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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Taeniopygia guttata (zebra finch)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        115492686 POLR2A; DNA-directed RNA polymerase II subunit RPB1 isoform X1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        100220604 POLR2B; DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        100190236 POLR2C; DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        100190465 POLR2J; DNA-directed RNA polymerase II subunit RPB11-a	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        100190224 POLR2D; DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        100228107 POLR2G; DNA-directed RNA polymerase II subunit RPB7 isoform X1	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        100190621 putative DNA directed RNA polymerase II polypeptide I	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        100222301 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100190705 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100190183 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100227696 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        105759082 GTF2A1L; TFIIA-alpha and beta-like factor isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        100219035 GTF2A1; transcription initiation factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        100190631 GTF2A2; transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        100220653 GTF2B; transcription initiation factor IIB isoform X3	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        100228722 TBPL2; TATA box-binding protein-like protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100227951 TBP; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100232377 TBPL1; TATA box-binding protein-like protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100221321 TAF1; transcription initiation factor TFIID subunit 1 isoform X3	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        100225920 TAF2; transcription initiation factor TFIID subunit 2 isoform X3	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        101233630 TAF3; transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        100224103 TAF4B; transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100219067 TAF4; transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        101233672 transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100224759 TAF5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100222154 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        101233986 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        115492648 TAF6; transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        100228159 TAF7L; transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        100225581 TAF8; transcription initiation factor TFIID subunit 8 isoform X2	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        100231294 TAF9B; transcription initiation factor TFIID subunit 9B	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        100190319 TAF10; transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        100228800 TAF11; transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        100217940 TAF12; transcription initiation factor TFIID subunit 12 isoform X2	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100190181 TAF13; transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        100219424 TAF15; TATA-binding protein-associated factor 2N isoform X1	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        100217845 GTF2E1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        115494966 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        100231029 GTF2E2; transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        100221487 GTF2F2; general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        100232545 GTF2H1; general transcription factor IIH subunit 1 isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        100217858 general transcription factor IIH subunit 2 isoform X1	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        100227677 GTF2H3; general transcription factor IIH subunit 3	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        100232287 ERCC3; general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        100222149 GTF2H5; general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        100230524 CDK7; cyclin-dependent kinase 7 isoform X1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        100231586 MNAT1; CDK-activating kinase assembly factor MAT1 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        100231331 CCNH; cyclin-H isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        100190665 MED6; mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        100226049 MED8; mediator of RNA polymerase II transcription subunit 8 isoform X2	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        115492750 MED11; mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        100232036 MED17; mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        100226116 MED18; mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        100228618 MED19; mediator of RNA polymerase II transcription subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        100221686 MED20; mediator of RNA polymerase II transcription subunit 20 isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        100229213 MED22; mediator of RNA polymerase II transcription subunit 22 isoform X1	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        100228573 MED28; mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        115493157 MED29; mediator of RNA polymerase II transcription subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        100190652 MED30; mediator of RNA polymerase II transcription subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        100224593 MED1; mediator of RNA polymerase II transcription subunit 1 isoform X2	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        105758977 mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        100218591 MED4; mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        100189971 MED7; mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        100190750 MED9; mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        100190136 MED10; mediator of RNA polymerase II transcription subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        100190702 MED21; mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        100190401 MED31; mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        100228894 MED14; mediator of RNA polymerase II transcription subunit 14 isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        100231486 MED15; mediator of RNA polymerase II transcription subunit 15	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        100221371 MED16; mediator of RNA polymerase II transcription subunit 16 isoform X1	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        100226313 CDK19; cyclin-dependent kinase 19 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        100221466 CDK8; cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        100222499 CCNC; cyclin-C isoform X1	K15161 CCNC; cyclin-C 
