerase-like K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52] D Negative regulators of mRNA 3' end processing E 100229796 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1 E 100229176 RBM26; RNA-binding protein 26 isoform X4 K13192 RBM26; RNA-binding protein 26 E 100223734 FTO; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53] E 100228945 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] E 100218414 TARDBP; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43 C Other processing factors D 100231023 DHX40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6] D 100226847 KIN; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17 D 100229177 DNA/RNA-binding protein KIN17-like K13102 KIN; DNA/RNA-binding protein KIN17 D 100230299 METTL8; LOW QUALITY PROTEIN: mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-] D 100232221 METTL22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] D 100223113 TENT5A; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] D 100226648 TENT5B; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] D 100218876 TENT5C; terminal nucleotidyltransferase 5C isoform X2 K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] D 100221317 TENT5D; terminal nucleotidyltransferase 5D isoform X1 K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19] D 100229542 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X2 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 B mRNA surveillance and transport factors C Transport factors D EJC complex E 100190259 RBM8A; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A E 100190567 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi E 100190053 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 100190303 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 100222139 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174 E 100221713 CASC3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3 E 100190511 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18 E 100227753 PNN; pinin K13114 PNN; pinin E 100229297 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 E 100219960 SRRM1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1 D TREX complex E 100220228 THOC1; THO complex subunit 1 isoform X2 K12878 THOC1; THO complex subunit 1 E 100217886 THOC2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2 E 100225288 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3 E 100190053 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 100228184 THOC5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5 E 100225585 THOC7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7 D TREX-2 complex E 100220839 PCID2; PCI domain-containing protein 2 isoform X2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1 E 100038817 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1 E 100190235 ENY2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor E 100219839 CETN2; centrin-2 K10840 CETN2; centrin-2 E 100190601 CETN3; centrin-3 K16466 CETN3; centrin-3 E 100219247 MCM3AP; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48] D Nuclear pore complex E 100227718 TPR; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR E 100221924 RAE1; mRNA export factor K14298 RAE1; mRNA export factor E 100225299 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13 E 100220522 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37 E 100225602 NUP85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85 E 100223752 NUP43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43 E 100229792 NUP50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50 E 100217540 NUP54; nucleoporin p54 isoform X2 K14308 NUP54; nuclear pore complex protein Nup54 E 100221354 NUP88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88 E 100225723 NUP93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93 E 100226510 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E 100231466 NUP107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107 E 100219351 NUP133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133 E 100230057 NUP188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188 E 100232758 NUP153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153 E 100228993 NUP155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155 E 100231566 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160 E 100190074 NUP35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53 E 100232057 NUP205; nuclear pore complex protein Nup205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205 E 100232716 NUP210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210 E 116807539 LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210 E 100232127 NUP214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214 E 116809107 nuclear envelope pore membrane protein POM 121C-like K14316 POM121; nuclear pore complex protein Nup121 E 100224403 NUP58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45 E 100224471 NUP42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2 E 105759741 nucleoporin NUP42-like K14321 NUPL2; nucleoporin-like protein 2 E 100220323 NDC1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1 E 101233238 SEH1L; nucleoporin SEH1 isoform X2 K14299 SEH1; nucleoporin SEH1 E 100221862 E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] E 101233233 SENP2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68] E 100218436 AAAS; aladin isoform X1 K14320 AAAS; aladin E 100190601 CETN3; centrin-3 K16466 CETN3; centrin-3 E 100217658 GLE1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1 E 115492082 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 100232267 NXT2; NTF2-related export protein 2 isoform X2 K14285 NXT1_2; NTF2-related export protein 1/2 D Ran-mediated transport factors E 100190162 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran E 100190140 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D E 100218528 acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B E 100229939 ELAVL1; ELAV-like protein 1 isoform X2 K13088 ELAVL1; ELAV-like protein 1 E 100225545 ELAVL2; ELAV-like protein 2 isoform X10 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 100228895 ELAVL4; ELAV-like protein 4 isoform X4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 100221390 FAF2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2 E 100225249 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase E 116806862 transitional endoplasmic reticulum ATPase-like K13525 VCP; transitional endoplasmic reticulum ATPase E 100229670 VCPKMT; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] E 115491709 TNPO2; transportin-2 isoform X1 K18727 TNPO2; transportin-2 E 100220104 XPO1; exportin-1 isoform X1 K14290 XPO1; exportin-1 E 115498113 XPO7; exportin-7 K18460 XPO7; exportin-7 E 100218626 RANGAP1; ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1 E 100219424 TAF15; TATA-binding protein-associated factor 2N isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15 D eIF4F and regulatory proteins E 100221090 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X2 K03259 EIF4E; translation initiation factor 4E E 100189975 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E 100221323 EIF4E1B; eukaryotic translation initiation factor 4E type 1B isoform X1 K03259 EIF4E; translation initiation factor 4E E 100230686 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A E 100225457 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 100229543 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 115491355 EIF4B; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 100217516 EIF4H; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H E 100230789 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 isoform X1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 E 100221636 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 E 116808930 EIF4EBP3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3 E 100217947 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 100226720 ANGEL2; protein angel homolog 2 K18729 ANGEL; protein angel E 100219076 ANGEL1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel E 100191006 FMR1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein E 100221134 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein E 100220372 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 100219878 