+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Thiomonas arsenitoxydans

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D THI_2769 rnc; Ribonuclease III (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D THI_1193 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C THI_2768 era; GTP-binding protein era K03595 era; GTPase C THI_0635 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C THI_1182 putative prokaryotic DksA/TraR C4 type K06204 dksA; RNA polymerase-binding transcription factor C THI_2583 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C THI_1614 nusA; transcription pausing; L factor K02600 nusA; transcription termination/antitermination protein NusA C THI_2821 putative NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C THI_3724 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D THI_0119 ksgA; Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D THI_2812 putative RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D THI_3464 putative rsmB (sun protein) (Fmu, rRNA SAM-dependent methyltransferase) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D THI_0979 putative SAM-dependent methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D THI_0155 putative Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) rsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D THI_3795 putative Methyltransferase gidB (Glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D THI_0395 mraW; S-adenosyl-dependent methyl transferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D THI_0554 putative Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D THI_2474 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D THI_2149 putative Ribosomal RNA large subunit methyltransferase J (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein ftsJ) K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D THI_2746 putative methyltransferase, ybeA K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D THI_2580 putative S-adenosyl-L-methionine-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D THI_0060 putative Protein involved in catabolism of external DNA, yhiR K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D THI_0735 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D THI_2201 putative radical SAM enzyme, Cfr family, yfgB K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D THI_0425 putative 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D THI_2203 putative Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D THI_2795 rluC; Ribosomal large subunit pseudouridine synthase C (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D THI_1636 rluD; Ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D THI_2525 putative ribosomal large subunit pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C THI_0666 Putative Ribosomal-protein-alanine acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C THI_1278 putative 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C THI_1644 conserved hypothetical protein; putative enzyme K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C THI_0888 Conserved hypothetical protein, ycaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C THI_2762 putative Ribosomal protein L11 methyltransferase (L11 Mtase) (prmA) K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C THI_2172 putative Site-specific DNA-methyltransferase (adenine-specific) K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C THI_1023 conserved hypothetical protein, putative Cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C THI_2769 rnc; Ribonuclease III (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3] C THI_2796 rne; Ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12] C THI_2955 cafA; Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) K08301 rng; ribonuclease G [EC:3.1.26.-] C THI_2946 putative holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C THI_2598 deaD; Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C THI_2768 era; GTP-binding protein era K03595 era; GTPase C THI_1190 putative GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C THI_2194 der; GTPase involved in ribosome synthesis and maintenance K03977 engA; GTPase C THI_0635 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-] C THI_2192 hflX; GTP-binding protein hflX K03665 hflX; GTPase B Other maturation factors C THI_1039 putative Translation factor, SUA5 type K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C THI_3193 spoT; (P)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C THI_1616 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C THI_1613 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C THI_2745 conserved hypothetical protein; putative Iojap domain K09710 ybeB; ribosome-associated protein C THI_3449 putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor C THI_2150 conserved hypothetical protein; putative RNA-binding domain K07574 yhbY; RNA-binding protein C THI_2499 conserved hypothetical protein K09889 yjgA; ribosome-associated protein C THI_0034 rpoX; sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor C THI_3420 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase C THI_2785 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 2, 2025