E        115490542 MED12; mediator of RNA polymerase II transcription subunit 12 isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        100223296 MED13; mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        100226614 MED13L; mediator of RNA polymerase II transcription subunit 13-like	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        100221789 MED23; mediator of RNA polymerase II transcription subunit 23 isoform X2	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        100220749 MED24; mediator of RNA polymerase II transcription subunit 24	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        100217521 MED26; mediator of RNA polymerase II transcription subunit 26 isoform X1	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        100190022 putative cofactor required for Sp1 transcriptional activation subunit 8	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        100227387 KAT2B; histone acetyltransferase KAT2B isoform X1	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        100221709 KAT2A; histone acetyltransferase KAT2A isoform X1	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        100227107 TRRAP; transformation/transcription domain-associated protein isoform X2	K08874 TRRAP; transformation/transcription domain-associated protein 
E        100219785 SUPT3H; transcription initiation protein SPT3 homolog isoform X2	K11313 SUPT3H; transcription initiation protein SPT3 
E        100222358 TADA2A; transcriptional adapter 2-alpha	K11314 TADA2A; transcriptional adapter 2-alpha 
E        100218958 TADA2B; transcriptional adapter 2-beta	K15127 TADA2B; transcriptional adapter 2-beta 
E        100232331 TADA3; transcriptional adapter 3	K11315 TADA3; transcriptional adapter 3 
E        100227567 TADA1; transcriptional adapter 1 isoform X1	K11317 TADA1; transcriptional adapter 1 
E        100225920 TAF2; transcription initiation factor TFIID subunit 2 isoform X3	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        100224103 TAF4B; transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100219067 TAF4; transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        101233672 transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100224759 TAF5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100222154 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        101233986 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        115492648 TAF6; transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        100228159 TAF7L; transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        100231294 TAF9B; transcription initiation factor TFIID subunit 9B	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        100190319 TAF10; transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        100217940 TAF12; transcription initiation factor TFIID subunit 12 isoform X2	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        115490664 ATXN7L3; ataxin-7-like protein 3	K11363 SGF11; SAGA-associated factor 11 
E        100221967 SUPT7L; STAGA complex 65 subunit gamma	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        100222708 ATXN7; ataxin-7 isoform X1	K11318 ATXN7; ataxin-7 
E        100222578 ATXN7L1; ataxin-7-like protein 1 isoform X1	K11318 ATXN7; ataxin-7 
E        115490599 ATXN7L2; ataxin-7-like protein 2 isoform X1	K11318 ATXN7; ataxin-7 
E        778444 CHD1; chromodomain-helicase-DNA-binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        778443 CHD1W; chromo-helicase DNA-binding protein	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        100190235 ENY2; transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        100226043 USP22; ubiquitin carboxyl-terminal hydrolase 22 isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        100219002 SF3B3; splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        100226440 SMARCA2; probable global transcription activator SNF2L2 isoform X2	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        115491703 SMARCA4; transcription activator BRG1 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        100229429 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        100229325 SMARCC1; SWI/SNF complex subunit SMARCC1 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        105760311 SMARCC2; SWI/SNF complex subunit SMARCC2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        100230331 SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        100219764 SMARCD3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        105758919 SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        100232351 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        115497627 ACTG1; actin, cytoplasmic 2	K05692 ACTB_G1; actin beta/gamma 1 
E        751978 ACTB; actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        115496608 actin, cytoplasmic type 5	K05692 ACTB_G1; actin beta/gamma 1 
E        100231756 ACTL6A; actin-like protein 6A	K11340 ACTL6A; actin-like protein 6A 
E        115492705 ACTL6B; actin-like protein 6B	K11652 ACTL6B; actin-like protein 6B 
E        100222829 ARID1A; AT-rich interactive domain-containing protein 1A isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        100226065 ARID1B; AT-rich interactive domain-containing protein 1B isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        100222266 ARID2; AT-rich interactive domain-containing protein 2 isoform X1	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        100227832 PBRM1; protein polybromo-1 isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        100229429 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        116806894 activated RNA polymerase II transcriptional coactivator p15 isoform X1	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        100221640 CCAR1; cell division cycle and apoptosis regulator protein 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        100190487 TCEA2; transcription elongation factor A protein 2	K03145 TFIIS; transcription elongation factor S-II 
E        100229754 TCEA1; transcription elongation factor A protein 1	K03145 TFIIS; transcription elongation factor S-II 
E        100218052 TCEA3; transcription elongation factor A protein 3 isoform X3	K03145 TFIIS; transcription elongation factor S-II 
E        100190130 SUPT4H1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        115493155 SUPT5H; LOW QUALITY PROTEIN: transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
E        116807661 LOW QUALITY PROTEIN: transcription elongation factor SPT5-like	K15172 SUPT5H; transcription elongation factor SPT5 