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 100220363 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5 E 100231397 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3 E 100222581 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100222328 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100225648 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100226622 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100227964 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 100230133 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 100223990 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein E 100220002 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein E 100228528 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein E 100230922 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 E 116806924 LOW QUALITY PROTEIN: polyadenylate-binding protein-interacting protein 1-like K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 E 100219747 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 E 115494847 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 E 100225803 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1 E 100190027 MCTS1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence E 100220892 DENR; density-regulated protein K24272 DENR; density-regulated protein D APOBEC1-ACF complex E 101233449 uncharacterized protein LOC101233449 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] E 100231854 A1CF; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor D Other transport factors E 100227564 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 115491350 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 100227649 MSI1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi E 100223266 MSI2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi E 100227223 DAZAP1; DAZ-associated protein 1 isoform X3 K14411 MSI; RNA-binding protein Musashi E 100225632 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein E 100229005 PELO; protein pelota homolog K06965 PELO; protein pelota E 115496772 PABPN1L; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2 E 100228959 ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E 115498327 DDX25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7] E 115491599 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1 E 100230379 RCC1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation E 100231193 LARP6; la-related protein 6 isoform X1 K18733 LARP6; la-related protein 6 E 105758935 la-related protein 6 K18733 LARP6; la-related protein 6 E 115497093 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha E 115498211 PURB; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta E 100229195 POLDIP3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3 E 100219766 ZC3H11A; zinc finger CCCH domain-containing protein 11A isoform X1 K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 E 100226394 PATL2; protein PAT1 homolog 2 isoform X1 K24823 PATL2; protein PAT1 homolog 2 C Surveillance factors D Surveillance complex E 100220649 ETF1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1 E 100218738 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3 E 100223354 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 100218189 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2 E 100221665 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 E 100224732 UPF3A; regulator of nonsense transcripts 3A isoform X3 K14328 UPF3; regulator of nonsense transcripts 3 D Protein phosphatase 2A E 100228749 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 100190531 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 100217782 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E 100232829 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 100225699 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 100225233 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 100223115 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 100230554 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 100226260 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 100218950 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 100223842 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 100229655 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X2 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 100224856 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 100218071 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors E 100224160 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 100231729 SMG5; protein SMG5 K11125 SMG5; protein SMG5 E 100222348 SMG6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 100220929 SMG7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7 E 100230008 SMG8; protein SMG8 K18734 SMG8; protein SMG8 E 115492905 SMG9; protein SMG9 K18735 SMG9; protein SMG9 E 100230133 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 101232841 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 E 100217768 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 E 100220515 GTPBP1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1 C Factors involved in mRNA localization D Cargo complex E 100229265 PUM3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6 E 100221573 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V E 100225447 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V E 100222193 MYO5B; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V E 100227228 BICD2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D E 100231083 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D D Factors that have mRNA localization signals E 115497627 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1 E 751978 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1 E 115496608 actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1 E 100190725 MBP; putative myelin basic protein variant 2 K17269 MBP; myelin basic protein E 100226733 VIM; vimentin K07606 VIM; vimentin E 100190094 putative metallothionein-I K14739 MT1_2; metallothionein 1/2 E 100190731 putative metallothionein II variant 2 K14739 MT1_2; metallothionein 1/2 E 100219849 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein E 100227213 GDF1; embryonic growth/differentiation factor 1 isoform X1 K05495 GDF1; growth differentiation factor 1 E 100225628 T-box-containing protein TBX6L K10180 TBX6; T-box protein 6 E 115495820 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1 D Trans-acting binding proteins E 100225147 FUBP1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein E 100231123 FUBP3; far upstream element-binding protein 3 isoform X4 K13210 FUBP; far upstream element-binding protein E 115491568 KHSRP; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein E 100223995 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha E 100231502 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha E 115492081 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma E 100229286 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1 E 100227885 HAX1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1 E 100217620 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X7 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 E 100225412 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen E 100230723 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen E 100231176 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 E 100217525 PTBP1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1 E 100222581 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100222328 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100225648 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100226622 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein D Other mRNA localization factors E 100191006 FMR1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein E 100221134 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein E 100220372 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 100219878 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein E 100232514 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2 E 100223410 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 100221119 PCBP3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 100225965 PCBP4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 