+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thermus sp. CCB_US3_UF1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TCCBUS3UF1_5120 Methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TCCBUS3UF1_10150 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E TCCBUS3UF1_20960 HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TCCBUS3UF1_18000 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TCCBUS3UF1_3110 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TCCBUS3UF1_5120 Methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TCCBUS3UF1_10150 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E TCCBUS3UF1_11840 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TCCBUS3UF1_15070 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TCCBUS3UF1_21230 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E TCCBUS3UF1_20960 HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TCCBUS3UF1_19060 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TCCBUS3UF1_18000 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TCCBUS3UF1_15310 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E TCCBUS3UF1_18130 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E TCCBUS3UF1_9780 Single-stranded DNA specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TCCBUS3UF1_15930 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TCCBUS3UF1_14310 DNA polymerase I, thermostable K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TCCBUS3UF1_17830 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E TCCBUS3UF1_21760 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E TCCBUS3UF1_16500 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E TCCBUS3UF1_17030 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TCCBUS3UF1_14310 DNA polymerase I, thermostable K02335 polA; DNA polymerase I [EC:2.7.7.7] E TCCBUS3UF1_15930 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TCCBUS3UF1_19130 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TCCBUS3UF1_19120 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TCCBUS3UF1_4910 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TCCBUS3UF1_5150 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TCCBUS3UF1_11700 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TCCBUS3UF1_6800 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E TCCBUS3UF1_3510 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E TCCBUS3UF1_6810 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E TCCBUS3UF1_420 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TCCBUS3UF1_20 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TCCBUS3UF1_16180 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TCCBUS3UF1_10580 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TCCBUS3UF1_8290 PAS/PAC sensor protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TCCBUS3UF1_70 DNA polymerase III holoenzyme tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E TCCBUS3UF1_3410 DNA polymerase III delta prime subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TCCBUS3UF1_15930 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TCCBUS3UF1_17030 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TCCBUS3UF1_20550 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TCCBUS3UF1_19180 hypothetical protein K03553 recA; recombination protein RecA E TCCBUS3UF1_20240 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TCCBUS3UF1_7240 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TCCBUS3UF1_10360 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TCCBUS3UF1_22440 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TCCBUS3UF1_8940 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TCCBUS3UF1_8930 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TCCBUS3UF1_19180 hypothetical protein K03553 recA; recombination protein RecA E TCCBUS3UF1_9090 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E TCCBUS3UF1_2550 hypothetical protein K03629 recF; DNA replication and repair protein RecF E TCCBUS3UF1_8990 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TCCBUS3UF1_22140 ATP-dependent DNA helicase RecG-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TCCBUS3UF1_9780 Single-stranded DNA specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TCCBUS3UF1_10850 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E TCCBUS3UF1_5710 hypothetical protein K06187 recR; recombination protein RecR E TCCBUS3UF1_5200 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TCCBUS3UF1_20240 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TCCBUS3UF1_7240 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TCCBUS3UF1_10360 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E TCCBUS3UF1_5820 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor E TCCBUS3UF1_13380 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E TCCBUS3UF1_2350 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TCCBUS3UF1_8940 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TCCBUS3UF1_8930 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TCCBUS3UF1_6560 DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TCCBUS3UF1_4320 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TCCBUS3UF1_4070 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TCCBUS3UF1_18150 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TCCBUS3UF1_9780 Single-stranded DNA specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TCCBUS3UF1_10850 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F TCCBUS3UF1_5710 hypothetical protein K06187 recR; recombination protein RecR F TCCBUS3UF1_15930 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F TCCBUS3UF1_1220 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TCCBUS3UF1_17830 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F TCCBUS3UF1_21760 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D TCCBUS3UF1_19180 hypothetical protein K03553 recA; recombination protein RecA D TCCBUS3UF1_5200 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TCCBUS3UF1_20550 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TCCBUS3UF1_15490 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D TCCBUS3UF1_11830 DNA polymerase beta family (X family) K02347 polX; DNA polymerase (family X) C DNA helicases C Modulation of nucleotide pools D TCCBUS3UF1_3110 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TCCBUS3UF1_5500 Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TCCBUS3UF1_16600 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TCCBUS3UF1_2130 Ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TCCBUS3UF1_10330 Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TCCBUS3UF1_2120 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D TCCBUS3UF1_18040 Phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024