E        100225262 SUPT6H; transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        100227475 TTF2; transcription termination factor 2 isoform X1	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        100232633 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        115492558 CPSF1; LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        100221106 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100224162 CPSF4; cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        115497633 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        100190013 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100190751 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100224238 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        115492884 SYMPK; symplekin	K06100 SYMPK; symplekin 
E        100222253 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        100225776 XRN2; 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        100190582 RPRD1B; regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100232030 RPRD1A; regulation of nuclear pre-mRNA domain-containing protein 1A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100221797 SFPQ; splicing factor, proline- and glutamine-rich	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        100219936 SCAF8; SR-related and CTD-associated factor 8 isoform X1	K13191 RBM16; RNA-binding protein 16 
E        100230939 SCAF4; SR-related and CTD-associated factor 4 isoform X1	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        100217593 SETX; probable helicase senataxin isoform X1	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
D      PAF1 complex
E        105760029 PAF1; RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        100222932 CDC73; parafibromin	K15175 CDC73; parafibromin 
E        100229677 CTR9; RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        100231203 LEO1; RNA polymerase-associated protein LEO1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        100223977 RTF1; LOW QUALITY PROTEIN: RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        100221759 NELFA; negative elongation factor A	K15179 WHSC2; negative elongation factor A 
E        105760943 NELFB; negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        100220122 NELFCD; negative elongation factor C/D isoform X1	K15181 TH1L; negative elongation factor C/D 
D      Super elongation complex (SEC)
E        100225261 ELL; RNA polymerase II elongation factor ELL isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        115492536 uncharacterized protein LOC115492536 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        116807513 RNA polymerase II elongation factor ELL2-like isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        116807514 uncharacterized protein LOC116807514 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        100226441 AFF1; AF4/FMR2 family member 1 isoform X2	K15184 AFF1; AF4/FMR2 family member 1 
E        100219524 AFF4; AF4/FMR2 family member 4	K15185 AFF4; AF4/FMR2 family member 4 
E        100224530 EAF1; ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        100222707 EAF2; ELL-associated factor 2	K15186 EAF; ELL-associated factor 
E        100222630 MLLT3; protein AF-9 isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        100225272 MLLT1; protein ENL isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        100221087 CCNT1; cyclin-T1	K15188 CCNT; cyclin T 
E        100223271 CCNT2; cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        100220490 CDK9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        100225261 ELL; RNA polymerase II elongation factor ELL isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        115492536 uncharacterized protein LOC115492536 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        116807513 RNA polymerase II elongation factor ELL2-like isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        116807514 uncharacterized protein LOC116807514 isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        101232966 ICE1; little elongation complex subunit 1 isoform X1	K26143 ICE1; little elongation complex subunit 1 
E        100223518 ICE2; little elongation complex subunit 2 isoform X1	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        115491650 LOW QUALITY PROTEIN: bromodomain-containing protein 4	K11722 BRD4; bromodomain-containing protein 4 
E        100221087 CCNT1; cyclin-T1	K15188 CCNT; cyclin T 
E        100223271 CCNT2; cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        100220490 CDK9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        100190049 HEXIM1; protein HEXIM1	K15189 HEXIM1_2; protein HEXIM1/2 
E        101233405 MEPCE; 7SK snRNA methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        100222278 LARP7; la-related protein 7 isoform X1	K15191 LARP7; La-related protein 7 
E        100221087 CCNT1; cyclin-T1	K15188 CCNT; cyclin T 
E        100223271 CCNT2; cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        100220490 CDK9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        100232192 ZNF326; DBIRD complex subunit ZNF326 isoform X1	K13204 ZNF326; zinc finger protein 326 
D      Others
E        100227162 GTF2I; general transcription factor II-I isoform X1	K03121 TFII-I; transcription initiation factor TFII-I 
E        100217508 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 isoform X1	K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 
E        100223751 BTAF1; TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        100228332 DR1; protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        115492015 DRAP1; dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        100226808 SPTY2D1; protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        100218859 AFF2; AF4/FMR2 family member 2 isoform X1	K15194 AFF2; AF4/FMR2 family member 2 
E        100228506 AFF3; AF4/FMR2 family member 3 isoform X1	K15195 AFF3; AF4/FMR2 family member 3 
E        100222208 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        100232268 CTDSPL; CTD small phosphatase-like protein isoform X7	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        100226517 CTDSP1; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        100229158 IWS1; protein IWS1 homolog isoform X1	K17498 SPN1; transcription factor SPN1 
E        100219410 CSRNP1; cysteine/serine-rich nuclear protein 1 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        100230373 CSRNP3; cysteine/serine-rich nuclear protein 3 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        100218056 RPAP1; RNA polymerase II-associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        100232246 RPAP2; putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        100227650 RPAP3; RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        100225831 CCNK; cyclin-K	K23326 CCNK; cyclin K 
E        100218974 GPN2; GPN-loop GTPase 2 isoform X1	K24104 GPN; GPN-loop GTPase 