105760389 CAPRIN1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1 E 100219640 CAPRIN2; caprin-2 isoform X2 K18744 CAPRIN2; caprin-2 E 100222179 YBX1; Y-box-binding protein 1 isoform X2 K09276 YBX1; Y-box-binding protein 1 C mRNA cycle factors D Common to processing body (P body) and stress granule E 100232132 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 100222761 AGO3; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C E 100219787 AGO2; protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 100229500 protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C E 100232386 protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 100221090 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X2 K03259 EIF4E; translation initiation factor 4E E 100189975 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E 100221323 EIF4E1B; eukaryotic translation initiation factor 4E type 1B isoform X1 K03259 EIF4E; translation initiation factor 4E E 100223354 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 100227964 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 100226928 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 100225899 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 100227119 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 115496585 MEX3B; RNA-binding protein MEX3B isoform X1 K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 116806925 LOW QUALITY PROTEIN: RNA-binding E3 ubiquitin-protein ligase MEX3C-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 100227496 FASTK; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] E 100224826 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14 E 100230047 LSM14A; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14 E 100232514 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2 E 100222179 YBX1; Y-box-binding protein 1 isoform X2 K09276 YBX1; Y-box-binding protein 1 E 100231201 LIMD1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein E 100231065 WTIP; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein E 101233449 uncharacterized protein LOC101233449 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] E 100217900 MOV10; helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 100220905 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2 E 100232732 TNPO1; transportin-1 isoform X1 K18752 TNPO1; transportin-1 E 116806923 transportin-1-like isoform X1 K18752 TNPO1; transportin-1 E 100224160 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 100231729 SMG5; protein SMG5 K11125 SMG5; protein SMG5 E 100222348 SMG6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 100220929 SMG7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7 E 100232515 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor E 115495518 ZFP36L1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor E 100221494 LIN28B; protein lin-28 homolog B isoform X3 K18754 LIN28; protein lin-28 E 100226698 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28 E 100219938 HTT; huntingtin isoform X1 K04533 HD; huntingtin E 100225403 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8 E 100225173 BICC1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C E 100227564 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 115491350 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 100226105 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X6 K04345 PKA; protein kinase A [EC:2.7.11.11] E 100225808 LARP1B; la-related protein 1B isoform X3 K18757 LARP1; la-related protein 1 E 100227120 LARP1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1 E 100220881 ATXN2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L D P-body specific factors E 100223050 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E 100232646 DCP1A; mRNA-decapping enzyme 1A isoform X2 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] E 100230694 DCP1B; mRNA-decapping enzyme 1B isoform X2 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 100190294 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 100190009 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 100190604 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 100190552 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 100190106 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 100230262 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E 100221872 KLC1; kinesin light chain 1 isoform X3 K10407 KLC; kinesin light chain E 100219098 KLC4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain E 100221573 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V E 100225447 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V E 100222193 MYO5B; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V E 100227941 TUBA8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha E 100218848 tubulin alpha-5 chain K07374 TUBA; tubulin alpha E 100224687 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha E 100223131 tubulin alpha-8 chain K07374 TUBA; tubulin alpha E 100229371 tubulin alpha-3 chain K07374 TUBA; tubulin alpha E 100229710 tubulin alpha-1B chain K07374 TUBA; tubulin alpha E 115490530 tubulin alpha-1C chain K07374 TUBA; tubulin alpha E 115491411 TUBA1A; tubulin alpha-1A chain K07374 TUBA; tubulin alpha E 100222581 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100222328 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100225648 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100226622 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 100220363 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5 E 100231397 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3 E 100219713 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 100217681 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 100229361 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X9 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 100224758 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X6 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 100221773 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 100229141 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 100218557 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 100231015 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 100224176 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 100221329 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 100227239 GARRE1; uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1 E 105758465 DIS3L2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] E 100232559 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 100232100 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 E 100189947 putative cdna MGC75753 K14443 TOB; protein Tob/BTG E 100217692 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG E 100219621 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG E 100224406 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG E 100224586 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG E 100226571 protein BTG2 K14443 TOB; protein Tob/BTG E 100217947 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 100225743 PATL1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 E 100228053 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 100221250 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 100218189 UPF2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2 E 100221665 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 E 100224732 UPF3A; regulator of nonsense transcripts 3A isoform X3 K14328 UPF3; regulator of nonsense transcripts 3 E 100218781 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 100228107 POLR2G; DNA-directed RNA polymerase II subunit RPB7 isoform X1 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 E 100223594 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] E 100227263 ZAR1L; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1 E 115494959 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1 E 100221104 YTHDF3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein E 100225370 YTHDF2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein E 100225795 YTHDF1; YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein D Stress granule specific factors E 100218641 TIAL1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR E 115498207 TIA1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR E 100223990 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein E 100220002 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein E 100228528 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein E 100225412 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen E 100230723 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen E 100191006 FMR1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein E 100221134 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein E 100229939 ELAVL1; ELAV-like protein 1 isoform X2 K13088 ELAVL1; ELAV-like protein 1 E 100228112 G3BP1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3] E 100226202 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 E 100219802 EIF2A; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A E 100225128 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B E 100230686 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A E 100190303 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 115491355 EIF4B; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 100225457 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 100229543 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 100229905 RPS6KA2; ribosomal protein S6 kinase alpha-2 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 100227972 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 100217905 RPS6KA6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 100217995 RPS6KA1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 100223400 TRAF2; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] E 115492082 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 100217625 TDRD3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3 E 100228981 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4 E 115491385 LARP4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4 B mRNA degradation factors C 5'-3' decay D Decapping complex E 100232646 DCP1A; mRNA-decapping enzyme 1A isoform X2 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] E 100230694 DCP1B; mRNA-decapping enzyme 1B isoform X2 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 100223050 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E 100226928 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 100228053 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 100221250 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 100225743 PATL1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 D Lsm complex E 100190294 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 100190009 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 100190604 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 100190552 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 100190106 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 100230262 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E 100232132 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 100225776 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] E 100190266 NUDT16L1; tudor-interacting repair regulator protein K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64] D Other 5'-3' decay factors E 100217679 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 100231759 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] C 3'-5' decay D Core exosome factors E 100221784 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4 E 100226326 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 100232740 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40 E 100221009 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46 E 115496766 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3 E 100221537 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 E 100226285 EXOSC8; exosome complex component RRP43 isoform X2 K12586 RRP43; exosome complex component RRP43 E 100221921 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E 100223496 DIS3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] E 100217759 DIS3L; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-] E 100222570 EXOSC10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] E 100219493 C1D; nuclear nucleic acid-binding protein C1D isoform X1 K12592 C1D; exosome complex protein LRP1 E 100227988 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type D TRAMP complex E 100220882 TENT4A; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 100231411 TENT4B; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 100227075 ZCCHC7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2 E 100229654 MTREX; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex E 100219531 TTC37; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3 E 100189997 WDR61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61 D Ccr4-NOT complex E 100218557 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 100231015 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 100224758 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X6 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 100221773 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 100229141 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 100224176 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 100221329 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 100230308 CNOT9; CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9 E 100232175 CNOT10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10 D Pan complex E 100232559 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 100232100 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 D Other 3'-5' decay factors E 100219669 PARN; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 100225677 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 100229315 ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] E 116808722 ATP-dependent DNA/RNA helicase DHX36-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] E 100189947 putative cdna MGC75753 K14443 TOB; protein Tob/BTG E 100217692 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG E 100219621 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG E 100224406 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG E 100224586 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG E 100226571 protein BTG2 K14443 TOB; protein Tob/BTG E 100231561 NOCT; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108] E 100230265 ERI1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] E 100225121 ERI2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] E 100217679 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 100230698 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] E 100225103 IREB2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2 E 100231759 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] E 100232554 HELZ2; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] E 100230608 NRDE2; nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2 E 100227811 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug E 100226390 FOCAD; focadhesin K27498 FOCAD; focadhesin C Other degradation factors D RNases E 100231042 ZC3H12C; probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 100219944 ZC3H12A; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 100228442 ZC3H12B; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 100223141 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E 100220998 DROSHA; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3] E 100226295 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases D Other RNA degradosome components E 100231650 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 100231891 ENO1; alpha-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 100223873 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E 100229947 PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X3 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] E 100220560 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] E 101233004 PFKM; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E 100226431 HSPA9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK E 100218505 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E 100226326 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 100221784 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4 D Cofactors E 100221537 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024