E        100189946 GPN3; GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        100223287 GPN1; GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        100232803 POLR3A; DNA-directed RNA polymerase III subunit RPC1 isoform X2	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        100231089 POLR3B; DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        100220630 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        100189957 putative RNA polymerase I 16 kDa polypeptide	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        100231141 POLR3C; DNA-directed RNA polymerase III subunit RPC3 isoform X1	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        115498101 POLR3D; DNA-directed RNA polymerase III subunit RPC4 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        100228888 POLR3E; DNA-directed RNA polymerase III subunit RPC5 isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        100220036 POLR3F; DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        100228815 POLR3GL; DNA-directed RNA polymerase III subunit RPC7-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        100230093 POLR3H; DNA-directed RNA polymerase III subunit RPC8 isoform X1	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        100219437 CRCP; DNA-directed RNA polymerase III subunit RPC9 isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
D      Pol I, II, III common subunits
E        100222301 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100190705 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100190183 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100227696 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        100226266 GTF3A; LOW QUALITY PROTEIN: transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        115492409 zinc finger protein 239	K09191 GTF3A; general transcription factor IIIA 
E        116807381 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        100228722 TBPL2; TATA box-binding protein-like protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100227951 TBP; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100232377 TBPL1; TATA box-binding protein-like protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100220106 BRF1; transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        100227113 BRF2; transcription factor IIIB 50 kDa subunit isoform X1	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        100226518 BDP1; transcription factor TFIIIB component B'' homolog isoform X1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        100219666 GTF3C1; general transcription factor 3C polypeptide 1 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        100230024 GTF3C2; general transcription factor 3C polypeptide 2 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        100224320 GTF3C3; general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        105759865 GTF3C4; general transcription factor 3C polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        100224422 GTF3C5; general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        100231067 GTF3C6; general transcription factor 3C polypeptide 6 isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        100224422 GTF3C5; general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        100224320 GTF3C3; general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        100219095 SNAPC1; snRNA-activating protein complex subunit 1 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        100225513 SNAPC3; snRNA-activating protein complex subunit 3 isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        100222127 SNAPC4; snRNA-activating protein complex subunit 4 isoform X1	K09453 SNAPC4; snRNA-activating protein complex subunit 4 
E        101234253 SNAPC5; snRNA-activating protein complex subunit 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        100218624 POU2F3; POU domain, class 2, transcription factor 3	K09364 POU2F; POU domain transcription factor, class 2 
E        100219507 POU2F1; POU domain, class 2, transcription factor 1 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        100228280 POU domain, class 5, transcription factor 3-like	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        100220911 ZNF143; zinc finger protein 143 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        100218277 ZNF76; zinc finger protein 76 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        115492378 MAF1; repressor of RNA polymerase III transcription MAF1 homolog isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        100222417 POLR1A; DNA-directed RNA polymerase I subunit RPA1 isoform X2	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        100225755 POLR1B; DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        100220630 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        100189957 putative RNA polymerase I 16 kDa polypeptide	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        100223184 POLR1E; DNA-directed RNA polymerase I subunit RPA49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        100217809 TWISTNB; DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        115492264 ZNRD1; DNA-directed RNA polymerase I subunit RPA12 isoform X1	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        100222301 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100190705 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100190183 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100227696 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        100228722 TBPL2; TATA box-binding protein-like protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100227951 TBP; TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100232377 TBPL1; TATA box-binding protein-like protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100218136 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        100227883 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        100220398 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
E        100224468 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
E        100231354 UBTF; nucleolar transcription factor 1 isoform X1	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        100219715 RRN3; RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        100190130 SUPT4H1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        115493155 SUPT5H; LOW QUALITY PROTEIN: transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
E        116807661 LOW QUALITY PROTEIN: transcription elongation factor SPT5-like	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        100223859 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        115491371 BAZ2A; LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2A	K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A 
D      CTDK-I complex
D      Transcription termination factors
E        101234254 TTF1; transcription termination factor 1	K15225 TTF1; transcription termination factor 1 
E        100223372 CAVIN1; caveolae-associated protein 1	K19387 CAVIN1; caveolae-associated protein 1 
D      Others
E        100219397 NOLC1; nucleolar and coiled-body phosphoprotein 1 isoform X1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        100220653 GTF2B; transcription initiation factor IIB isoform X3	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        100217845 GTF2E1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        115494966 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
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#Last updated: April 9, 2024